Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00173 ATGGCTGCTTCTACAATGGCTCTCTCCTCCCCATCTCTGGCTGGCAAAGCCGTGAAGCTCTCCCCCAACACCCCTGAAATTCAGGGCAATGGAAGAGTCAGCATGAGGAAAACTGCCAGCAAGCAAGTTTCCTCCGGCAGCCCATGGTACGGACCCGACCGTGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCACCGTCCTACCTCACCGGAGAGTTCCCCGGTGACTACGGCTGGGACACTGCTGGACTTTCAGCCGATCCCGAGACCTTCGCCAAGAACCGTGAGCTGGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCTTTGGGCTGTGTCTTCCCTGAGCTTCTGTCCCGCAATGGCGTGAAGTTTGGTGAGGCTGTGTGGTTCAAGGCTGGATCTCAGATCTTCAGCGAGGGAGGGCTCGACTACCTGGGGAACCCAAGCTTGATCCACGCACAGAGCATTTTGGCCATCTGGGCCACTCAGGTCGTGTTGATGGGCGCCGTCGAGGGCTACCGTATTGCTGGTGGCCCACTCGGGGAGATCACTGACCCAATCTACCCAGGTGGAAGCTTCGACCCATTGGGTTTGGCTGATGACCCAGAGGCCTTCGCTGAATTGAAGGTTAAGGAGCTCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTTGGATTCTTTGTTCAGGCCATTGTTACTGGAAAGGGTCCATTGGAGAATTTGGCCGACCACCTTGCTGACCCAGTCAACAACAATGCTTGGGCCTACGCCACAAACTTTGTTCCTGGAAAGTGA 798 55.89 MAASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTASKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1671452 1672249 + Lsi01G001730.1 Lsi01g00173 652831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00173 265 MobiDBLite consensus disorder prediction 23 46 - -
Lsi01g00173 265 MobiDBLite consensus disorder prediction 1 46 - -
Lsi01g00173 265 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC 1 265 - -
Lsi01g00173 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Lsi01g00173 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 265 IPR001344 GO:0009765|GO:0016020
Lsi01g00173 265 Pfam Chlorophyll A-B binding protein 65 231 IPR022796 -
Lsi01g00173 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00173 Lsi-Chr1:1671452 Lsi10g01537 Lsi-Chr10:19772142 0 dispersed
Lsi01g00172 Lsi-Chr1:1668479 Lsi01g00173 Lsi-Chr1:1671452 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00173 K08912 - cpap:110819729 530.791