Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00176 ATGTCAGATGCAATGTTTAAAGATTTTTTTTATGGTGGAATAGATGAGTACGAGTCTCTAGTGAGAGCTTTTGGGGTAACATCGGATTATTCGAATAATAATGAAATTTCGGGGACTCCCATAAATTCTTGCGGTTCTTTGTCGTCGTCGGATGCTGGAGCTGAGGAGGATGATTCTGTGAAAGAGAAGGATAAGCAGATCGACAAAGATCATGTTGAAGATGGAGGAGAGAGTTCCAAGGCTGGATCAGGTAAATCAAAGAAGAAAGGAGAGAAGAAAGAGAGAGAAGCGAGGGTTGCTTTCATGACGAAGAGCGAGGTTGATCATCTTGAAGATGGATATAGATGGAGAAAATATGGACAGAAGGCTGTCAAGAACAGTGCTTATCCTAGGAGCTATTATAGATGCACGACTCAGAAATGTGGAGTGAAAAAACGAGTAGAGAGATCCTTTGAAGATCCATCTATTGTAATTACGACCTATGAAGGTCAACACAACCACCCAATTCCAGCGACGCTAAGGGGAAACTTATCGGCGGTGAGCGGTGCATTTTCGTCGTCCATGCTAGCACCAATGCCAGTGGTCGGTGGAGTTGGGTTTCTACCTGCAGAACTATTGAGCAACGCTTCTAACAACAACAACCAAACTATCAGTGGCGGCACCTCTGTTTATTCACAAAGCAACTTTGACTATACTTATAATGGGCGACAATCAGACTATGGACTTCTGCAGGATATTTTTCCGGCTCCGTCGTCGTTCTTCAATCGGCAACCGTGA 777 43.76 MSDAMFKDFFYGGIDEYESLVRAFGVTSDYSNNNEISGTPINSCGSLSSSDAGAEEDDSVKEKDKQIDKDHVEDGGESSKAGSGKSKKKGEKKEREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSAYPRSYYRCTTQKCGVKKRVERSFEDPSIVITTYEGQHNHPIPATLRGNLSAVSGAFSSSMLAPMPVVGGVGFLPAELLSNASNNNNQTISGGTSVYSQSNFDYTYNGRQSDYGLLQDIFPAPSSFFNRQP 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1703437 1706170 - Lsi01G001760.1 Lsi01g00176 652834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00176 258 MobiDBLite consensus disorder prediction 38 53 - -
Lsi01g00176 258 SUPERFAMILY WRKY DNA-binding domain 102 170 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi01g00176 258 MobiDBLite consensus disorder prediction 38 97 - -
Lsi01g00176 258 MobiDBLite consensus disorder prediction 54 97 - -
Lsi01g00176 258 Pfam WRKY DNA -binding domain 111 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi01g00176 258 SMART WRKY_cls 110 169 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi01g00176 258 Gene3D WRKY domain 92 171 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi01g00176 258 ProSiteProfiles WRKY domain profile. 105 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi01g00176 258 PANTHER WRKY TRANSCRIPTION FACTOR 28-RELATED 29 249 - -
Lsi01g00176 258 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 29 249 IPR044810 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00176 Lsi-Chr1:1703437 Lsi11g01628 Lsi-Chr11:24630520 8.17E-62 dispersed
Lsi01g00176 Lsi-Chr1:1703437 Lsi10g01539 Lsi-Chr10:19786197 9.00E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24553 PF03106 WRKY 8.00E-26 CL0274 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00176 - - cmo:103484390 388.652