Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi01g00177 | ATGGATGATCCTGAACTGGAAGCAATCAGGCAGAGAAGAATGCAGGAACTCATGGCCCAGCGTGGCATGGGAAGCCAAAATAATCCTGAACAACAGAAGGCCCAGGAAGAAGCTAGGAGTGAAGCAGAGGAACGCAGACAAATGATGCTCAGTCAGATTCTGTCAATGCAAGCGAGAGAAAGACTTGCTCGAATTGCACTGGTTAAACCTGAGAAGGCAAGAGGTGTTGAAGATGTTATACTGAGAGCTGCACAGATGGGCCAAATTGTAGAAAAGGTCTCTGAAGAGAGGCTTATAACATTGCTAGAACAGATCAACAACCAGACTACAAAACAGACGAAAGTCACTGTTGGGTTGGGCGATCCGTTGTCGATCAATCCTCAGGCTCTTGCAAATGGCGCAAGTATTGGACTCAAGGCTGCTGGTTGCATCTTGTCCTCAGAGGTCAACCATCGCCATATCTCAATGGACAAAGAGCCTCTTCTTCCATATCTAAGCCCAAGAGGGAAACCGCCTCCTCTACCTCCTCAATTATGCCCACTCCCTGAAAATGATGAAATTACTCTGCCTATGACGCCCACGGAGTTCAAAGACCGCTTGATCTTTGGTCCTTCATCGTCCCCACAAGACGCTTCTCCTATATTCGACGCTTTGACGCTATCTCTTTCCTCTTCGAGACCCTCTGCTTCATCTTCTCTTCAGGACCCATCTACGCCTTTAGACCCAAAATCACAATCGCAGTCTCAACAGGCGTGGCTTGTGGATTCCAATTACACATGGCCCAAAAGCAACCTCCATCGCTCCAAAACCGCACCTGCCATGGCGGTTATCAACGATGTCAACCATTCGCAGGAGCCCAAGCCACAATTTGGTAAACAATCCATTATCCGCCAAGCTGTTGTTCTTCTAATTATTTATTTATCATTGGGCGTGCTTATCTATTGGATTAATCGCGATAAGTTTTCGGCTCACGAGACTCATCCTGTGGTCGATGCATTGTACTTTTGCATTGTAACGATGTGTACTATTGGGTATGGCGATATTACCCCTAATAGTGCGGCGACGAAGCTGTTCTCAGTATTGTTTGTGTTGGTGGGATTTGGGTTTATTGATATATTGCTCTCTGGAATGGTCAGTTATGTGCTTGATTTGCAGGAGAGTTATTTGTTAAGGAATGTAAAGAGGGGGGTGCAGCGTCAATCTGGGAAATCCTATATAATTGATGTGAAGAAGGGAAGAATGAGGATTAGAATGAAGGTGGCATTGGCCTTGGGTGTTGTGATACTTTGTATAGGAGTTGGCATGGGTGTCATGCATTTTGTTGAGAACCTGGGGTGGTTGGATTCATTTTATCTTTCAGTTATGTCTGTCACAACAGTTGGATATGGTGATCAGGCATTCAAGTCAATGACTGGTCGTATTTTTGCTTCAATCTGGTTGCTTGTATCAACCCTTGCTGTTGCTCGGGCGTTTCTTTATTTAGCAGAGGCAAGAGTAGATAAGCGGCATAGGATGATGGCAAAATGGATACTCGGTCAGGATATGACTGTTTCTGAGTTTCTTGCTGCTGATACTGACAACAATGGCTTTGTGAGTTCAATCTCTAGTTTGGTTTCTAGTACCAGTTTGAGCTCCTTTGTCCAGAATGTCTATGCTAGGCTTTCCTCCCAATTGTCCTGTCCTGTTCTATTCCCCATATTCTTCTACCCACTTAAATATCCTAGCCTAGCAGGTTTGGCTGGTATATCAATCGGCATTAGGTCAGAATATGTGATATACAAGCTGAAGGAGATGGGTAAGGTATCAGAGAAAGATGTCATGCAGATATCTAATAACTTTGATAGGCTAGACACTGGCAAATGTGGGAAGATTACACTGGCTGATCTCTTGGAAAGTCATCACTGA | 1905 | 44.72 | MDDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTVGLGDPLSINPQALANGASIGLKAAGCILSSEVNHRHISMDKEPLLPYLSPRGKPPPLPPQLCPLPENDEITLPMTPTEFKDRLIFGPSSSPQDASPIFDALTLSLSSSRPSASSSLQDPSTPLDPKSQSQSQQAWLVDSNYTWPKSNLHRSKTAPAMAVINDVNHSQEPKPQFGKQSIIRQAVVLLIIYLSLGVLIYWINRDKFSAHETHPVVDALYFCIVTMCTIGYGDITPNSAATKLFSVLFVLVGFGFIDILLSGMVSYVLDLQESYLLRNVKRGVQRQSGKSYIIDVKKGRMRIRMKVALALGVVILCIGVGMGVMHFVENLGWLDSFYLSVMSVTTVGYGDQAFKSMTGRIFASIWLLVSTLAVARAFLYLAEARVDKRHRMMAKWILGQDMTVSEFLAADTDNNGFVSSISSLVSSTSLSSFVQNVYARLSSQLSCPVLFPIFFYPLKYPSLAGLAGISIGIRSEYVIYKLKEMGKVSEKDVMQISNNFDRLDTGKCGKITLADLLESHH | 634 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1719206 | 1732278 | - | Lsi01G001770.1 | Lsi01g00177 | 652835 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi01g00177 | 634 | SUPERFAMILY | Voltage-gated potassium channels | 295 | 381 | - | - | |
Lsi01g00177 | 634 | PRINTS | Two pore domain K+ channel signature | 338 | 366 | IPR003280 | GO:0005267|GO:0016020|GO:0071805 | |
Lsi01g00177 | 634 | PRINTS | Two pore domain K+ channel signature | 458 | 467 | IPR003280 | GO:0005267|GO:0016020|GO:0071805 | |
Lsi01g00177 | 634 | MobiDBLite | consensus disorder prediction | 13 | 45 | - | - | |
Lsi01g00177 | 634 | Pfam | Ion channel | 302 | 381 | IPR013099 | - | |
Lsi01g00177 | 634 | Pfam | Ion channel | 426 | 495 | IPR013099 | - | |
Lsi01g00177 | 634 | Gene3D | - | 2 | 110 | IPR036883 | GO:0003677 | |
Lsi01g00177 | 634 | SUPERFAMILY | Voltage-gated potassium channels | 410 | 514 | - | - | |
Lsi01g00177 | 634 | Pfam | Double-stranded DNA-binding domain | 9 | 117 | IPR002836 | GO:0003677 | |
Lsi01g00177 | 634 | PANTHER | POTASSIUM CHANNEL, SUBFAMILY K | 245 | 533 | IPR003280 | GO:0005267|GO:0016020|GO:0071805 | |
Lsi01g00177 | 634 | PANTHER | POTASSIUM CHANNEL, SUBFAMILY K | 587 | 629 | IPR003280 | GO:0005267|GO:0016020|GO:0071805 | |
Lsi01g00177 | 634 | Gene3D | - | 390 | 518 | - | - | |
Lsi01g00177 | 634 | SUPERFAMILY | Double-stranded DNA-binding domain | 9 | 116 | IPR036883 | GO:0003677 | |
Lsi01g00177 | 634 | MobiDBLite | consensus disorder prediction | 226 | 248 | - | - | |
Lsi01g00177 | 634 | PANTHER | TWO-PORE POTASSIUM CHANNEL 3 | 245 | 533 | - | - | |
Lsi01g00177 | 634 | PANTHER | TWO-PORE POTASSIUM CHANNEL 3 | 587 | 629 | - | - | |
Lsi01g00177 | 634 | Gene3D | - | 292 | 389 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00177 | Lsi-Chr1:1719206 | Lsi02g01840 | Lsi-Chr2:24163922 | 3.08E-51 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi01g00177 | K05389 | - | csv:101220017 | 731.095 |