Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00177 ATGGATGATCCTGAACTGGAAGCAATCAGGCAGAGAAGAATGCAGGAACTCATGGCCCAGCGTGGCATGGGAAGCCAAAATAATCCTGAACAACAGAAGGCCCAGGAAGAAGCTAGGAGTGAAGCAGAGGAACGCAGACAAATGATGCTCAGTCAGATTCTGTCAATGCAAGCGAGAGAAAGACTTGCTCGAATTGCACTGGTTAAACCTGAGAAGGCAAGAGGTGTTGAAGATGTTATACTGAGAGCTGCACAGATGGGCCAAATTGTAGAAAAGGTCTCTGAAGAGAGGCTTATAACATTGCTAGAACAGATCAACAACCAGACTACAAAACAGACGAAAGTCACTGTTGGGTTGGGCGATCCGTTGTCGATCAATCCTCAGGCTCTTGCAAATGGCGCAAGTATTGGACTCAAGGCTGCTGGTTGCATCTTGTCCTCAGAGGTCAACCATCGCCATATCTCAATGGACAAAGAGCCTCTTCTTCCATATCTAAGCCCAAGAGGGAAACCGCCTCCTCTACCTCCTCAATTATGCCCACTCCCTGAAAATGATGAAATTACTCTGCCTATGACGCCCACGGAGTTCAAAGACCGCTTGATCTTTGGTCCTTCATCGTCCCCACAAGACGCTTCTCCTATATTCGACGCTTTGACGCTATCTCTTTCCTCTTCGAGACCCTCTGCTTCATCTTCTCTTCAGGACCCATCTACGCCTTTAGACCCAAAATCACAATCGCAGTCTCAACAGGCGTGGCTTGTGGATTCCAATTACACATGGCCCAAAAGCAACCTCCATCGCTCCAAAACCGCACCTGCCATGGCGGTTATCAACGATGTCAACCATTCGCAGGAGCCCAAGCCACAATTTGGTAAACAATCCATTATCCGCCAAGCTGTTGTTCTTCTAATTATTTATTTATCATTGGGCGTGCTTATCTATTGGATTAATCGCGATAAGTTTTCGGCTCACGAGACTCATCCTGTGGTCGATGCATTGTACTTTTGCATTGTAACGATGTGTACTATTGGGTATGGCGATATTACCCCTAATAGTGCGGCGACGAAGCTGTTCTCAGTATTGTTTGTGTTGGTGGGATTTGGGTTTATTGATATATTGCTCTCTGGAATGGTCAGTTATGTGCTTGATTTGCAGGAGAGTTATTTGTTAAGGAATGTAAAGAGGGGGGTGCAGCGTCAATCTGGGAAATCCTATATAATTGATGTGAAGAAGGGAAGAATGAGGATTAGAATGAAGGTGGCATTGGCCTTGGGTGTTGTGATACTTTGTATAGGAGTTGGCATGGGTGTCATGCATTTTGTTGAGAACCTGGGGTGGTTGGATTCATTTTATCTTTCAGTTATGTCTGTCACAACAGTTGGATATGGTGATCAGGCATTCAAGTCAATGACTGGTCGTATTTTTGCTTCAATCTGGTTGCTTGTATCAACCCTTGCTGTTGCTCGGGCGTTTCTTTATTTAGCAGAGGCAAGAGTAGATAAGCGGCATAGGATGATGGCAAAATGGATACTCGGTCAGGATATGACTGTTTCTGAGTTTCTTGCTGCTGATACTGACAACAATGGCTTTGTGAGTTCAATCTCTAGTTTGGTTTCTAGTACCAGTTTGAGCTCCTTTGTCCAGAATGTCTATGCTAGGCTTTCCTCCCAATTGTCCTGTCCTGTTCTATTCCCCATATTCTTCTACCCACTTAAATATCCTAGCCTAGCAGGTTTGGCTGGTATATCAATCGGCATTAGGTCAGAATATGTGATATACAAGCTGAAGGAGATGGGTAAGGTATCAGAGAAAGATGTCATGCAGATATCTAATAACTTTGATAGGCTAGACACTGGCAAATGTGGGAAGATTACACTGGCTGATCTCTTGGAAAGTCATCACTGA 1905 44.72 MDDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTVGLGDPLSINPQALANGASIGLKAAGCILSSEVNHRHISMDKEPLLPYLSPRGKPPPLPPQLCPLPENDEITLPMTPTEFKDRLIFGPSSSPQDASPIFDALTLSLSSSRPSASSSLQDPSTPLDPKSQSQSQQAWLVDSNYTWPKSNLHRSKTAPAMAVINDVNHSQEPKPQFGKQSIIRQAVVLLIIYLSLGVLIYWINRDKFSAHETHPVVDALYFCIVTMCTIGYGDITPNSAATKLFSVLFVLVGFGFIDILLSGMVSYVLDLQESYLLRNVKRGVQRQSGKSYIIDVKKGRMRIRMKVALALGVVILCIGVGMGVMHFVENLGWLDSFYLSVMSVTTVGYGDQAFKSMTGRIFASIWLLVSTLAVARAFLYLAEARVDKRHRMMAKWILGQDMTVSEFLAADTDNNGFVSSISSLVSSTSLSSFVQNVYARLSSQLSCPVLFPIFFYPLKYPSLAGLAGISIGIRSEYVIYKLKEMGKVSEKDVMQISNNFDRLDTGKCGKITLADLLESHH 634
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 1719206 1732278 - Lsi01G001770.1 Lsi01g00177 652835
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00177 634 SUPERFAMILY Voltage-gated potassium channels 295 381 - -
Lsi01g00177 634 PRINTS Two pore domain K+ channel signature 338 366 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lsi01g00177 634 PRINTS Two pore domain K+ channel signature 458 467 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lsi01g00177 634 MobiDBLite consensus disorder prediction 13 45 - -
Lsi01g00177 634 Pfam Ion channel 302 381 IPR013099 -
Lsi01g00177 634 Pfam Ion channel 426 495 IPR013099 -
Lsi01g00177 634 Gene3D - 2 110 IPR036883 GO:0003677
Lsi01g00177 634 SUPERFAMILY Voltage-gated potassium channels 410 514 - -
Lsi01g00177 634 Pfam Double-stranded DNA-binding domain 9 117 IPR002836 GO:0003677
Lsi01g00177 634 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 245 533 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lsi01g00177 634 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 587 629 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lsi01g00177 634 Gene3D - 390 518 - -
Lsi01g00177 634 SUPERFAMILY Double-stranded DNA-binding domain 9 116 IPR036883 GO:0003677
Lsi01g00177 634 MobiDBLite consensus disorder prediction 226 248 - -
Lsi01g00177 634 PANTHER TWO-PORE POTASSIUM CHANNEL 3 245 533 - -
Lsi01g00177 634 PANTHER TWO-PORE POTASSIUM CHANNEL 3 587 629 - -
Lsi01g00177 634 Gene3D - 292 389 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00177 Lsi-Chr1:1719206 Lsi02g01840 Lsi-Chr2:24163922 3.08E-51 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00177 K05389 - csv:101220017 731.095