Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00203 ATGAACAACAAAAACAAAAAACAGTTGAAAAATTCCCAAATGGAGAAATCAAGTTTCTTTCTCCTTGCGCTGCTCCTCCTCTTCTTCTCTTTGATTCAACAAGCCTCTTCTTCCCACAATCATAAACAGGCTTACATTGTTTACTTTGGAGAGCACCATGGAGATAAGAGCTGGGAAGAGATAGAAGCAATTCAGCATTCATATTTAATGTCTGTAAAAGAGAGTGAAGAAGATGCAAAATCCTCTCTTCTTTACAATTACAAACACTCCATCAATGCTTTTGCTGCAATTCTTACACCTCAACAAGCCTCCAAACTTTCAGGGGAGGCAGAATTGGATGAAGTGGTGTCAGTGATAAAGAGTAAAAAGTACATGATGCACACAACAAGGTCATGGGAGTTTTCAGGGGTTGAAGAAGACAAGCCCACCATTAATGACTTGGTTTCTAGAGCTAACTATGGAAAGGATGTTGTCATTGGAATGCTTGACAGTGTGCATGTGAAGAGAGATGCTGAGCCGGACATAACAGCTCCGGGAGTGGACATATTAGCAGCATGGTCCGAAGAAGATTCCCCAACAAAACTTCCAAAATACTTGGACCCTCGTATTGTCAAATACAATCTCTACTCCGGCACCTCCATGTCCTGTCCCCACGTCTCTGCCGCCGCCGCCCTCCTCCGTGCCATCCACCCTACGTGGTCCCAAGCCGCCATCCGCTCCGCCCTCATGACCACCGCCACAACCACCAACAAATCCGGCCACCCCATCACCGACGACTCCACCCCCGACAACTCCCCCGCCACCCCTTTCTCCTTCGGCTCCGGCCACTTCCGCCCCTCCAAGGCGGCGGACCCCGGCCTCGTCTACGACTCTAATTACACTGATTATCTCCACTACTTGTGCGGCCTAAAAATGAACTCCATTGACCCTTCCTTCACGTGTCCTCCAAGTGGCCTCCTACCCCACGACCTGAATTACCCTTCCATTGCCGTTCCTCAACTCAGAGGCGCCGTGAGGATCAAAAGGACCGTGACCAACGTGGGTGGAGGAGGTAAAAGTGTATACTTTTTTTACAGCGAGGCGCCGCCGGGTGTGGCGGTGAGTGCTTCTCCTAATATATTGTATTTCAACGGAGTTGGGGAGAGGAAAAGATTTACAATTACAGTGAGTGGGAAAGTGAATGATAGTACTAATAATAATAATGGGTACTCTTTTGGTTGGTTTGCTTGGAGTGATGGGATTCACCATGTTAGGAGCCCAATTGCAATTTCGTCAACTTAA 1281 47.78 MNNKNKKQLKNSQMEKSSFFLLALLLLFFSLIQQASSSHNHKQAYIVYFGEHHGDKSWEEIEAIQHSYLMSVKESEEDAKSSLLYNYKHSINAFAAILTPQQASKLSGEAELDEVVSVIKSKKYMMHTTRSWEFSGVEEDKPTINDLVSRANYGKDVVIGMLDSVHVKRDAEPDITAPGVDILAAWSEEDSPTKLPKYLDPRIVKYNLYSGTSMSCPHVSAAAALLRAIHPTWSQAAIRSALMTTATTTNKSGHPITDDSTPDNSPATPFSFGSGHFRPSKAADPGLVYDSNYTDYLHYLCGLKMNSIDPSFTCPPSGLLPHDLNYPSIAVPQLRGAVRIKRTVTNVGGGGKSVYFFYSEAPPGVAVSASPNILYFNGVGERKRFTITVSGKVNDSTNNNNGYSFGWFAWSDGIHHVRSPIAISST 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1900585 1908045 - Lsi01G002030.1 Lsi01g00203 652861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00203 426 MobiDBLite consensus disorder prediction 248 271 - -
Lsi01g00203 426 Pfam Fibronectin type-III domain 323 423 IPR041469 -
Lsi01g00203 426 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 30 127 IPR037045 -
Lsi01g00203 426 ProSitePatterns Serine proteases, subtilase family, serine active site. 211 221 IPR023828 -
Lsi01g00203 426 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.5-RELATED 172 424 - -
Lsi01g00203 426 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.5-RELATED 60 164 - -
Lsi01g00203 426 Pfam Subtilase family 148 273 IPR000209 GO:0006508|GO:0008236
Lsi01g00203 426 Gene3D Peptidase S8/S53 domain 166 299 IPR036852 GO:0004252|GO:0006508
Lsi01g00203 426 Gene3D - 300 426 - -
Lsi01g00203 426 SUPERFAMILY Subtilisin-like 174 287 IPR036852 GO:0004252|GO:0006508
Lsi01g00203 426 Pfam Peptidase inhibitor I9 45 124 IPR010259 -
Lsi01g00203 426 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 60 164 IPR045051 -
Lsi01g00203 426 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 172 424 IPR045051 -
Lsi01g00203 426 ProSiteProfiles Serine proteases, subtilase domain profile. 1 283 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00203 Lsi-Chr1:1900585 Lsi07g01432 Lsi-Chr7:20854633 3.48E-69 dispersed
Lsi01g00203 Lsi-Chr1:1900585 Lsi10g00488 Lsi-Chr10:7018143 1.65E-59 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00203 - - csv:101217410 461.84