Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00205 ATGTCAGACTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAATCGTCAAGTCACTTTCTGTAAGAGAAGAAATGGTTTGCTCAAAAAAGCTTATGAACTTTCTGTTCTATGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAAGCCGTGGCCGCCTCTATGAGTATGCTAACAACAGCATGTTTCAGACAGCCAATCACCAGCTCGACGAAATTAAGGTATCAGTGCATCGTGTGAAGGCAACAATTGATAGATACAAGAAGGCATCCTCAGATTCCTCTAACACTGGATCTACTTCTGAAGCTAACACTCAGGAAATTGATTTGCACAACAACAATCAGCTGCTTCGAGCAAAGATAGCCGAGAGTGAACGAAATGTGAACATGATGGGAGGAGAATTTGAGCTGATGCAATCTCATCCGTACGATCCAAGAGACTTCTTCCAAGTGAACGGCTTACAACATAATCATCAGTATCCACGCCAAGACAACATGGCTCTTCAATTAGTTTAA 540 41.85 MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSMFQTANHQLDEIKVSVHRVKATIDRYKKASSDSSNTGSTSEANTQEIDLHNNNQLLRAKIAESERNVNMMGGEFELMQSHPYDPRDFFQVNGLQHNHQYPRQDNMALQLV 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1920957 1927222 - Lsi01G002050.1 Lsi01g00205 652863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00205 179 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Lsi01g00205 179 SUPERFAMILY SRF-like 10 83 IPR036879 GO:0003677|GO:0046983
Lsi01g00205 179 ProSitePatterns MADS-box domain signature. 11 65 IPR002100 GO:0003677|GO:0046983
Lsi01g00205 179 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Lsi01g00205 179 CDD MADS_MEF2_like 10 104 IPR033896 GO:0000977|GO:0045944
Lsi01g00205 179 PANTHER FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE 9 114 - -
Lsi01g00205 179 PANTHER FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE 113 168 - -
Lsi01g00205 179 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Lsi01g00205 179 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Lsi01g00205 179 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Lsi01g00205 179 PANTHER SERUM RESPONSE FACTOR HOMOLOG 9 114 - -
Lsi01g00205 179 PANTHER SERUM RESPONSE FACTOR HOMOLOG 113 168 - -
Lsi01g00205 179 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Lsi01g00205 179 Gene3D - 21 110 IPR036879 GO:0003677|GO:0046983
Lsi01g00205 179 MobiDBLite consensus disorder prediction 97 118 - -
Lsi01g00205 179 MobiDBLite consensus disorder prediction 94 118 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00205 Lsi02g00845 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00205 Lsi-Chr1:1920957 Lsi08g00034 Lsi-Chr8:849912 7.44E-47 dispersed
Lsi09g01727 Lsi-Chr9:25878192 Lsi01g00205 Lsi-Chr1:1920957 2.17E-25 dispersed
Lsi01g00205 Lsi-Chr1:1920957 Lsi10g01545 Lsi-Chr10:19862865 1.61E-47 wgd
Lsi01g00205 Lsi-Chr1:1920957 Lsi02g00845 Lsi-Chr2:7911295 3.44E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24554 PF00319 SRF-TF 8.30E-27 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00205 K09264 - csv:101221430 170.244