Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00206 ATGAAGAGTCCAGTGAGGTTTAAGTTGGGGAAACAGTCGTCCCTGGCGCCGGATGGGCATCTCGAAGATTTGGAGGAGCTGGTCAAGCAGCACCAAACTGAGGAGGGGATAGATTCGAGGGTGAGGTTGATGTATTTGGTCAATGAAGGTGATTTGGAAGGGATTAATGAACTGTTGGATTCGGGAGTCGATGTCAATTTCCATGATATCGACAACCGGACGGCTCTGCATATTGCTGCTTGCCAGGGATTCGCCGACGTTGTCGTTTTGTTGCTCGAACGTGGCGCTGAAGTTGACTCCAAAGATCGCTGGGGGAGCACGCCTCTTAGGGATGCTGTACATTACAAAAACCACGATGTGATCAAACTTCTGGAGAAGCATGGTGCAACGCCTCCGGTGGCCCCCATGCTCGTCAAGAATGCCCGTGAAGTTCCAGATTATGAAATTGATCCCAAGGAACTTGATTTTACTAACAGCGTGAACGTTACCAAGGGAACATTCCGCAAAGCCTCTTGGCGTGGAACTGAGGTTGCTGTGAAAGAGCTTGGAGAAGATCTATTCACTGATGAGGATAAAGTGAGGGCTTTCAGAGATGAGCTTGCATTGCTTCAGAAAATACGACACCCCAATGTTGTCCAGTTTCTTGGTGCTGTTACTCAAAGTTGGCCGATGATGATCATTACAGAATATTTACCAAAGGGAGATCTAGGAGCATTATTGAGTAGAAAAAGAGAAATAAAAACAATGACTGTTGTGAGACTTGCTCTTGATATTGCAAGGGGGATGAATTATTTGCATGAGAACAAGCCAGCACCAATTATTCATCGTGATCTTGAGCCTTCAAATATTCTGAGGGATGATTCTGGCCACCTGAAAGTAGCAAACTTTGGAGTAAGCAAGTTATTGACAGATAAACCTTCGACTTGTTCACAGAATTCACGAAGATACGAAGCTCCAGAGGTTTTCAAAAATGAAGAATATGACACAAAGGTGGACGTGTTTTCTTTTGCTCTGATTTTACAAGAGATGATTGAGGGCTGTCCATTTCCTGACAAGGCGGATATTGAAGTTCCAAAATTGTATGCAGCAGGAGAACGTCCCCCATTTAGAGCACCACTTAAACATTATGCAAATGGACTAAAAGAGCTAATTGAAGAATGTTGGAATGAGAAGCCAAATAGTAGACCAACTTTTAGGCAGATAATAACCCAGCTGGAATTCATTTACAACAGATTCGGTCATAAGAGGCGCTGGAAGGTAGCTCCATGGCCTCTGCTTTTTGTTGTCAGGCCATTGAAATGCTTCCAGAATATTGAGGCAATGTTGAAGAGAGACCGTTCCCGTCGAAGCAGTTTCAATCTATCATCACATTCTTCTGCCAGCAGTATATGA 1392 44.25 MKSPVRFKLGKQSSLAPDGHLEDLEELVKQHQTEEGIDSRVRLMYLVNEGDLEGINELLDSGVDVNFHDIDNRTALHIAACQGFADVVVLLLERGAEVDSKDRWGSTPLRDAVHYKNHDVIKLLEKHGATPPVAPMLVKNAREVPDYEIDPKELDFTNSVNVTKGTFRKASWRGTEVAVKELGEDLFTDEDKVRAFRDELALLQKIRHPNVVQFLGAVTQSWPMMIITEYLPKGDLGALLSRKREIKTMTVVRLALDIARGMNYLHENKPAPIIHRDLEPSNILRDDSGHLKVANFGVSKLLTDKPSTCSQNSRRYEAPEVFKNEEYDTKVDVFSFALILQEMIEGCPFPDKADIEVPKLYAAGERPPFRAPLKHYANGLKELIEECWNEKPNSRPTFRQIITQLEFIYNRFGHKRRWKVAPWPLLFVVRPLKCFQNIEAMLKRDRSRRSSFNLSSHSSASSI 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1936082 1941712 - Lsi01G002060.1 Lsi01g00206 652864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00206 463 Gene3D Phosphorylase Kinase; domain 1 148 231 - -
Lsi01g00206 463 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 8 423 - -
Lsi01g00206 463 SUPERFAMILY Protein kinase-like (PK-like) 162 415 IPR011009 -
Lsi01g00206 463 Pfam Protein tyrosine and serine/threonine kinase 161 405 IPR001245 GO:0004672|GO:0006468
Lsi01g00206 463 Pfam Ankyrin repeats (3 copies) 43 129 IPR002110 GO:0005515
Lsi01g00206 463 PIRSF ILK 2 428 - -
Lsi01g00206 463 SUPERFAMILY Ankyrin repeat 19 131 IPR036770 -
Lsi01g00206 463 Gene3D Transferase(Phosphotransferase) domain 1 234 420 - -
Lsi01g00206 463 ProSiteProfiles Protein kinase domain profile. 121 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00206 463 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 8 423 - -
Lsi01g00206 463 CDD STKc_MAP3K-like 165 405 - -
Lsi01g00206 463 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515
Lsi01g00206 463 SMART ANK_2a 38 67 IPR002110 GO:0005515
Lsi01g00206 463 SMART ANK_2a 71 100 IPR002110 GO:0005515
Lsi01g00206 463 SMART ANK_2a 104 133 IPR002110 GO:0005515
Lsi01g00206 463 Gene3D - 13 143 IPR036770 -
Lsi01g00206 463 ProSiteProfiles Ankyrin repeat region circular profile. 71 103 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00206 Lsi02g00843 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00206 Lsi-Chr1:1936082 Lsi04g00391 Lsi-Chr4:3856559 2.14E-83 dispersed
Lsi06g00376 Lsi-Chr6:4155816 Lsi01g00206 Lsi-Chr1:1936082 1.06E-07 dispersed
Lsi09g00948 Lsi-Chr9:12206872 Lsi01g00206 Lsi-Chr1:1936082 1.29E-13 dispersed
Lsi04g02148 Lsi-Chr4:28580866 Lsi01g00206 Lsi-Chr1:1936082 7.35E-06 transposed
Lsi01g00206 Lsi-Chr1:1936082 Lsi10g01548 Lsi-Chr10:19887308 3.22E-20 wgd
Lsi01g00206 Lsi-Chr1:1936082 Lsi02g00843 Lsi-Chr2:7891431 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83231 PF07714 PK_Tyr_Ser-Thr 3.50E-52 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00206 - - csv:101215728 807.749