Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi01g00206 | ATGAAGAGTCCAGTGAGGTTTAAGTTGGGGAAACAGTCGTCCCTGGCGCCGGATGGGCATCTCGAAGATTTGGAGGAGCTGGTCAAGCAGCACCAAACTGAGGAGGGGATAGATTCGAGGGTGAGGTTGATGTATTTGGTCAATGAAGGTGATTTGGAAGGGATTAATGAACTGTTGGATTCGGGAGTCGATGTCAATTTCCATGATATCGACAACCGGACGGCTCTGCATATTGCTGCTTGCCAGGGATTCGCCGACGTTGTCGTTTTGTTGCTCGAACGTGGCGCTGAAGTTGACTCCAAAGATCGCTGGGGGAGCACGCCTCTTAGGGATGCTGTACATTACAAAAACCACGATGTGATCAAACTTCTGGAGAAGCATGGTGCAACGCCTCCGGTGGCCCCCATGCTCGTCAAGAATGCCCGTGAAGTTCCAGATTATGAAATTGATCCCAAGGAACTTGATTTTACTAACAGCGTGAACGTTACCAAGGGAACATTCCGCAAAGCCTCTTGGCGTGGAACTGAGGTTGCTGTGAAAGAGCTTGGAGAAGATCTATTCACTGATGAGGATAAAGTGAGGGCTTTCAGAGATGAGCTTGCATTGCTTCAGAAAATACGACACCCCAATGTTGTCCAGTTTCTTGGTGCTGTTACTCAAAGTTGGCCGATGATGATCATTACAGAATATTTACCAAAGGGAGATCTAGGAGCATTATTGAGTAGAAAAAGAGAAATAAAAACAATGACTGTTGTGAGACTTGCTCTTGATATTGCAAGGGGGATGAATTATTTGCATGAGAACAAGCCAGCACCAATTATTCATCGTGATCTTGAGCCTTCAAATATTCTGAGGGATGATTCTGGCCACCTGAAAGTAGCAAACTTTGGAGTAAGCAAGTTATTGACAGATAAACCTTCGACTTGTTCACAGAATTCACGAAGATACGAAGCTCCAGAGGTTTTCAAAAATGAAGAATATGACACAAAGGTGGACGTGTTTTCTTTTGCTCTGATTTTACAAGAGATGATTGAGGGCTGTCCATTTCCTGACAAGGCGGATATTGAAGTTCCAAAATTGTATGCAGCAGGAGAACGTCCCCCATTTAGAGCACCACTTAAACATTATGCAAATGGACTAAAAGAGCTAATTGAAGAATGTTGGAATGAGAAGCCAAATAGTAGACCAACTTTTAGGCAGATAATAACCCAGCTGGAATTCATTTACAACAGATTCGGTCATAAGAGGCGCTGGAAGGTAGCTCCATGGCCTCTGCTTTTTGTTGTCAGGCCATTGAAATGCTTCCAGAATATTGAGGCAATGTTGAAGAGAGACCGTTCCCGTCGAAGCAGTTTCAATCTATCATCACATTCTTCTGCCAGCAGTATATGA | 1392 | 44.25 | MKSPVRFKLGKQSSLAPDGHLEDLEELVKQHQTEEGIDSRVRLMYLVNEGDLEGINELLDSGVDVNFHDIDNRTALHIAACQGFADVVVLLLERGAEVDSKDRWGSTPLRDAVHYKNHDVIKLLEKHGATPPVAPMLVKNAREVPDYEIDPKELDFTNSVNVTKGTFRKASWRGTEVAVKELGEDLFTDEDKVRAFRDELALLQKIRHPNVVQFLGAVTQSWPMMIITEYLPKGDLGALLSRKREIKTMTVVRLALDIARGMNYLHENKPAPIIHRDLEPSNILRDDSGHLKVANFGVSKLLTDKPSTCSQNSRRYEAPEVFKNEEYDTKVDVFSFALILQEMIEGCPFPDKADIEVPKLYAAGERPPFRAPLKHYANGLKELIEECWNEKPNSRPTFRQIITQLEFIYNRFGHKRRWKVAPWPLLFVVRPLKCFQNIEAMLKRDRSRRSSFNLSSHSSASSI | 463 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1936082 | 1941712 | - | Lsi01G002060.1 | Lsi01g00206 | 652864 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi01g00206 | 463 | Gene3D | Phosphorylase Kinase; domain 1 | 148 | 231 | - | - | |
Lsi01g00206 | 463 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 8 | 423 | - | - | |
Lsi01g00206 | 463 | SUPERFAMILY | Protein kinase-like (PK-like) | 162 | 415 | IPR011009 | - | |
Lsi01g00206 | 463 | Pfam | Protein tyrosine and serine/threonine kinase | 161 | 405 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi01g00206 | 463 | Pfam | Ankyrin repeats (3 copies) | 43 | 129 | IPR002110 | GO:0005515 | |
Lsi01g00206 | 463 | PIRSF | ILK | 2 | 428 | - | - | |
Lsi01g00206 | 463 | SUPERFAMILY | Ankyrin repeat | 19 | 131 | IPR036770 | - | |
Lsi01g00206 | 463 | Gene3D | Transferase(Phosphotransferase) domain 1 | 234 | 420 | - | - | |
Lsi01g00206 | 463 | ProSiteProfiles | Protein kinase domain profile. | 121 | 408 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi01g00206 | 463 | PANTHER | SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 | 8 | 423 | - | - | |
Lsi01g00206 | 463 | CDD | STKc_MAP3K-like | 165 | 405 | - | - | |
Lsi01g00206 | 463 | ProSiteProfiles | Ankyrin repeat profile. | 71 | 103 | IPR002110 | GO:0005515 | |
Lsi01g00206 | 463 | SMART | ANK_2a | 38 | 67 | IPR002110 | GO:0005515 | |
Lsi01g00206 | 463 | SMART | ANK_2a | 71 | 100 | IPR002110 | GO:0005515 | |
Lsi01g00206 | 463 | SMART | ANK_2a | 104 | 133 | IPR002110 | GO:0005515 | |
Lsi01g00206 | 463 | Gene3D | - | 13 | 143 | IPR036770 | - | |
Lsi01g00206 | 463 | ProSiteProfiles | Ankyrin repeat region circular profile. | 71 | 103 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi01g00206 | Lsi02g00843 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00206 | Lsi-Chr1:1936082 | Lsi04g00391 | Lsi-Chr4:3856559 | 2.14E-83 | dispersed | |
Lsi06g00376 | Lsi-Chr6:4155816 | Lsi01g00206 | Lsi-Chr1:1936082 | 1.06E-07 | dispersed | |
Lsi09g00948 | Lsi-Chr9:12206872 | Lsi01g00206 | Lsi-Chr1:1936082 | 1.29E-13 | dispersed | |
Lsi04g02148 | Lsi-Chr4:28580866 | Lsi01g00206 | Lsi-Chr1:1936082 | 7.35E-06 | transposed | |
Lsi01g00206 | Lsi-Chr1:1936082 | Lsi10g01548 | Lsi-Chr10:19887308 | 3.22E-20 | wgd | |
Lsi01g00206 | Lsi-Chr1:1936082 | Lsi02g00843 | Lsi-Chr2:7891431 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83231 | PF07714 | PK_Tyr_Ser-Thr | 3.50E-52 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi01g00206 | - | - | csv:101215728 | 807.749 |