Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi01g00213 | ATGACGTTGCTCATGGAGCTTGAATTAGCAGATCCATCCCTTCTCCTTATTCTAGGAAGGATTATTGGTCTACAACATACAAGCATAAAAAGCAACTGCATCATAAATGATCCAGTAACAAGAGGTGCAAGCTTCAGGATAGTCAGTAAAAGGCGAATAGGCTCACTTTTAAACTACGTTCATGTGCAGCTATTAGAATCTAAGCAAGATTCTGGGATCCTCTATTTTGAACTTATTTCTAATGAGGCCTTCTATTCTTCACTTCCCTTAGACAAGATTNGACACCAAGACCATTTCTCAGGGACTCTCCCAAGTGACTCATATTTGCAAACCTTTGTGATTGAATTCATCATCACATTTTACCTCATGTTTGTGGTTTCTGGTGTTGCCACTGATAATAGAGCTATTGGTGAACTTGCTGGACTTGCTGTTGGTGCTACTGTTCTTCTCAACGTGATGTTTGCAGGGCCAATTACAGGAGCATCAATGAATCCAGCCAGAAGCTTGGGACCTGCTATAGTATCAAGGCAGTTCAAAGGGTTATGGATTTACATTGTAGCTCCAATTTTTGGGGCAATTTCAGGTGCTTTAGTTTACAATACCATCAGGTTCACAGACAAGCCTCTAAGAGAGATCACTAAAAGTGCTTCTTTCCTCAAAGGACAAAGTCGCAATGGTTCGTCTTGA | 687 | 40.76 | MTLLMELELADPSLLLILGRIIGLQHTSIKSNCIINDPVTRGASFRIVSKRRIGSLLNYVHVQLLESKQDSGILYFELISNEAFYSSLPLDKIXHQDHFSGTLPSDSYLQTFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMFAGPITGASMNPARSLGPAIVSRQFKGLWIYIVAPIFGAISGALVYNTIRFTDKPLREITKSASFLKGQSRNGSS | 228 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1968369 | 1970105 | - | Lsi01G002130.1 | Lsi01g00213 | 652871 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi01g00213 | 228 | PRINTS | Major intrinsic protein family signature | 182 | 202 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Lsi01g00213 | 228 | PRINTS | Major intrinsic protein family signature | 55 | 74 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Lsi01g00213 | 228 | PRINTS | Major intrinsic protein family signature | 145 | 167 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Lsi01g00213 | 228 | PRINTS | Major intrinsic protein family signature | 114 | 132 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Lsi01g00213 | 228 | Pfam | Major intrinsic protein | 57 | 199 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Lsi01g00213 | 228 | PANTHER | AQUAPORIN NIP1-1 | 95 | 222 | - | - | |
Lsi01g00213 | 228 | Gene3D | Glycerol uptake facilitator protein. | 14 | 214 | IPR023271 | - | |
Lsi01g00213 | 228 | PANTHER | AQUAPORIN NIP2-1 | 95 | 222 | IPR034294 | - | |
Lsi01g00213 | 228 | SUPERFAMILY | Aquaporin-like | 49 | 213 | IPR023271 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00213 | Lsi-Chr1:1968369 | Lsi01g00216 | Lsi-Chr1:1972671 | 9.85E-94 | dispersed | |
Lsi01g00213 | Lsi-Chr1:1968369 | Lsi01g00215 | Lsi-Chr1:1970376 | 2.42E-17 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi01g00213 | K09874 | - | csv:101219297 | 249.595 |