Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00213 ATGACGTTGCTCATGGAGCTTGAATTAGCAGATCCATCCCTTCTCCTTATTCTAGGAAGGATTATTGGTCTACAACATACAAGCATAAAAAGCAACTGCATCATAAATGATCCAGTAACAAGAGGTGCAAGCTTCAGGATAGTCAGTAAAAGGCGAATAGGCTCACTTTTAAACTACGTTCATGTGCAGCTATTAGAATCTAAGCAAGATTCTGGGATCCTCTATTTTGAACTTATTTCTAATGAGGCCTTCTATTCTTCACTTCCCTTAGACAAGATTNGACACCAAGACCATTTCTCAGGGACTCTCCCAAGTGACTCATATTTGCAAACCTTTGTGATTGAATTCATCATCACATTTTACCTCATGTTTGTGGTTTCTGGTGTTGCCACTGATAATAGAGCTATTGGTGAACTTGCTGGACTTGCTGTTGGTGCTACTGTTCTTCTCAACGTGATGTTTGCAGGGCCAATTACAGGAGCATCAATGAATCCAGCCAGAAGCTTGGGACCTGCTATAGTATCAAGGCAGTTCAAAGGGTTATGGATTTACATTGTAGCTCCAATTTTTGGGGCAATTTCAGGTGCTTTAGTTTACAATACCATCAGGTTCACAGACAAGCCTCTAAGAGAGATCACTAAAAGTGCTTCTTTCCTCAAAGGACAAAGTCGCAATGGTTCGTCTTGA 687 40.76 MTLLMELELADPSLLLILGRIIGLQHTSIKSNCIINDPVTRGASFRIVSKRRIGSLLNYVHVQLLESKQDSGILYFELISNEAFYSSLPLDKIXHQDHFSGTLPSDSYLQTFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMFAGPITGASMNPARSLGPAIVSRQFKGLWIYIVAPIFGAISGALVYNTIRFTDKPLREITKSASFLKGQSRNGSS 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1968369 1970105 - Lsi01G002130.1 Lsi01g00213 652871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00213 228 PRINTS Major intrinsic protein family signature 182 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g00213 228 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g00213 228 PRINTS Major intrinsic protein family signature 145 167 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g00213 228 PRINTS Major intrinsic protein family signature 114 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g00213 228 Pfam Major intrinsic protein 57 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g00213 228 PANTHER AQUAPORIN NIP1-1 95 222 - -
Lsi01g00213 228 Gene3D Glycerol uptake facilitator protein. 14 214 IPR023271 -
Lsi01g00213 228 PANTHER AQUAPORIN NIP2-1 95 222 IPR034294 -
Lsi01g00213 228 SUPERFAMILY Aquaporin-like 49 213 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00213 Lsi-Chr1:1968369 Lsi01g00216 Lsi-Chr1:1972671 9.85E-94 dispersed
Lsi01g00213 Lsi-Chr1:1968369 Lsi01g00215 Lsi-Chr1:1970376 2.42E-17 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00213 K09874 - csv:101219297 249.595