Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00216 ATGGCTGAGATTTCAGGATCAAGCAATGGACATCACACTGTTTCTTTGAACATCAAAGATGAATCCACAGCTGTCACCAGCAGAGAAGTAGCAGCTGACTGGCTCTCTGTACCTTTCATTCAAAAGTTGATTGCAGAGATTGTGGGGACATATTTCTTGATATTTGCTGGTGGGGCATCAGTGGTTGTGAATTTGAGCAAAGACAAAGTCATCACTTTCCCTGGGATTTCAATTGTTTGGGGTTTGGTTGTAATGGTGATGGTTTATTCTGTTGGTCATATCTCTGGTGCTCATTTCAACCCTGCTGTTACCATAGCCTTTGCCACTACCAAGAGATTTCCATGGAAACAGGTGCCAGCTTATGTGATAGCTCAAGTTCTTGGATCAACATTGGCAGCTGGGACACTTAGGCTAATATTTAATGGACACCAAGACCATTTCTCAGGGACTCTCCCAAGTGACTCATATTTGCAAACCTTTGTGATTGAATTCATCATCACATTTTACCTCATGTTTGTGGTTTCTGGTGTTGCCACTGATAATAGAGCTATTGGTGAACTTGCTGGACTTGCTGTTGGTGCTACTGTTCTTCTCAACGTGATGTTTGCAGGGCCAATTACAGGAGCATCAATGAATCCAGCCAGAAGCTTGGGACCTGCTATAGTATCAAGGCAGTTCAAAGGGTTATGGATTTACATTGTAGCTCCAATTTTTGGGGCAATTTCAGGTGCTTTAGTTTACAATACCATCAGGTTCACAGACAAGCCTCTAAGAGAGATCACTAAAAGTGCTTCTTTCCTCAAAGGACAAAGTCGCAATGGTTCGTCTTGA 831 42.6 MAEISGSSNGHHTVSLNIKDESTAVTSREVAADWLSVPFIQKLIAEIVGTYFLIFAGGASVVVNLSKDKVITFPGISIVWGLVVMVMVYSVGHISGAHFNPAVTIAFATTKRFPWKQVPAYVIAQVLGSTLAAGTLRLIFNGHQDHFSGTLPSDSYLQTFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMFAGPITGASMNPARSLGPAIVSRQFKGLWIYIVAPIFGAISGALVYNTIRFTDKPLREITKSASFLKGQSRNGSS 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1972671 1974462 - Lsi01G002160.1 Lsi01g00216 652874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00216 276 Gene3D Glycerol uptake facilitator protein. 5 262 IPR023271 -
Lsi01g00216 276 SUPERFAMILY Aquaporin-like 35 261 IPR023271 -
Lsi01g00216 276 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Lsi01g00216 276 PANTHER AQUAPORIN NIP1-1-RELATED 1 269 - -
Lsi01g00216 276 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g00216 276 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g00216 276 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g00216 276 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g00216 276 PRINTS Major intrinsic protein family signature 193 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g00216 276 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g00216 276 CDD MIP 41 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g00216 276 Pfam Major intrinsic protein 34 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi01g00216 276 PANTHER AQUAPORIN NIP2-1 1 269 IPR034294 -
Lsi01g00216 276 TIGRFAM MIP: MIP family channel proteins 45 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00213 Lsi-Chr1:1968369 Lsi01g00216 Lsi-Chr1:1972671 9.85E-94 dispersed
Lsi01g00216 Lsi-Chr1:1972671 Lsi05g00309 Lsi-Chr5:3961833 1.20E-111 dispersed
Lsi03g01482 Lsi-Chr3:25812518 Lsi01g00216 Lsi-Chr1:1972671 1.23E-22 dispersed
Lsi01g00215 Lsi-Chr1:1970376 Lsi01g00216 Lsi-Chr1:1972671 4.41E-17 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00216 K09874 - csv:101219297 510.375