Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00224 ATGATGTCCAAATCGTATACCAATCTTTTAGATTTAGCTTCTGGGAATTTTCCCATTATGGGCCGTGAGAAGAAGCGACTTCCACGTGTAATGACTGTTTCGGGGGTAATATCAGAGCTTGATGATGATCAGGCAAATAGTGTGACTTCTGAGGGACCTTCGTCAGTGGTGCAAGACCGAATAATTATTGTTGCTAATCAGCTTCCTATTAAAGCTAAGCGTAGACCTGACAATAAAGGCTGGAGTTTAAGTTGGGATGAAGACTCTTTGCTGTGGCAGCTCAAGGATGGTTTACCTGAAGATATGGAGGTTTTGTATGTAGGATCTTTGCAGGTGGATGTTGATTCTTCTGAACAAGATGATGTATCACAGCTTTTGTTGGAGAGGTTTAAGTGTGTTCCTGCCTTTTTGCCTCATGACATTTTATCAAAATTTTATCATGGTTTTTGTAAGCAGCAATTGTGGCCACTCTTCCATTATATGCTTCCTTTCTCAGCGACTCATGGTGGTCGGTTTGATCGCTCTCTGTGGGAGGCCTATGTAGCAGCAAATAAAATTTTTTCTCAAAGGGTGATTGAGGTCATAAACCCAGACGATGACTTTGTATGGATTCACGATTATCATTTAATGGTGCTGCCCTCCTTCTTGAGGAGAAGGTTTACAAGACTGAGAATGGGCTTTTTTCTTCACAGTCCATTTCCTTCTTCAGAAATATATAGAACATTGCCAGTGAGGGAAGAAATTCTTAAGGCACTTTTGAATGCAGACCTCATTGGTTTTCACACTTTTGACTATGCCCGACATTTCCTGTCTTGTTGTAGTCGGATGTTGGGTTTGGGATATCAGTCAAAGAGGGGTTATATTGGGTTGGAATATTTTGGAAGGACCGTGGGGATAAAGATCATGCCTGTTGGAATTCACATGGGCCAGATGGAGTCAGTGTTAAGACTTGCTGATAAAGACTGGAGGGTACAGGAGCTCAAGCGACAGTTTGAAGGAAAAGTTGTCTTACTTGGAGTTGATGACATGGACATTTTTAAAGGGGTCAATCTGAAGCTGCTGGCAATGGAACAAATGCTGAGGCAACATCCTAAGTGGCAGGGGAGAGCCGTTTTCATACAGATTGCAAACCCAGCTAGAGGAAGAGGGAAAGATCTCGAGGAAATACAAGATGAAATACAGGAATGCTGCAAGAGAATTAATGAAACTTTTGGACAGCCAAATTACGAGCCGATTGTGTTCATTGATCGGCCTGTTTCTCTCACTGAAAGAGCTGCATATTATACAGTTGCTGAATGCGTTGTAGTCACAGCAGTGAGGGATGGTATGAACCTAACTCCTTATGAATATGTTGTCTGCAGGCAGGGAACCTCCGGATCGGATTATAGCACAGAAACAAATGGACCACAAAAAAGCATGCTAGTCATTTCAGAGTTCATGGGATGTTCCCCTTCTCTTAGTGGTGCAATACGGGTTAACCCATGGAACATTGAAGCTACTGCTGAAGCATTGAATGAGGCAATATCAATGGCTGATGCTGAAAAGCAATTACGCCATGAAAAGCATTATAAATATGTGAGTACACATGATGTGGCGTACTGGTCAAGGAGTTTTTTCCAAGATATGGAAAGAACTTGTAAGGATCACTTCAGAAGACGGTGCTGGGGAATTGGGTTGGGTTTTGGTTTCAGAGTTGTAGCCCTTGATCCTAACTTTAGAAAGTTGTCTATTGATGCCATTGTAGCTGCATATTCAAGGTCTAAAAGGAGGGCTATACTTTTGGATTATGATGGCACTGTCATGCCACAAACTTCAATTGATAAGACCCCAAGTCGTCAAGTTATTTCAATCATAGATTCACTTTGTGATGATGTTAGGAATACTGTTTTTGTGGTCAGTGGAAGAGGACGTGAAAGTTTGGGCAATTGGTTTTCCTCTTGCGATAAGCTTGGGATTGCTGCAGAGCATGGCTATTTTATGAGGTGGTCTGCTGATAACGACTGGGAAAATTGTGGTCAAGGTAGTGATTTTGGCTGGATACAGATTGCAGAGCCAGTCATGAAATTATATACAGAAGCTACCGACGGGTCTTCTATTGAAACCAAGGAAAGTGCCTTGGTGTGGCACCACCAGGACGCCGACCCTGATTTTGGTTGCAGCCAGGCCAAGGAACTGTTGGATCACCTTGAAAGTGTGCTGGCAAATGAACCAGTTGCTGTAAAAAGTGGTCAGTTTATTGTAGAAGTGAAGCCGCAGGGAGTCAGTAAAGGTTTGGTGGCAGAAAAGATATTCACGTCAATGGCAGCAGATGCAGGAAGACGGGCTGATTTTGTGCTATGCATTGGTGATGATAGATCTGATGAAGACATGTTTGAGATCATTGGTAATGCAGTATCAAGTGGCGCCCTCTCTTCCAATACATTAGTTTTTGCCTGCACAGTTGGACAGAAACCAAGCAAGGCCAAGTATTACTTGGATGACACAACTGAGGTCATAAATATGCTTGAAGCCCTTGCAGAAGTTTCAGACATTTCTTCTCCTCCAGAATCCCCTTGA 2556 42.76 MMSKSYTNLLDLASGNFPIMGREKKRLPRVMTVSGVISELDDDQANSVTSEGPSSVVQDRIIIVANQLPIKAKRRPDNKGWSLSWDEDSLLWQLKDGLPEDMEVLYVGSLQVDVDSSEQDDVSQLLLERFKCVPAFLPHDILSKFYHGFCKQQLWPLFHYMLPFSATHGGRFDRSLWEAYVAANKIFSQRVIEVINPDDDFVWIHDYHLMVLPSFLRRRFTRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNADLIGFHTFDYARHFLSCCSRMLGLGYQSKRGYIGLEYFGRTVGIKIMPVGIHMGQMESVLRLADKDWRVQELKRQFEGKVVLLGVDDMDIFKGVNLKLLAMEQMLRQHPKWQGRAVFIQIANPARGRGKDLEEIQDEIQECCKRINETFGQPNYEPIVFIDRPVSLTERAAYYTVAECVVVTAVRDGMNLTPYEYVVCRQGTSGSDYSTETNGPQKSMLVISEFMGCSPSLSGAIRVNPWNIEATAEALNEAISMADAEKQLRHEKHYKYVSTHDVAYWSRSFFQDMERTCKDHFRRRCWGIGLGFGFRVVALDPNFRKLSIDAIVAAYSRSKRRAILLDYDGTVMPQTSIDKTPSRQVISIIDSLCDDVRNTVFVVSGRGRESLGNWFSSCDKLGIAAEHGYFMRWSADNDWENCGQGSDFGWIQIAEPVMKLYTEATDGSSIETKESALVWHHQDADPDFGCSQAKELLDHLESVLANEPVAVKSGQFIVEVKPQGVSKGLVAEKIFTSMAADAGRRADFVLCIGDDRSDEDMFEIIGNAVSSGALSSNTLVFACTVGQKPSKAKYYLDDTTEVINMLEALAEVSDISSPPESP 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2036636 2043214 - Lsi01G002240.1 Lsi01g00224 652882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00224 851 Gene3D Glycogen Phosphorylase B; 50 320 - -
Lsi01g00224 851 CDD GT20_TPS 60 543 IPR001830 GO:0003824|GO:0005992
Lsi01g00224 851 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824|GO:0005992
Lsi01g00224 851 TIGRFAM T6PP: trehalose-phosphatase 587 839 IPR003337 GO:0003824|GO:0005992
Lsi01g00224 851 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 843 IPR001830 GO:0003824|GO:0005992
Lsi01g00224 851 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 592 799 IPR006379 -
Lsi01g00224 851 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 7-RELATED 1 843 - -
Lsi01g00224 851 Pfam Trehalose-phosphatase 593 828 IPR003337 GO:0003824|GO:0005992
Lsi01g00224 851 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 547 - -
Lsi01g00224 851 Gene3D - 589 691 IPR023214 -
Lsi01g00224 851 Gene3D - 719 846 IPR023214 -
Lsi01g00224 851 Gene3D Glycogen Phosphorylase B; 321 528 - -
Lsi01g00224 851 SUPERFAMILY HAD-like 590 839 IPR036412 -
Lsi01g00224 851 CDD HAD_TPP 591 833 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00224 Lsi-Chr1:2036636 Lsi07g01179 Lsi-Chr7:17303864 0 dispersed
Lsi01g00224 Lsi-Chr1:2036636 Lsi06g01540 Lsi-Chr6:25744451 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00224 K16055 - csv:101213082 1676.37