Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi01g00224 | ATGATGTCCAAATCGTATACCAATCTTTTAGATTTAGCTTCTGGGAATTTTCCCATTATGGGCCGTGAGAAGAAGCGACTTCCACGTGTAATGACTGTTTCGGGGGTAATATCAGAGCTTGATGATGATCAGGCAAATAGTGTGACTTCTGAGGGACCTTCGTCAGTGGTGCAAGACCGAATAATTATTGTTGCTAATCAGCTTCCTATTAAAGCTAAGCGTAGACCTGACAATAAAGGCTGGAGTTTAAGTTGGGATGAAGACTCTTTGCTGTGGCAGCTCAAGGATGGTTTACCTGAAGATATGGAGGTTTTGTATGTAGGATCTTTGCAGGTGGATGTTGATTCTTCTGAACAAGATGATGTATCACAGCTTTTGTTGGAGAGGTTTAAGTGTGTTCCTGCCTTTTTGCCTCATGACATTTTATCAAAATTTTATCATGGTTTTTGTAAGCAGCAATTGTGGCCACTCTTCCATTATATGCTTCCTTTCTCAGCGACTCATGGTGGTCGGTTTGATCGCTCTCTGTGGGAGGCCTATGTAGCAGCAAATAAAATTTTTTCTCAAAGGGTGATTGAGGTCATAAACCCAGACGATGACTTTGTATGGATTCACGATTATCATTTAATGGTGCTGCCCTCCTTCTTGAGGAGAAGGTTTACAAGACTGAGAATGGGCTTTTTTCTTCACAGTCCATTTCCTTCTTCAGAAATATATAGAACATTGCCAGTGAGGGAAGAAATTCTTAAGGCACTTTTGAATGCAGACCTCATTGGTTTTCACACTTTTGACTATGCCCGACATTTCCTGTCTTGTTGTAGTCGGATGTTGGGTTTGGGATATCAGTCAAAGAGGGGTTATATTGGGTTGGAATATTTTGGAAGGACCGTGGGGATAAAGATCATGCCTGTTGGAATTCACATGGGCCAGATGGAGTCAGTGTTAAGACTTGCTGATAAAGACTGGAGGGTACAGGAGCTCAAGCGACAGTTTGAAGGAAAAGTTGTCTTACTTGGAGTTGATGACATGGACATTTTTAAAGGGGTCAATCTGAAGCTGCTGGCAATGGAACAAATGCTGAGGCAACATCCTAAGTGGCAGGGGAGAGCCGTTTTCATACAGATTGCAAACCCAGCTAGAGGAAGAGGGAAAGATCTCGAGGAAATACAAGATGAAATACAGGAATGCTGCAAGAGAATTAATGAAACTTTTGGACAGCCAAATTACGAGCCGATTGTGTTCATTGATCGGCCTGTTTCTCTCACTGAAAGAGCTGCATATTATACAGTTGCTGAATGCGTTGTAGTCACAGCAGTGAGGGATGGTATGAACCTAACTCCTTATGAATATGTTGTCTGCAGGCAGGGAACCTCCGGATCGGATTATAGCACAGAAACAAATGGACCACAAAAAAGCATGCTAGTCATTTCAGAGTTCATGGGATGTTCCCCTTCTCTTAGTGGTGCAATACGGGTTAACCCATGGAACATTGAAGCTACTGCTGAAGCATTGAATGAGGCAATATCAATGGCTGATGCTGAAAAGCAATTACGCCATGAAAAGCATTATAAATATGTGAGTACACATGATGTGGCGTACTGGTCAAGGAGTTTTTTCCAAGATATGGAAAGAACTTGTAAGGATCACTTCAGAAGACGGTGCTGGGGAATTGGGTTGGGTTTTGGTTTCAGAGTTGTAGCCCTTGATCCTAACTTTAGAAAGTTGTCTATTGATGCCATTGTAGCTGCATATTCAAGGTCTAAAAGGAGGGCTATACTTTTGGATTATGATGGCACTGTCATGCCACAAACTTCAATTGATAAGACCCCAAGTCGTCAAGTTATTTCAATCATAGATTCACTTTGTGATGATGTTAGGAATACTGTTTTTGTGGTCAGTGGAAGAGGACGTGAAAGTTTGGGCAATTGGTTTTCCTCTTGCGATAAGCTTGGGATTGCTGCAGAGCATGGCTATTTTATGAGGTGGTCTGCTGATAACGACTGGGAAAATTGTGGTCAAGGTAGTGATTTTGGCTGGATACAGATTGCAGAGCCAGTCATGAAATTATATACAGAAGCTACCGACGGGTCTTCTATTGAAACCAAGGAAAGTGCCTTGGTGTGGCACCACCAGGACGCCGACCCTGATTTTGGTTGCAGCCAGGCCAAGGAACTGTTGGATCACCTTGAAAGTGTGCTGGCAAATGAACCAGTTGCTGTAAAAAGTGGTCAGTTTATTGTAGAAGTGAAGCCGCAGGGAGTCAGTAAAGGTTTGGTGGCAGAAAAGATATTCACGTCAATGGCAGCAGATGCAGGAAGACGGGCTGATTTTGTGCTATGCATTGGTGATGATAGATCTGATGAAGACATGTTTGAGATCATTGGTAATGCAGTATCAAGTGGCGCCCTCTCTTCCAATACATTAGTTTTTGCCTGCACAGTTGGACAGAAACCAAGCAAGGCCAAGTATTACTTGGATGACACAACTGAGGTCATAAATATGCTTGAAGCCCTTGCAGAAGTTTCAGACATTTCTTCTCCTCCAGAATCCCCTTGA | 2556 | 42.76 | MMSKSYTNLLDLASGNFPIMGREKKRLPRVMTVSGVISELDDDQANSVTSEGPSSVVQDRIIIVANQLPIKAKRRPDNKGWSLSWDEDSLLWQLKDGLPEDMEVLYVGSLQVDVDSSEQDDVSQLLLERFKCVPAFLPHDILSKFYHGFCKQQLWPLFHYMLPFSATHGGRFDRSLWEAYVAANKIFSQRVIEVINPDDDFVWIHDYHLMVLPSFLRRRFTRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNADLIGFHTFDYARHFLSCCSRMLGLGYQSKRGYIGLEYFGRTVGIKIMPVGIHMGQMESVLRLADKDWRVQELKRQFEGKVVLLGVDDMDIFKGVNLKLLAMEQMLRQHPKWQGRAVFIQIANPARGRGKDLEEIQDEIQECCKRINETFGQPNYEPIVFIDRPVSLTERAAYYTVAECVVVTAVRDGMNLTPYEYVVCRQGTSGSDYSTETNGPQKSMLVISEFMGCSPSLSGAIRVNPWNIEATAEALNEAISMADAEKQLRHEKHYKYVSTHDVAYWSRSFFQDMERTCKDHFRRRCWGIGLGFGFRVVALDPNFRKLSIDAIVAAYSRSKRRAILLDYDGTVMPQTSIDKTPSRQVISIIDSLCDDVRNTVFVVSGRGRESLGNWFSSCDKLGIAAEHGYFMRWSADNDWENCGQGSDFGWIQIAEPVMKLYTEATDGSSIETKESALVWHHQDADPDFGCSQAKELLDHLESVLANEPVAVKSGQFIVEVKPQGVSKGLVAEKIFTSMAADAGRRADFVLCIGDDRSDEDMFEIIGNAVSSGALSSNTLVFACTVGQKPSKAKYYLDDTTEVINMLEALAEVSDISSPPESP | 851 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 2036636 | 2043214 | - | Lsi01G002240.1 | Lsi01g00224 | 652882 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi01g00224 | 851 | Gene3D | Glycogen Phosphorylase B; | 50 | 320 | - | - | |
Lsi01g00224 | 851 | CDD | GT20_TPS | 60 | 543 | IPR001830 | GO:0003824|GO:0005992 | |
Lsi01g00224 | 851 | Pfam | Glycosyltransferase family 20 | 60 | 543 | IPR001830 | GO:0003824|GO:0005992 | |
Lsi01g00224 | 851 | TIGRFAM | T6PP: trehalose-phosphatase | 587 | 839 | IPR003337 | GO:0003824|GO:0005992 | |
Lsi01g00224 | 851 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 1 | 843 | IPR001830 | GO:0003824|GO:0005992 | |
Lsi01g00224 | 851 | TIGRFAM | HAD-SF-IIB: HAD hydrolase, family IIB | 592 | 799 | IPR006379 | - | |
Lsi01g00224 | 851 | PANTHER | ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 7-RELATED | 1 | 843 | - | - | |
Lsi01g00224 | 851 | Pfam | Trehalose-phosphatase | 593 | 828 | IPR003337 | GO:0003824|GO:0005992 | |
Lsi01g00224 | 851 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 59 | 547 | - | - | |
Lsi01g00224 | 851 | Gene3D | - | 589 | 691 | IPR023214 | - | |
Lsi01g00224 | 851 | Gene3D | - | 719 | 846 | IPR023214 | - | |
Lsi01g00224 | 851 | Gene3D | Glycogen Phosphorylase B; | 321 | 528 | - | - | |
Lsi01g00224 | 851 | SUPERFAMILY | HAD-like | 590 | 839 | IPR036412 | - | |
Lsi01g00224 | 851 | CDD | HAD_TPP | 591 | 833 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00224 | Lsi-Chr1:2036636 | Lsi07g01179 | Lsi-Chr7:17303864 | 0 | dispersed | |
Lsi01g00224 | Lsi-Chr1:2036636 | Lsi06g01540 | Lsi-Chr6:25744451 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi01g00224 | K16055 | - | csv:101213082 | 1676.37 |