Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00233 CACTTGACTGTCAGTCATTGCCCTCTCGAGCTCCATGGAGCTGCCCTGCTACTGCTAGGGCAACTTAGACAAGGAAAATTGACGAAATTCAAAATCGAGAATAGAAAAAAGAAAGGAACAAATCCAATGGCTCATCATTGCCACAGTCATCTGCAGTTCACAGCGAAGATGGAGAAATTATGGTCTTCACCACACACAGGATTTCCTCAGTCTCAATCTCAACCATTAAACTTACCCACATCTCGAGATTTCCTGTGGGTTCTTGCGTCTTACACTTTGGCAGCTCTCGCTTTCGTTTTCCCTCCCCCAGCTTGTTTGGTAATGGAAGTTGTAAAATTGGTTCTGTCGCTGTTCTTCCTCATCTGGGTGGTCTCTGCCTCAGACAGTCATTTGTCTCCGAAAGGAGTAAACTATGAAGTGGCGGCTTTGATGTCAGTGAAGAGTAGGATAAGGGACGAGCGGGGAGTGATGCAAGGATGGGACATAAATTCGGTTGATCCATGCACCTGGAATATGGTTGCTTGCTCTGCTGAGAGCTTTGTGATTTCTCTTGAGATGCCAAATATGGGCTTATCTGGAACGCTTTCCCCTAGCATCGGGAACCTGAGTCATCTTCGGACAATGTTGTTGCAAAATAATGAGTTATCTGGTCCAATCCCAGATGATATAGGAGAACTTTCAGAGCTTCAGACTCTTGACCTTTCTAACAACCAGTTTGTAGGCGGTATTCCACGTTCTTTGGGGTTTCTCACTCATTTAAATTACTTGAAGCTCAGTAGTAACAAGTTAAGTGGACCAATACCGGAATCTGTTGCAAATATCTCAGGCCTTTCCTTTTTGGATTTATCGAATAATAATCTCAGTGGTCCAACTCCAAGAATACTTGCCAAAGAGTACAGTGTTGCAGGGAATAGCTTCCTTTGTGCATCTTCATCATCTAAATTTTGCGGTGTAGTTCCAAAGCCAGTTAACGAGACTGGTTCGTCTCAGAAAGATAATGGGCGTCGTCACTTGGTTCTTTCCATAGCTCTAATTGTCAGTTTCACATTTGTGGTTTCTGTTGTGTTACTTGTTGGCTGGGTGCATTGTTATAGATCTCATCTTGTCTTCACATCCTACGTGCAGCAAGATTATGAATTTGATATAGGTCATCTGAAAAGGTTTACATTCCGTGAACTACAAAAGGCAACATGTAATTTTAGTCCCCAAAACATCCTGGGACAGGGTGGTTTTGGAGTAGTTTATAAAGGTTATCTTCCAAATGGGACATATGTTGCTGTCAAGAGACTGAAAGATCCGAATTACACTGGAGAAGTGCAGTTTCAAACTGAAGTCGAAATGATTGGCTTAGCAGTGCACCGCAACCTCTTGCGTTTGTATGGATTTTGTATGACGCCGGATGAGAGATTGCTTGTTTATCCATATATGCCAAATGGGAGTGTTGCTGACCGTCTTAGAGGTTTGTTCAACAAGTGCCGATATAGGGGTTTAGTTTATCAATTTACTATCATATATTCTCATGAGGCAACTGCAGAATTAAATGCAGGCCAAGAGAAGCCTTCATTGAATTGGAACAGAAGATTGCGTATTGCCCTTGGTGCAGCACGTGGACTTGTATACTTGCATGAGCAGTGTAACCCAAAAATTATTCACCGGGATGTGAAGGCTGCAAATATTCTTCTAGATGAAAGCTTTGAAGCCGTGGTTGGGGATTTTGGTCTGGCAAAGATGTTAGATAGGAGAGATTCACATGTTACTACTGCAGTTAGGGGCACAGTGGGACATATTGCCCCGGAATATCTTTCAACTGGACAATCTTCAGAAAAGACGGATGTTTTTGGATTTGGCATATTGGTTCTGGAACTCTTGACAGGGCAAAAAGCACTTGATGCTGGCAATGGTCAAATTCGAAAGGGAATGATCCTCGAATGGGTTAGAACATTACATGAGGAGAAGAGGTTAGATGTGCTGGTGGACAGGGATCTTAAAGGATGTTTTGATGCAATGGAGCTGGAAAAAGCTGTAGAGTTGGCTCTGCAGTGTACTCAATCACATCCTCAACTCAGACCAAAGATGTCCGAGATCTTGAAGATTCTAGAAGGTCTCGTCGGACAGTTGAGCCAAATGGAGGAATCACCAGGTGGAGCAAGTCATTATGAGGATAGAGCTCACAGTTTCTCCAGAAATTACAGTGATATTCATGAAGAATCTTCATTTGTCGTCGAAGCGATGGAGCTTTCGGGACCTCGGTGA 2253 43.19 HLTVSHCPLELHGAALLLLGQLRQGKLTKFKIENRKKKGTNPMAHHCHSHLQFTAKMEKLWSSPHTGFPQSQSQPLNLPTSRDFLWVLASYTLAALAFVFPPPACLVMEVVKLVLSLFFLIWVVSASDSHLSPKGVNYEVAALMSVKSRIRDERGVMQGWDINSVDPCTWNMVACSAESFVISLEMPNMGLSGTLSPSIGNLSHLRTMLLQNNELSGPIPDDIGELSELQTLDLSNNQFVGGIPRSLGFLTHLNYLKLSSNKLSGPIPESVANISGLSFLDLSNNNLSGPTPRILAKEYSVAGNSFLCASSSSKFCGVVPKPVNETGSSQKDNGRRHLVLSIALIVSFTFVVSVVLLVGWVHCYRSHLVFTSYVQQDYEFDIGHLKRFTFRELQKATCNFSPQNILGQGGFGVVYKGYLPNGTYVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRGLFNKCRYRGLVYQFTIIYSHEATAELNAGQEKPSLNWNRRLRIALGAARGLVYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKMLDRRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILVLELLTGQKALDAGNGQIRKGMILEWVRTLHEEKRLDVLVDRDLKGCFDAMELEKAVELALQCTQSHPQLRPKMSEILKILEGLVGQLSQMEESPGGASHYEDRAHSFSRNYSDIHEESSFVVEAMELSGPR 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2124878 2129776 - Lsi01G002330.1 Lsi01g00233 652891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00233 750 SMART serkin_6 400 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00233 750 Pfam Leucine rich repeat N-terminal domain 137 176 IPR013210 -
Lsi01g00233 750 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 114 487 - -
Lsi01g00233 750 Pfam Protein tyrosine and serine/threonine kinase 403 699 IPR001245 GO:0004672|GO:0006468
Lsi01g00233 750 Gene3D Phosphorylase Kinase; domain 1 370 475 - -
Lsi01g00233 750 SUPERFAMILY L domain-like 138 298 - -
Lsi01g00233 750 ProSitePatterns Serine/Threonine protein kinases active-site signature. 549 561 IPR008271 GO:0004672|GO:0006468
Lsi01g00233 750 Gene3D Ribonuclease Inhibitor 136 318 IPR032675 -
Lsi01g00233 750 SUPERFAMILY Protein kinase-like (PK-like) 384 711 IPR011009 -
Lsi01g00233 750 Gene3D Transferase(Phosphotransferase) domain 1 510 710 - -
Lsi01g00233 750 ProSitePatterns Protein kinases ATP-binding region signature. 406 428 IPR017441 GO:0005524
Lsi01g00233 750 Pfam Leucine Rich Repeat 229 250 IPR001611 GO:0005515
Lsi01g00233 750 ProSiteProfiles Protein kinase domain profile. 400 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00233 750 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 513 750 - -
Lsi01g00233 750 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 114 487 - -
Lsi01g00233 750 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 513 750 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00233 Lsi-Chr1:2124878 Lsi08g01665 Lsi-Chr8:24413379 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83232 PF00069 Pkinase 1.20E-40 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00233 - - mcha:111012268 1122.84