Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00235 ATGGCCGACCGGCCGGACCCTGACAAGAAGACCGAAACCACTAGGAAGGACATGCCCGCGCTTCTTTTGGGCCGATACGAGATCGGGAAGCTCCTTGGCCATGGGACCTTCGCTAAGGTCTACCATGCCCGAAACATCAAGACCAACGAAAGCGTCGCCATTAAAGTCATCGACAAGGAGAAGATCCTCAAGGGCGGTTTAATCGCCCACATCAAGCGCGAGATCTCAATCCTCCGACGTGTTCGACACCCCAATATTGTGCAACTCTTCGAGGTCATGGCCACCAAGGCCAAGATCTACTTCGTTATGGAATACGTCCGCGGTGGCGAGCTTTTCAAGAAGGTCTCCAAGGGCCGATTGAAGGAAGAGGTCGCACGAAAGTACTTTCAGCAATTAATCTCCGCCGTTGCTTTTTGCCACGCGCGCGGTGTTTATCATCGCGACCTTAAACCGGAGAATTTGCTGCTCGATGAGAATGGGAATCTTAAGGTCTCCGATTTTGGCCTCAGCGCCGTCTCCGATCAAATTCGACAAGATGGGTTGTTTCATACTTTTTGTGGTACACCGGCGTATGTGGCTCCGGAGGTTTTGGCCCGGAAAGGGTATGAGGCTGCGAAGGTCGATATTTGGTCATGTGGGGTTATTCTGTTTGTTCTGATGGCGGGTTATTTGCCCTTCCACGACCAAAACATTATGGCAATGTATAAGAAGATTTACAAGGGGGAGTTTCGGTGTCCCAGATGGTTCTCGCCGGAGCTAATTCGACTCCTAACTCGTCTTTTAGATACAAATCCCGAAACCCGTTTCACAATTCCTGAAATCATGGAGAATAGATGGTTCAAAAAGGGGTATAAGCATATCAAATTCTACATCGAAGACGATAAGGTCTGCAGCGTTGAGGATGACAACGATGATGTCGATTCCTTGTCGGATCAATCACAATCGGAATCGGATTCCGAAATTATTGAGACCAGAAGAAAGGTTACCTCACTCCCAAGACCCGCGAGTTTGAATGCATTTGATATAATTTCATTTTCGCCCGGATTTGATCTTTCTGGATTGTTTGAGGATGGAGGGGAAGAGGCAAGATTCGTGTCCAATGCCCCGGTGTCGAAAATTATATCGAAATTGGAGGAGATTGCAAAATTGGTGAGTTTTACTGTGAGGAAGAAGGATTGCAGGGTTAGTTTAGAGGGGTCACGGGAAGGAGTGAAAGGGCCATTGACAATCGCGGCCGAGGTATTTGAGTTGACGCCGAATTTGGTGATGGTGGAGGTGAAGAGGAAAGGGGGAGATAAAGCAGAGTATGAACAGTTCTGTAATAATGAATTGAAGCCAGCATTGTTGAATCTGAAGGTGGAAGACTCTGCTGCTCCATCACATATACCATCACTTACTGCATGA 1404 47.93 MADRPDPDKKTETTRKDMPALLLGRYEIGKLLGHGTFAKVYHARNIKTNESVAIKVIDKEKILKGGLIAHIKREISILRRVRHPNIVQLFEVMATKAKIYFVMEYVRGGELFKKVSKGRLKEEVARKYFQQLISAVAFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYEAAKVDIWSCGVILFVLMAGYLPFHDQNIMAMYKKIYKGEFRCPRWFSPELIRLLTRLLDTNPETRFTIPEIMENRWFKKGYKHIKFYIEDDKVCSVEDDNDDVDSLSDQSQSESDSEIIETRRKVTSLPRPASLNAFDIISFSPGFDLSGLFEDGGEEARFVSNAPVSKIISKLEEIAKLVSFTVRKKDCRVSLEGSREGVKGPLTIAAEVFELTPNLVMVEVKRKGGDKAEYEQFCNNELKPALLNLKVEDSAAPSHIPSLTA 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2149310 2150713 + Lsi01G002350.1 Lsi01g00235 652893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00235 467 CDD STKc_SnRK3 25 279 - -
Lsi01g00235 467 ProSiteProfiles Protein kinase domain profile. 26 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00235 467 ProSitePatterns Protein kinases ATP-binding region signature. 32 55 IPR017441 GO:0005524
Lsi01g00235 467 SUPERFAMILY Protein kinase-like (PK-like) 22 323 IPR011009 -
Lsi01g00235 467 MobiDBLite consensus disorder prediction 302 325 - -
Lsi01g00235 467 CDD CIPK_C 338 448 - -
Lsi01g00235 467 PANTHER - 19 461 - -
Lsi01g00235 467 Pfam NAF domain 334 390 IPR004041 GO:0007165
Lsi01g00235 467 Gene3D Kinase associated domain 1, KA1 334 451 - -
Lsi01g00235 467 SMART serkin_6 26 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00235 467 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 19 461 - -
Lsi01g00235 467 Pfam Protein kinase domain 26 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00235 467 ProSiteProfiles NAF domain profile. 332 356 IPR018451 GO:0007165
Lsi01g00235 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Lsi01g00235 467 Gene3D Transferase(Phosphotransferase) domain 1 17 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00235 Lsi-Chr1:2149310 Lsi01g01604 Lsi-Chr1:14328759 7.24E-180 dispersed
Lsi01g00235 Lsi-Chr1:2149310 Lsi02g00815 Lsi-Chr2:7601919 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83234 PF00069 Pkinase 4.60E-76 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00235 - - csv:101214053 874.389