Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi01g00243 | ATGGCTGAGGTTCATAGTAGCAACACGGATGGAATTAAGCTTTTTGGTACTATGATTCATTTACAGACACGAAAAATGAAGGAGGAACCGGAGAAAGGCGGCGGCGGCGGCGGCGAAGGTGATGAAACAGAGATGAAGAGGCCAGAAAAAATTATTCCATGCCCAAGATGTAAGAGTATGGACACCAAATTCTGTTACTTCAACAATTACAATGTTAACCAGCCTAGACATTTCTGCAAGGGTTGCCAAAGGTACTGGACGGCCGGTGGGGCGCTCCGGAACGTACCCATCGGAGCCGGCCGCCGGAGAACCAAGCCGCCGCCCAATTGTCGGACCCTTTCCGGCGAGCTGCCAGAGGATTATGGGCAGCTTTACGATGCGGCTTCTGGGATTATTCATCAGCTTGAATTAGATACGGTGGAGAGGTGGCATCTCACGGTGGCGGAACAGGATTTTACCCAAGTTTTTCCTTTCAAACGCCGGAAGATTATCGGTCAACACGGTCAAACGTCTTAA | 516 | 50.19 | MAEVHSSNTDGIKLFGTMIHLQTRKMKEEPEKGGGGGGEGDETEMKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRTKPPPNCRTLSGELPEDYGQLYDAASGIIHQLELDTVERWHLTVAEQDFTQVFPFKRRKIIGQHGQTS | 171 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 2212592 | 2213107 | + | Lsi01G002430.1 | Lsi01g00243 | 652901 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi01g00243 | 171 | MobiDBLite | consensus disorder prediction | 23 | 47 | - | - | |
Lsi01g00243 | 171 | ProSitePatterns | Zinc finger Dof-type signature. | 54 | 90 | IPR003851 | GO:0003677|GO:0006355 | |
Lsi01g00243 | 171 | ProSiteProfiles | Zinc finger Dof-type profile. | 52 | 106 | IPR003851 | GO:0003677|GO:0006355 | |
Lsi01g00243 | 171 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.5-LIKE | 7 | 164 | - | - | |
Lsi01g00243 | 171 | Pfam | Dof domain, zinc finger | 50 | 105 | IPR003851 | GO:0003677|GO:0006355 | |
Lsi01g00243 | 171 | PANTHER | CYCLIC DOF FACTOR 2 | 7 | 164 | IPR045174 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi01g00243 | Lsi02g00805 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00243 | Lsi-Chr1:2212592 | Lsi03g01577 | Lsi-Chr3:26782293 | 7.21E-38 | dispersed | |
Lsi01g00243 | Lsi-Chr1:2212592 | Lsi02g00805 | Lsi-Chr2:7436384 | 3.32E-56 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24559 | PF02701 | zf-Dof | 1.70E-31 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi01g00243 | - | - | csv:101215015 | 323.939 |