Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00243 ATGGCTGAGGTTCATAGTAGCAACACGGATGGAATTAAGCTTTTTGGTACTATGATTCATTTACAGACACGAAAAATGAAGGAGGAACCGGAGAAAGGCGGCGGCGGCGGCGGCGAAGGTGATGAAACAGAGATGAAGAGGCCAGAAAAAATTATTCCATGCCCAAGATGTAAGAGTATGGACACCAAATTCTGTTACTTCAACAATTACAATGTTAACCAGCCTAGACATTTCTGCAAGGGTTGCCAAAGGTACTGGACGGCCGGTGGGGCGCTCCGGAACGTACCCATCGGAGCCGGCCGCCGGAGAACCAAGCCGCCGCCCAATTGTCGGACCCTTTCCGGCGAGCTGCCAGAGGATTATGGGCAGCTTTACGATGCGGCTTCTGGGATTATTCATCAGCTTGAATTAGATACGGTGGAGAGGTGGCATCTCACGGTGGCGGAACAGGATTTTACCCAAGTTTTTCCTTTCAAACGCCGGAAGATTATCGGTCAACACGGTCAAACGTCTTAA 516 50.19 MAEVHSSNTDGIKLFGTMIHLQTRKMKEEPEKGGGGGGEGDETEMKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRTKPPPNCRTLSGELPEDYGQLYDAASGIIHQLELDTVERWHLTVAEQDFTQVFPFKRRKIIGQHGQTS 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2212592 2213107 + Lsi01G002430.1 Lsi01g00243 652901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00243 171 MobiDBLite consensus disorder prediction 23 47 - -
Lsi01g00243 171 ProSitePatterns Zinc finger Dof-type signature. 54 90 IPR003851 GO:0003677|GO:0006355
Lsi01g00243 171 ProSiteProfiles Zinc finger Dof-type profile. 52 106 IPR003851 GO:0003677|GO:0006355
Lsi01g00243 171 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 7 164 - -
Lsi01g00243 171 Pfam Dof domain, zinc finger 50 105 IPR003851 GO:0003677|GO:0006355
Lsi01g00243 171 PANTHER CYCLIC DOF FACTOR 2 7 164 IPR045174 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00243 Lsi02g00805 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00243 Lsi-Chr1:2212592 Lsi03g01577 Lsi-Chr3:26782293 7.21E-38 dispersed
Lsi01g00243 Lsi-Chr1:2212592 Lsi02g00805 Lsi-Chr2:7436384 3.32E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24559 PF02701 zf-Dof 1.70E-31 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00243 - - csv:101215015 323.939