Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00265 ATGGGCCATGGCCAATCCACATTGCAACAACCACTTTTATTCCCTCAGGGCTTGCCTTCATCTTTACTACTACGACTTCACAAAGCTGGACCAGTTGTCTACTGCCTCCTCTTTCAAAATTGGAGTGGCTATGCAACTGTTTCTAGCTTGCATAGGAATATAAGCACTTCGTTTGTGGAGATGGGTTCTGGACGCTGGTTTAAGGCAGTAATTCGCTTAAAGAAAGTGAAAACCAGCAGTTCGAAACAAACTAAGGAGAAATTGGATGATTTGCAAAAAGATTCCCCAAGGTTTAAAAATGGTAGTACTAATGGGAACAGGAAGTCTCTTGGGATGCCAATTGAAGATGTAGCTGCAGTTCGGATTCAGACAGCATACCGAGCATATCGTGCCAGGAAAAATTTACGTCGCTTGAAAGGGGCCTTCAGACTGCAGAATCTGACTCAAGGCAATTCCGTTAGAAAGCATGCTACATCTACATTAGGCTATCTTCATTCATGGAGCAATATACAAGCTCAAATTAAGGCTCGTCGACTTTATATGGTGACAGAAGGACGACAGAGACAAAAAAGATTAGAAAATCAACGAAAACTTGAGGCTAAGCTTCATGATATAGAGGTGGAGTGGTGTGGGGGTGCAGACTCCATGGACGGGATTCTTTCAAGGATACATGAGAGAGAAGAAGCAGCTGTTAAGCGCGAACGTGCTATGGCATATGCATTCTCACATCAGTGGAGAGCAAACTCCAATGAGATGTATGGGTTGGGTAAAGATGAACTTGGTAAAGCTGATTGGGGTTGGAGCTGGAAAGAACGATGGATAGCTGCTCGTCCGTGGGAAAGCCGTGTACCATCTCAGTTTGATAGTCCAAAGAAATCTACAATTAAACAATCAAGCAAAATCAGTAAGAGAAACTCGCCATCCCCTAAAGCAAAAGTTTTGATTAAACCTCCTTCCCCGAATGGGAAATCAACTTCAAAGGCTCGGAGGTTGTCTTATCCAGCAACCGAGAAAACCAAGAAACTGGCTACAGAAGAAAAAGGCGTAAAAAATGACGAAGGGAATAATAAGAAAGAAGAAACAGCATCCTAA 1092 42.95 MGHGQSTLQQPLLFPQGLPSSLLLRLHKAGPVVYCLLFQNWSGYATVSSLHRNISTSFVEMGSGRWFKAVIRLKKVKTSSSKQTKEKLDDLQKDSPRFKNGSTNGNRKSLGMPIEDVAAVRIQTAYRAYRARKNLRRLKGAFRLQNLTQGNSVRKHATSTLGYLHSWSNIQAQIKARRLYMVTEGRQRQKRLENQRKLEAKLHDIEVEWCGGADSMDGILSRIHEREEAAVKRERAMAYAFSHQWRANSNEMYGLGKDELGKADWGWSWKERWIAARPWESRVPSQFDSPKKSTIKQSSKISKRNSPSPKAKVLIKPPSPNGKSTSKARRLSYPATEKTKKLATEEKGVKNDEGNNKKEETAS 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2367995 2373055 - Lsi01G002650.1 Lsi01g00265 652923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00265 363 MobiDBLite consensus disorder prediction 286 306 - -
Lsi01g00265 363 Gene3D - 65 161 - -
Lsi01g00265 363 MobiDBLite consensus disorder prediction 82 109 - -
Lsi01g00265 363 ProSiteProfiles IQ motif profile. 115 143 IPR000048 GO:0005515
Lsi01g00265 363 MobiDBLite consensus disorder prediction 282 363 - -
Lsi01g00265 363 MobiDBLite consensus disorder prediction 333 363 - -
Lsi01g00265 363 PANTHER IQ-DOMAIN 5-RELATED 61 341 - -
Lsi01g00265 363 MobiDBLite consensus disorder prediction 82 96 - -
Lsi01g00265 363 PANTHER IQ-DOMAIN 9 61 341 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00265 - - - csv:101220729 517.309
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00265 Lsi-Chr1:2367995 Lsi07g00304 Lsi-Chr7:3259617 8.06E-73 dispersed
Lsi01g00265 Lsi-Chr1:2367995 Lsi04g01418 Lsi-Chr4:21947617 7.34E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g183 . . Bda02g00019 . . Bpe01g00879 . . . . . Cma07g00203 . Car07g00168 . . . Bhi03g00330 . . . . . . Cla01g02298 Cam01g2409 Cec04g2056 . Clacu01g2430 Cmu01g2294 Cre04g1962 Cone1ag0191 Cone5ag1677 . . Lsi01g00265 Csa06g03677 . Cme08g00247 . . . . . . . Bma11g01010 . . Cmo07g00202 . . . . Cpe19g01052 . . . . . . . . . . . . . . . . . Chy02g00253 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi06g00645 . 23 430 IQD Protein Family AT3G22190 58.0 7.0e-97 351.3
Lsi04g01418 . 1 438 IQD Protein Family AT2G26180 61.1 3.8e-119 425.2
Lsi01g00265 . 61 334 IQD Protein Family AT2G33990 51.8 1.7e-61 233.0
Lsi07g00304 . 40 215 IQD Protein Family AT2G33990 55.9 2.0e-49 193.0
Lsi01g00265 . 61 282 IQD Protein Family AT3G15050 50.5 1.1e-55 213.8
Lsi07g00304 . 43 216 IQD Protein Family AT3G15050 62.7 5.3e-55 211.5
Lsi09g00803 . 124 471 IQD Protein Family AT5G13460 50.4 1.2e-75 280.8
Lsi06g00223 . 1 391 IQD Protein Family AT3G16490 51.0 2.9e-65 246.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007113 1 8 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 0 2 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00265 Lsi_Chr01 FPKM 0.034688 0.20753 11.453886 7.959461 40.836708 52.000996 43.370113 5.843479 3.157832 4.40385