Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00265 ATGGGCCATGGCCAATCCACATTGCAACAACCACTTTTATTCCCTCAGGGCTTGCCTTCATCTTTACTACTACGACTTCACAAAGCTGGACCAGTTGTCTACTGCCTCCTCTTTCAAAATTGGAGTGGCTATGCAACTGTTTCTAGCTTGCATAGGAATATAAGCACTTCGTTTGTGGAGATGGGTTCTGGACGCTGGTTTAAGGCAGTAATTCGCTTAAAGAAAGTGAAAACCAGCAGTTCGAAACAAACTAAGGAGAAATTGGATGATTTGCAAAAAGATTCCCCAAGGTTTAAAAATGGTAGTACTAATGGGAACAGGAAGTCTCTTGGGATGCCAATTGAAGATGTAGCTGCAGTTCGGATTCAGACAGCATACCGAGCATATCGTGCCAGGAAAAATTTACGTCGCTTGAAAGGGGCCTTCAGACTGCAGAATCTGACTCAAGGCAATTCCGTTAGAAAGCATGCTACATCTACATTAGGCTATCTTCATTCATGGAGCAATATACAAGCTCAAATTAAGGCTCGTCGACTTTATATGGTGACAGAAGGACGACAGAGACAAAAAAGATTAGAAAATCAACGAAAACTTGAGGCTAAGCTTCATGATATAGAGGTGGAGTGGTGTGGGGGTGCAGACTCCATGGACGGGATTCTTTCAAGGATACATGAGAGAGAAGAAGCAGCTGTTAAGCGCGAACGTGCTATGGCATATGCATTCTCACATCAGTGGAGAGCAAACTCCAATGAGATGTATGGGTTGGGTAAAGATGAACTTGGTAAAGCTGATTGGGGTTGGAGCTGGAAAGAACGATGGATAGCTGCTCGTCCGTGGGAAAGCCGTGTACCATCTCAGTTTGATAGTCCAAAGAAATCTACAATTAAACAATCAAGCAAAATCAGTAAGAGAAACTCGCCATCCCCTAAAGCAAAAGTTTTGATTAAACCTCCTTCCCCGAATGGGAAATCAACTTCAAAGGCTCGGAGGTTGTCTTATCCAGCAACCGAGAAAACCAAGAAACTGGCTACAGAAGAAAAAGGCGTAAAAAATGACGAAGGGAATAATAAGAAAGAAGAAACAGCATCCTAA 1092 42.95 MGHGQSTLQQPLLFPQGLPSSLLLRLHKAGPVVYCLLFQNWSGYATVSSLHRNISTSFVEMGSGRWFKAVIRLKKVKTSSSKQTKEKLDDLQKDSPRFKNGSTNGNRKSLGMPIEDVAAVRIQTAYRAYRARKNLRRLKGAFRLQNLTQGNSVRKHATSTLGYLHSWSNIQAQIKARRLYMVTEGRQRQKRLENQRKLEAKLHDIEVEWCGGADSMDGILSRIHEREEAAVKRERAMAYAFSHQWRANSNEMYGLGKDELGKADWGWSWKERWIAARPWESRVPSQFDSPKKSTIKQSSKISKRNSPSPKAKVLIKPPSPNGKSTSKARRLSYPATEKTKKLATEEKGVKNDEGNNKKEETAS 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2367995 2373055 - Lsi01G002650.1 Lsi01g00265 652923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00265 363 MobiDBLite consensus disorder prediction 286 306 - -
Lsi01g00265 363 Gene3D - 65 161 - -
Lsi01g00265 363 MobiDBLite consensus disorder prediction 82 109 - -
Lsi01g00265 363 ProSiteProfiles IQ motif profile. 115 143 IPR000048 GO:0005515
Lsi01g00265 363 MobiDBLite consensus disorder prediction 282 363 - -
Lsi01g00265 363 MobiDBLite consensus disorder prediction 333 363 - -
Lsi01g00265 363 PANTHER IQ-DOMAIN 5-RELATED 61 341 - -
Lsi01g00265 363 MobiDBLite consensus disorder prediction 82 96 - -
Lsi01g00265 363 PANTHER IQ-DOMAIN 9 61 341 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00265 Lsi-Chr1:2367995 Lsi07g00304 Lsi-Chr7:3259617 8.06E-73 dispersed
Lsi01g00265 Lsi-Chr1:2367995 Lsi04g01418 Lsi-Chr4:21947617 7.34E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00265 - - csv:101220729 517.309