Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00276 ATGGGAAAGCATTCGAAGACCGGTTGCAAGTCGGCTTCCCACAAGCTATTTAAGGATAAGGCAAAGAACCGGGTTGATGATCTGCAAAGCATATTTGTGGATTTGCAGTATGCAAGGAAAGAGAGCCGCACAGTTGATGTGACAGTTCTCGAGGAACAAGTCCATCAGATGCTTCGTGAGTGGAAAGCTGAGCTGAACGAGCCATCTCCAGCATCCTCTTTGCAACAAGGTGGAAGTCTTGGGTCATTTTCATCGGACATTTGTCGACTGTTGCAACTTTGCGAGGAGGATGATGATGCATCTAGTCCATTAGCTGCTCCTAAGCCCGAACCTAATGAACAAAATTTGCAGGTTGGAGATACCATGGCACTGCAAGAGGTTCTTAGTATCACTGTTAACCTACTTCAGGGATTTAATGTGACTCGTGGACACCAAGAACCAAGCTTCCCTTTAGTTGATCAATGCAAGAACTCCCCTTCAGGAGTTCATGGTATGGCTATGAATAACTTGGAAGGACCTACACATTTGGAGTGTCATCAATTTGATTTACATCAAGGCATTGAGCACAACTTTTACTCTATCCTTAACGGTAGAGAATTGTGTGGGGAGGGCGCAATTCCTCATGTTTCTAGCTACTGTCCCAGCATTTGCCCTCCACCTGCTGCTTTTTTAGGCCCAAAATGTGCGCTTTGGGATTGCCCACGACCTGCCCAAGGGATGGATTGGTGTGAGGACTACTGTAGCAGCTTTCATGCTGCCTTAGCATTGAATGAAGGCCCTCCTGGAATGGGTCCAGTTTTACGACCTGGTGGAATTGGTCTGAAGGATGGTTTGCTTTTTGCTGCTCTTAGTGCGAAGGCACAAGGGAAAGATGTTGGTATCCCTGAATGTGAGGGAGCTGCCACAGCAAAATCCCCATGGAATGCTCCTGAGCTTTTTGATCTGTCAATATTGGAGGGTGAGATGATTAGGGAGTGGCTTTTCTTTGATAAGCCTCGTAGAGCATTTGAGAGTGGGAATAGAAAGCAGAGGTCACTGCCTGATTACAGTGGACGTGGTTGGCATGAGTCAAGAAAGCAAGTGATGAATGAGTTTGGAGGGCTGAAAAGATCTTATTACATGGATCCTCAGCCATTGAACCACTTTGAGTGGCATCTTTATGAATATGAAATTAATAAGTATGATGCCTGTGCTTTGTATAGATTGGAGCTGAAACTTGTTGATGGGAAAAAAGGTTCTAAGGCAAAGGTATCTAATGATTCAGTTGCTGATTTACAGAGGCAAATGGGGAGATTGACTGCTGAATTTCCTGATAATAAACGCTTTGTTAAGGGGAGGACCAGAATTAACACAAAAGTTGGTCTTGGAAATGTTTACCCCTCGGCAAATAGAGTCATGCCGCCCAACGGAACATATGACTATATGCTTCATGCACAATATGATTACCTTGTGGAGAATTTGAGCGAATATTACCTTACATAG 1482 44.53 MGKHSKTGCKSASHKLFKDKAKNRVDDLQSIFVDLQYARKESRTVDVTVLEEQVHQMLREWKAELNEPSPASSLQQGGSLGSFSSDICRLLQLCEEDDDASSPLAAPKPEPNEQNLQVGDTMALQEVLSITVNLLQGFNVTRGHQEPSFPLVDQCKNSPSGVHGMAMNNLEGPTHLECHQFDLHQGIEHNFYSILNGRELCGEGAIPHVSSYCPSICPPPAAFLGPKCALWDCPRPAQGMDWCEDYCSSFHAALALNEGPPGMGPVLRPGGIGLKDGLLFAALSAKAQGKDVGIPECEGAATAKSPWNAPELFDLSILEGEMIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKYDACALYRLELKLVDGKKGSKAKVSNDSVADLQRQMGRLTAEFPDNKRFVKGRTRINTKVGLGNVYPSANRVMPPNGTYDYMLHAQYDYLVENLSEYYLT 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2456480 2460158 - Lsi01G002760.1 Lsi01g00276 652934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00276 493 PANTHER TRANSCRIPTION FACTOR VOZ1 1 493 IPR039277 GO:0006355|GO:0048578
Lsi01g00276 493 PANTHER TRANSCRIPTION FACTOR VOZ1 1 493 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00276 Lsi-Chr1:2456480 Lsi10g00087 Lsi-Chr10:1457206 1.25E-177 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24562 None None None None Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00276 - - csv:101219536 962.214