Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00276 ATGGGAAAGCATTCGAAGACCGGTTGCAAGTCGGCTTCCCACAAGCTATTTAAGGATAAGGCAAAGAACCGGGTTGATGATCTGCAAAGCATATTTGTGGATTTGCAGTATGCAAGGAAAGAGAGCCGCACAGTTGATGTGACAGTTCTCGAGGAACAAGTCCATCAGATGCTTCGTGAGTGGAAAGCTGAGCTGAACGAGCCATCTCCAGCATCCTCTTTGCAACAAGGTGGAAGTCTTGGGTCATTTTCATCGGACATTTGTCGACTGTTGCAACTTTGCGAGGAGGATGATGATGCATCTAGTCCATTAGCTGCTCCTAAGCCCGAACCTAATGAACAAAATTTGCAGGTTGGAGATACCATGGCACTGCAAGAGGTTCTTAGTATCACTGTTAACCTACTTCAGGGATTTAATGTGACTCGTGGACACCAAGAACCAAGCTTCCCTTTAGTTGATCAATGCAAGAACTCCCCTTCAGGAGTTCATGGTATGGCTATGAATAACTTGGAAGGACCTACACATTTGGAGTGTCATCAATTTGATTTACATCAAGGCATTGAGCACAACTTTTACTCTATCCTTAACGGTAGAGAATTGTGTGGGGAGGGCGCAATTCCTCATGTTTCTAGCTACTGTCCCAGCATTTGCCCTCCACCTGCTGCTTTTTTAGGCCCAAAATGTGCGCTTTGGGATTGCCCACGACCTGCCCAAGGGATGGATTGGTGTGAGGACTACTGTAGCAGCTTTCATGCTGCCTTAGCATTGAATGAAGGCCCTCCTGGAATGGGTCCAGTTTTACGACCTGGTGGAATTGGTCTGAAGGATGGTTTGCTTTTTGCTGCTCTTAGTGCGAAGGCACAAGGGAAAGATGTTGGTATCCCTGAATGTGAGGGAGCTGCCACAGCAAAATCCCCATGGAATGCTCCTGAGCTTTTTGATCTGTCAATATTGGAGGGTGAGATGATTAGGGAGTGGCTTTTCTTTGATAAGCCTCGTAGAGCATTTGAGAGTGGGAATAGAAAGCAGAGGTCACTGCCTGATTACAGTGGACGTGGTTGGCATGAGTCAAGAAAGCAAGTGATGAATGAGTTTGGAGGGCTGAAAAGATCTTATTACATGGATCCTCAGCCATTGAACCACTTTGAGTGGCATCTTTATGAATATGAAATTAATAAGTATGATGCCTGTGCTTTGTATAGATTGGAGCTGAAACTTGTTGATGGGAAAAAAGGTTCTAAGGCAAAGGTATCTAATGATTCAGTTGCTGATTTACAGAGGCAAATGGGGAGATTGACTGCTGAATTTCCTGATAATAAACGCTTTGTTAAGGGGAGGACCAGAATTAACACAAAAGTTGGTCTTGGAAATGTTTACCCCTCGGCAAATAGAGTCATGCCGCCCAACGGAACATATGACTATATGCTTCATGCACAATATGATTACCTTGTGGAGAATTTGAGCGAATATTACCTTACATAG 1482 44.53 MGKHSKTGCKSASHKLFKDKAKNRVDDLQSIFVDLQYARKESRTVDVTVLEEQVHQMLREWKAELNEPSPASSLQQGGSLGSFSSDICRLLQLCEEDDDASSPLAAPKPEPNEQNLQVGDTMALQEVLSITVNLLQGFNVTRGHQEPSFPLVDQCKNSPSGVHGMAMNNLEGPTHLECHQFDLHQGIEHNFYSILNGRELCGEGAIPHVSSYCPSICPPPAAFLGPKCALWDCPRPAQGMDWCEDYCSSFHAALALNEGPPGMGPVLRPGGIGLKDGLLFAALSAKAQGKDVGIPECEGAATAKSPWNAPELFDLSILEGEMIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKYDACALYRLELKLVDGKKGSKAKVSNDSVADLQRQMGRLTAEFPDNKRFVKGRTRINTKVGLGNVYPSANRVMPPNGTYDYMLHAQYDYLVENLSEYYLT 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2456480 2460158 - Lsi01G002760.1 Lsi01g00276 652934

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00276 493 PANTHER TRANSCRIPTION FACTOR VOZ1 1 493 IPR039277 GO:0006355|GO:0048578
Lsi01g00276 493 PANTHER TRANSCRIPTION FACTOR VOZ1 1 493 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00276 - - - csv:101219536 962.214
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00276 Lsi-Chr1:2456480 Lsi10g00087 Lsi-Chr10:1457206 1.25E-177 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g159 . . Bda02g00505 Bda09g01233 . Bpe01g00454 . . . . Cma03g01301 . Car03g01162 Car07g00179 Sed14g1495 . Cpe10g00166 Bhi03g00349 Tan03g2527 Cmetu04g0422 . . . . Cla01g02285 Cam01g2397 Cec04g2043 Cco04g2121 Clacu01g2418 Cmu01g2282 Cre04g1950 Cone1ag0187 Cone5ag1682 . . Lsi01g00276 Csa06g03664 . Cme08g00260 Blo08g00225 Blo14g00415 . . . Bpe08g00403 Bma07g00407 Bma11g00428 . Cmo03g01297 Cmo07g00212 . . . . Cpe19g01043 . . . . . . . . . . . . . . . . . Chy02g00265 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi01g00276 . 2 492 VOZ-9 Transcription Factor Family AT1G28520 70.4 2.5e-199 691.8
Lsi10g00087 . 6 494 VOZ-9 Transcription Factor Family AT1G28520 53.2 2.9e-131 465.7
Lsi01g00276 . 27 432 VOZ-9 Transcription Factor Family AT2G42400 50.7 4.8e-104 375.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004233 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24562 None None None None Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00276 Lsi_Chr01 FPKM 4.37037 4.485342 5.018833 4.910552 5.16221 3.697815 3.908188 2.949203 1.866055 3.031434