Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00279 ATGGGTGCTCTCATCGATCTCAATACTACTGAAGAAGATGAATCTCCCTCTTCTGCTGGTTCCTCTGTTTCTTCTTCCTCCGCTTCTGCTTTAACCTCCTCTCCTTCCCCTTCTGTTACTTCCTCAATTTGCTTGGAGCTATGGCATGCTTGTGCTGGCCCTCTCACCTCTTTGCCCAAGAAAGGGGCTTTGGTTGTCTACTTGCCTCAGGGTCACTTCGAGCAGATGCAAGAATTTCCGGCTACGCCTTATGATCTCCCTCCCCACATCCTCTGTCGCGTCATTGATGTTCAGCTTCACGCTGAAGCTGGGAGTGACGAGGTTTATGCTCAGGTTTCTTTGTTTCCTGAAAACGAGCAAATGGAGCACAAGATGCAGGAAGAGATAAACAATGACAGTGAGGAGGAGGATGTTGAAGAAGGTGAGAAGACTACAACACCCCACATGTTCTGCAAGACTCTTACTGCTTCTGACACTAGTACTCATGGAGGCTTCTCCGTCCCCAGACGTGCAGCTGAGGATTGCTTCCCGCCATTGGACTATAATCAACAGAGGCCTTCACAAGAGCTTGTAGCAAAGGATCTCCTTGGGCTAAAATGGAAGTTCAGGCACATATATCGGGGGCAGCCTAGGAGGCATTTGCTAACCACTGGATGGAGTGCTTTCGTGAACAAGAAAAGGCTTGTTTCTGGAGATGCAGTGCTTTTTCTTAGGGGCAATGATGGTGAATTAAGACTGGGAATTCGAAGAGCTGCACAGCTTAAAAATGGTTCTGCCTTTTCTAATATTAGCAGTCAGCAGCTCAACTCTAGTAGCATCATGGATGTGGTTAATGCGATATCTACAAAAAGTTCCTTTAGCGTATACTACAATCCCAGGGCTACCTCTTCACAGTTTGTCTTGCCTTTTCACAAGTTCTTGAAGAGCATTAACCATTCTTTCTCTGTTGGAATGAGGTTTAGGCTGAGTTTTGAAACCGAGGATGCTGCAGATCGAAGACACACTGGACATATAACTGGAGTTGGCGATGTGGATCCTATCAGATGGCCAGGATCAAGGTGGAGGTCCCTTATGGTGAGGTGGGACGATGGCGAAACTAACAGGCATGGCAGGGTTTCCCCTTGGGAGATCGAGCCCTCTGGTTCTGTTTCTTTGTCTGGCAACTTGGTTCCACCTGGTCTGAAAAGAACCAGGATTGGGCTTTCTTCCACAAAACTAGATTTTCCAGTTCCAAATGGGATTGGAGCATCAGACTTTGGGGAATCTTTAAGGTTCCAAAAGGTCTTGCAAGGTCAAGAAATTTTAGGTTACAGCACTCCCACTGATGGTGACGACAACAATTGTAATCCACCTGAAAAGAGGAGATTGTTTCCTGGTTTACATGGTTCTGGGATAGCTCTGATTAGAAATGGTCCAAGAAACCCACTTATCAATTCCGAAACTTCCTCCCGGGGTATCGTGTTTGATGAATCCTTCCAATACCATAAGGTCTTGCAAGGTCAAGAAATATTTCCAAGTCCCTTTTATGGTAGGGCCATGGCCACCAATGAAGTTAAGGCAAGTGGTGGTTGCGGTTCTGTCGACGGCATTCGATTGTCTAGGACTAAAGATGGATGGCCCATGACAATGCAATGTGAAAATTTCCTCACACGGTCTTCCATTCCTTCTGTACAAGTCTCATCACCATCTTCTGTATTCATGTTTCAGCAGTCAATGGTTCCTGTTCAAAGCTTTAATTCACATAACCGTGGCAATTTCGCAGAACAGAGGATTATGAACAAAAGTACATCCCATAATTCTGGGACAGCATTTATGACCGACCATAGCTTGAATACTGAAGTCACCCCACAAGGCATGCGTCCCACTTCATTGGGCGAGCAGAATCAGCTCGGCCTATCACATCATTCAACAACAACAGCATCACCAGCGTTTACAGGCAGTAAAGATCTGTCTTCAACTTGCAAAGCTGGCTGTAGATTGTTTGGTTTTTCATTGACAGAGGAAAAGAATGTTGGGAATACAGACAAGGCTTCTCCAGCAACAACTCCCATTAATGCAGGAACAACCACTCTTTTGTCCAATATTGGATTACAATGTCCTTTGAAGTCTCCACTGATGAGCAAGGTGGTTGGAAGCAACTGTACCAAAGTAAGTAACTTATCTGCCCGTGCCGTAGAGGCAATATATTTTGCATAA 2196 45.54 MGALIDLNTTEEDESPSSAGSSVSSSSASALTSSPSPSVTSSICLELWHACAGPLTSLPKKGALVVYLPQGHFEQMQEFPATPYDLPPHILCRVIDVQLHAEAGSDEVYAQVSLFPENEQMEHKMQEEINNDSEEEDVEEGEKTTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLLGLKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFLRGNDGELRLGIRRAAQLKNGSAFSNISSQQLNSSSIMDVVNAISTKSSFSVYYNPRATSSQFVLPFHKFLKSINHSFSVGMRFRLSFETEDAADRRHTGHITGVGDVDPIRWPGSRWRSLMVRWDDGETNRHGRVSPWEIEPSGSVSLSGNLVPPGLKRTRIGLSSTKLDFPVPNGIGASDFGESLRFQKVLQGQEILGYSTPTDGDDNNCNPPEKRRLFPGLHGSGIALIRNGPRNPLINSETSSRGIVFDESFQYHKVLQGQEIFPSPFYGRAMATNEVKASGGCGSVDGIRLSRTKDGWPMTMQCENFLTRSSIPSVQVSSPSSVFMFQQSMVPVQSFNSHNRGNFAEQRIMNKSTSHNSGTAFMTDHSLNTEVTPQGMRPTSLGEQNQLGLSHHSTTTASPAFTGSKDLSSTCKAGCRLFGFSLTEEKNVGNTDKASPATTPINAGTTTLLSNIGLQCPLKSPLMSKVVGSNCTKVSNLSARAVEAIYFA 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2484558 2490215 + Lsi01G002790.1 Lsi01g00279 652937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00279 731 MobiDBLite consensus disorder prediction 10 36 - -
Lsi01g00279 731 SMART B3_2 150 252 IPR003340 GO:0003677
Lsi01g00279 731 MobiDBLite consensus disorder prediction 1 36 - -
Lsi01g00279 731 PANTHER AUXIN RESPONSE FACTOR 3 34 722 - -
Lsi01g00279 731 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 34 722 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lsi01g00279 731 ProSiteProfiles B3 DNA-binding domain profile. 150 252 IPR003340 GO:0003677
Lsi01g00279 731 Pfam B3 DNA binding domain 150 251 IPR003340 GO:0003677
Lsi01g00279 731 Gene3D - 148 252 IPR015300 -
Lsi01g00279 731 SUPERFAMILY DNA-binding pseudobarrel domain 145 259 IPR015300 -
Lsi01g00279 731 CDD B3_DNA 148 250 IPR003340 GO:0003677
Lsi01g00279 731 Gene3D - 313 387 - -
Lsi01g00279 731 Pfam Auxin response factor 277 357 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00279 Lsi-Chr1:2484558 Lsi10g01284 Lsi-Chr10:17084884 3.51E-152 dispersed
Lsi01g00279 Lsi-Chr1:2484558 Lsi01g00116 Lsi-Chr1:1225345 2.44E-108 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24563 PF02362 B3 1.60E-21 CL0405 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00279 K14486 - csv:101220018 1276.92