Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00288 ATGTCTTTATGCTCCTTCCTTTTCCTCCTCTGTTTCCCTCTGTTTTCCTTCGCCCTGAACCAAGAGGGTCATGTTCTCCAGGACTTTAGGCGTTCCATCGTCGATCATAACAATGTCTTCTCCTCCTGGCACCCGGCCGACCCGGATCCTTGTTTATGGAGCGGCATCACCTGCGACGCCCATCATCACGTCATCACCATCGATCTCTCCAGCTCTAGTATTTCTTCTTCTTTCCCTCTTCAACTCTGTAAGCTTCCGCATCTCCTCTACCTTTCTCTTTACAATAATACCTTCCATTCCCTTCTTCCCCTTGGGATTTCCAACTGTACCAGTCTCGAGTTTCTTGACCTTGGCCAAAATTTTCTCACCGGTTCTCTACCTCCCTCCCTTGCTGATTTGCCCAATCTCCGCTACTTGGATTTGTCTGGCAACAATTTCTCCGGCGAAGTACCGCCTTCCTTCGGTCGGTTTCAGAAACTTGAAGCGTTTTCCATTATTTTGAATCTTGTGAGTGGTACCATTCCTCCGTTTCTTGGGAACATTACTACTCTTAGGATGTTGAATATGTCTTACAACTCGTTTTCGCTTGGAAGAATCCCGCCGGAGCTGGGTAATCTGGTGAATCTTGAGGTTCTTTGGTTGACGGCATGTAACTTAGTGGGGGAGATTCCTGAGTCGCTGATAGGGCTCCAGCGACTCGTTCTTCTGGATTTGAGCATTAACAATCTTACCGGGCCGTTCCCGCGGGCGCTGACGGAGTTAACCCACGTGACCCAGATTGAGTTGTTTGGCAATTCGTTGTCCGGCGTGTTACCAGATGGGTTTTCGAAACTCAAGTCGCTGCGGTTGTTGGACATCTCGATGAATAATCTCACCGGGCCAATTCCGAGTAGCTTGTTTGAGTTGCCGCTTGAAAGCCTTAATGCGTTTGAGAATGATTTCGAGGGCAGCTTGCCGGAAAGCATGGGGGAGTCGAGGACTTTGACAGAGATAAAGCTATTTGGCAACAGATTCACGGGGTCGTTACCAACACATTTGGGGAAATATTCGCCTCTGGAATCGTTGGACTTTTCAGACAACTCCTTTTCCGGCAGGCTTCCCGAGGCCTTGTGTGAGAACGGGGCATTGATAGAGATAATGATGATCAACAACCGCCTTTCCGGCGAACTCCCGTCGAGTCTCGGCGATTGCCATAGTCTTACCAGGATCCGATTAGGGAACAACAATTTTACGGGTTCTGTACCAGAAAATCTATGGGGACTTCCGGATGTTTCTCTTCTGGAACTTGCAAACAACACCTTCTCTGGCCCAATCTCAAAGAAAATAGCCAATTCCAAGATGCTGAGTTTGCTTCTTATTTCTAATAACAATTTCTCAGGAACAATTCCGGAGGAGATTGGTTCTTTGAAGAATCTGGTAGAGTTTTCCGGTGACCATAACAAGTTCACAGGAAATATCCCTGAGAGCCTTACCAAAATGGTTCGGCTTGCCAAGTTAGATCTTCAAACCAACAGGCTTTCCGGGTTGCTCAGCTACAAGCTTGATGCCTGGGGGAGGCTGAATGAGCTCAATCTGGCCAATAACAACTTCTCTGGCCAAATTCCCCCGGAAATTGCTAGCTTGCCAGTGCTTAATTACCTCGATCTTTCAGGCAATCAATTTTCTGGGGAAATCCCAAATGGGTTACAGAATTTGAACCTCAATGTTCTGAATCTATCATATAACCACTTAACTGGAACGCTTCCTTCCTATTTCGAGAGATCAATGTACAAAAATAGCTTTCTGGGTAATCCTGATCTCTGTCGGGAGGAAAATGGTGCGTGTCAACCAATTCATTCTACAAGAAATGGAGGAGGAGGAGGTTGCAATGAGAGCGGAGGTTGCATTTGGCTGCTGCGATCCGCCTTTGTATTTGCAGGTGTACTTTTCTTTGTTGGAGTGGTTTTGTTCCACGTCAAGTACAAGACATTCATCAAGGCAAGAAGTTTCAACATCAAATCTAAATGGACAATGATATCGTTCCAAAAGCTCTCTTTTGGCGAGGACGAGATTGTGGGTTCCCTGGATGAAGACAATGTGATAGGCAGTGGAGGCTCTGGCCTAGTTTACAAGGTTGCTCTCGCCAATGGCGAAACCATTGCAGTTAAGAAACTTTGGCCCGAGTTGCCCGACGATGGCATGAGCATTGATCTCGAGAAAAATTGGACTGAAGTTAATGTTTTTGATGCAGAAGTGAAGACTTTGGGTGAAATCAGGCACAAAAACATAGTGAAACTTTTGTGTTGTTGTACCAATGGAGACTGCAGGCTTTTGGTCTTTGAATACATGCCTAATGGGAGCTTAGGTGATATGCTTCATGGCAGTAGAAGTGAGTTATTGGATTGGCCAACAAGATACAAGATAGCCTTGGATGCTGCTGAGGGGCTTTCTTATCTTCATCATGATTGTGTTCCTCCAATTGTACACAGAGATGTCAAGTCCAATAACATCTTGTTGGATGCCGAATTCGGAGCTAAGATAGCAGATTTCGGAGTAGCTATGGCTGTCGATATATCTGAGGTTAAATCCATGTCAGTGATTGCTGGTTCTTGTGGTTATATTGCCCCAGAGTACGCTTATACATTGAAAGTGAATGAGAAGAGCGACATCTTTAGCTACGGGATGGTTATCCTTGAATTGATAACGGGGAAGCGGCCAACCGACTCCGAGTTCGAAGAAAACGATCTGGTGAAATGGGTATGCACCACTTTAGAAGAGGAAGGCATCAACCATATTCTAGACCCGAAATTGGATTCCTGTCACCAGGAGGAAATGTTGAAGGTCCTCAACATTGGCCTCCTATGCAGCAGCCCTCTACCTATCAACCGCCCATCCATGAGACGAGTCGTTACAATGTTGTTAGAAGTTCGTACGGATAGCAATTCAAAGATTGGAAGGAGAAAGGGAAGATTAACTCCATATTATTTCGAGGATGTTTCGGATAGTGGAAATGTGGTATAG 3000 45.83 MSLCSFLFLLCFPLFSFALNQEGHVLQDFRRSIVDHNNVFSSWHPADPDPCLWSGITCDAHHHVITIDLSSSSISSSFPLQLCKLPHLLYLSLYNNTFHSLLPLGISNCTSLEFLDLGQNFLTGSLPPSLADLPNLRYLDLSGNNFSGEVPPSFGRFQKLEAFSIILNLVSGTIPPFLGNITTLRMLNMSYNSFSLGRIPPELGNLVNLEVLWLTACNLVGEIPESLIGLQRLVLLDLSINNLTGPFPRALTELTHVTQIELFGNSLSGVLPDGFSKLKSLRLLDISMNNLTGPIPSSLFELPLESLNAFENDFEGSLPESMGESRTLTEIKLFGNRFTGSLPTHLGKYSPLESLDFSDNSFSGRLPEALCENGALIEIMMINNRLSGELPSSLGDCHSLTRIRLGNNNFTGSVPENLWGLPDVSLLELANNTFSGPISKKIANSKMLSLLLISNNNFSGTIPEEIGSLKNLVEFSGDHNKFTGNIPESLTKMVRLAKLDLQTNRLSGLLSYKLDAWGRLNELNLANNNFSGQIPPEIASLPVLNYLDLSGNQFSGEIPNGLQNLNLNVLNLSYNHLTGTLPSYFERSMYKNSFLGNPDLCREENGACQPIHSTRNGGGGGCNESGGCIWLLRSAFVFAGVLFFVGVVLFHVKYKTFIKARSFNIKSKWTMISFQKLSFGEDEIVGSLDEDNVIGSGGSGLVYKVALANGETIAVKKLWPELPDDGMSIDLEKNWTEVNVFDAEVKTLGEIRHKNIVKLLCCCTNGDCRLLVFEYMPNGSLGDMLHGSRSELLDWPTRYKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDAEFGAKIADFGVAMAVDISEVKSMSVIAGSCGYIAPEYAYTLKVNEKSDIFSYGMVILELITGKRPTDSEFEENDLVKWVCTTLEEEGINHILDPKLDSCHQEEMLKVLNIGLLCSSPLPINRPSMRRVVTMLLEVRTDSNSKIGRRKGRLTPYYFEDVSDSGNVV 999
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2547424 2551247 - Lsi01G002880.1 Lsi01g00288 652946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00288 999 SUPERFAMILY Protein kinase-like (PK-like) 684 966 IPR011009 -
Lsi01g00288 999 SMART serkin_6 688 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00288 999 Gene3D Phosphorylase Kinase; domain 1 667 775 - -
Lsi01g00288 999 Pfam Leucine Rich repeats (2 copies) 110 146 IPR025875 -
Lsi01g00288 999 Pfam Protein kinase domain 690 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00288 999 Pfam Leucine rich repeat N-terminal domain 20 59 IPR013210 -
Lsi01g00288 999 SUPERFAMILY L domain-like 46 297 - -
Lsi01g00288 999 ProSitePatterns Protein kinases ATP-binding region signature. 694 717 IPR017441 GO:0005524
Lsi01g00288 999 Gene3D Ribonuclease Inhibitor 244 612 IPR032675 -
Lsi01g00288 999 Gene3D Ribonuclease Inhibitor 173 243 IPR032675 -
Lsi01g00288 999 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 6 978 - -
Lsi01g00288 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 820 832 IPR008271 GO:0004672|GO:0006468
Lsi01g00288 999 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 6 978 - -
Lsi01g00288 999 SUPERFAMILY RNI-like 304 588 - -
Lsi01g00288 999 SMART LRR_typ_2 254 277 IPR003591 -
Lsi01g00288 999 SMART LRR_typ_2 85 108 IPR003591 -
Lsi01g00288 999 SMART LRR_typ_2 206 230 IPR003591 -
Lsi01g00288 999 SMART LRR_typ_2 493 516 IPR003591 -
Lsi01g00288 999 SMART LRR_typ_2 278 302 IPR003591 -
Lsi01g00288 999 SMART LRR_typ_2 133 157 IPR003591 -
Lsi01g00288 999 SMART LRR_typ_2 541 564 IPR003591 -
Lsi01g00288 999 ProSiteProfiles Protein kinase domain profile. 688 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00288 999 Gene3D Transferase(Phosphotransferase) domain 1 776 986 - -
Lsi01g00288 999 Pfam Leucine rich repeat 519 577 IPR001611 GO:0005515
Lsi01g00288 999 Gene3D Ribonuclease Inhibitor 18 172 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00288 Lsi-Chr1:2547424 Lsi11g01398 Lsi-Chr11:22525235 0 dispersed
Lsi01g00288 Lsi-Chr1:2547424 Lsi02g00781 Lsi-Chr2:7205457 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83236 PF00069 Pkinase 2.60E-41 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00288 - - csv:101223091 1553.88