Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00289 ATGGAGTCTCAGTTGCTCTCACGCGCCACTTCCTTCGCCGGTGGCATTCCCACCCTCCGCAAGTTGCACAGAGACACCACTACTAACAACAACCATGTCGCCTTCGTCCACACCAGGCCCATCGCCGAGGGAGCCAACTTGATCTGGGGAAGACAACTCCGCCCGTCTTTACTGCTCGATACGCCGCATCTAGTCTCTGCTAAACGGGAGACGATTCGCCCTACCTTTGCGGCGGCCTCCTCTTCTCCCGCCGGAGGCAGCGATTCCGCCGGGGAGGCGAAGGTTGCTCCGGTGGGTTTCTTAGAGAAGAATCCGGCGTTGGTCACCGGATTCTTTTTCTTTATGTGGTACTTCTTGAACGTGATTTTCAATATTCTCAACAAGAAGATATATAATTACTTCCCCTACCCTTATTTTGTGTCGGTGATCCATTTGTTTGTTGGGGTGGTTTACTGTTTGATAAGCTGGGCCGTGGGTCTTCCTAAGCGAGCACCTATTGATTCGACCCTCCTGAAGTTGCTGATCCCTGTAGCTTTCTGTCATGCACTTGGCCATGTCACTAGCAATGTCTCATTCGCAGCTGTTGCTGTCTCATTCACTCACACAATCAAAGCTCTGGAACCGTTCTTTAACGCTGCCGCTTCTCAATTCATTTTGGGGCAATCCATTCCCATTACCTTGTGGCTTTCATTGGCTCCCGTTGTCCTTGGTGTGTCACTGGCATCCTTGACTGAGCTTTCATTTAACTGGACTGGCTTTATTAGTGCTATGATTTCCAATATCTCCTTTACCTACAGAACCAAAGTTGGTCTAACCAAATTCGTCTCAGATCTCTTCTGGGTAGGGATGTTTTATCACCTTTACAATCAGTTAGCAACCAACACCTTGGAGAGGGTGGCACCACTTACCCATGCAGTTGGAAATGTGCTGAAACGTGTATTTGTGATTGGATTCTCCATCATTGTCTTTGGCAACAAAATCTCTACACAGACTGGTATTGGAACCAGCATTGCAATTGCAGGAGTAGCACTTTACTCTTACATCAAGGCTAAGATGGAAGAAGAGAAACGATTTTATTGTTTGGACAGCGAACAAAGGTGGCTTGAAGAAGCATTGGATGGAGGTGATGGGAAGCATGGAATTGAGGGGAGGATTTGGTGTTGTAAATTTTAA 1173 47.66 MESQLLSRATSFAGGIPTLRKLHRDTTTNNNHVAFVHTRPIAEGANLIWGRQLRPSLLLDTPHLVSAKRETIRPTFAAASSSPAGGSDSAGEAKVAPVGFLEKNPALVTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLFVGVVYCLISWAVGLPKRAPIDSTLLKLLIPVAFCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQSIPITLWLSLAPVVLGVSLASLTELSFNWTGFISAMISNISFTYRTKVGLTKFVSDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIIVFGNKISTQTGIGTSIAIAGVALYSYIKAKMEEEKRFYCLDSEQRWLEEALDGGDGKHGIEGRIWCCKF 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2560564 2565038 + Lsi01G002890.1 Lsi01g00289 652947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00289 390 SUPERFAMILY Multidrug resistance efflux transporter EmrE 150 244 - -
Lsi01g00289 390 PANTHER BNAC02G47130D PROTEIN 267 363 - -
Lsi01g00289 390 PANTHER SOLUTE CARRIER FAMILY 35 41 267 - -
Lsi01g00289 390 SUPERFAMILY Multidrug resistance efflux transporter EmrE 267 347 - -
Lsi01g00289 390 PANTHER SOLUTE CARRIER FAMILY 35 267 363 - -
Lsi01g00289 390 Pfam Triose-phosphate Transporter family 268 346 IPR004853 -
Lsi01g00289 390 Pfam Triose-phosphate Transporter family 108 267 IPR004853 -
Lsi01g00289 390 PANTHER BNAC02G47130D PROTEIN 41 267 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00289 Lsi-Chr1:2560564 Lsi04g00366 Lsi-Chr4:3660619 2.79E-130 dispersed
Lsi05g00616 Lsi-Chr5:7589459 Lsi01g00289 Lsi-Chr1:2560564 9.81E-12 dispersed
Lsi01g00289 Lsi-Chr1:2560564 Lsi04g01225 Lsi-Chr4:18936200 3.68E-53 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00289 K15283 - csv:101220728 645.966