Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00290 ATGGAAGCTGCTGCCTCCGACGGCGAAAATCACAACCAGAATAATGATAATATTAACAAAATTAGTAACTCAAGTGAGGGTCTTAGCAAGCCCAAGCGCCAGATGAAGACTCCGTTTCAGCTTGAAACCCTCGAGAAAGCCTATGCTTTGGAGACTTACCCATCGGAGTCGACAAGGGCTGAACTGTCGGAGAAATTGGGGCTCACCGATCGGCAATTGCAGATGTGGTTTTGTCATAGGAGGTTGAAGGACAAGAAGGAACCGGTGAAGAAACCCCGGAAGGTGGCACCCGCACCCCCCTTGCCGTTGCCTGATTCTCCCATTGACGAATTGAGAGTAGTGGCCGAGCCGGGTAGTGATTACGCTTCAGGGTCGGGCTCGGGTTCAAGTCCATTTGGTGATGTTGGGTTGCGTAATGTGGCACCTAGAAGTGTTGGAGATGATATGCCAATGATGAGAAGGTATTATGAACCTTCACGGTCTGTTATGGAACTTAGAGCTATTGCTTGTGTGGAGTCGCAGTTGGGAGAGCCATTGAGGGAGGACGGACCTATTCTAGGGATTGAATTTGATCCACTACCACCTGATGCTTTCGGAGCACCTATAGTATGCTCAGTTGCTCTTGCATTAGACGTACCCCTTCTTATGTTGTGTGATGTATCAACAGGGACGAGCATAAGAGTGGCAGAACAGCAGAAGCGATCTGGACACTCGTATGGGGATAAATATGAACAACGGGATGCAAAATCAAATAAAGTGACTGCAAGGGGATTCCCCGAATATCCATTTATGCCAGACCAGTCTAATATTAGAGCTGATGCGTATGGTCCAGTTTCCCAATCACATTATCCAGATTCATTAGGCGAGGTTTCAGCAGCCAGGACACCATCATTTTTGCTTGGTCATGAACAGTTGAACAGGAACCATAATTACCACAGTCAGGTCTCAAGGGTTCGTCTTCTGTCTCAACAGGAGAAGCAGGGAGTTGCAATTCCATCTCCTGCTGAAGACAATGCATTTGGCCCTCCAAGGGATTCTTTTGCAAGCATCAGAATGAATTCTCAGTTTACTGAACACCCAATTGTTGGACAAGAAAATTCGTATGTGTTGCCTGATGGGCATGTTTTTCCAAACGATGTCATGATTAGGATGGAAAGGAAACGCAAGAGTGAAGAAGCTCGTCTGAGTAAAGAAGCTGAAGCCCATGAAATTAGAATGCGGAAAGAGCTTGAGAAACAAGATATTTTGAGGAAAAAGAATGAAGAACGTATAAGGAAAGAAATGGAAAAGCAAGATCGGGAAAGAAGGAGAGAAGAGGAGAGGTTACTGCGAGAAAAGCAGCGTGAAGCTGAGAGATTGAAGCGTGAGGAAAGACGTGAACATGAACGGAGGGAAAAGTTTCTGCAGAGGGAGTATATGAGGGCTGAGAAGAGGAAACAAAAAGAAGCTATTCGCAAAGAGAAGGAAGCTGTGAGACGCAAAGCTGCTATTGAGAAGGCTACTGCTCGTAGAATTGCCCGTGAGTCCATGGAGCTTATTGAGGATGAACAGCTTGAACTGATGGAACTGGCCGCTGCAAACAAAGGATTATCCTCCATATTAAGTCTTGATCATGACACTTTGCAGAATCTTGAATCTTTCCGAGATTATCTAGGTGCATTTCCACCCAAGTCTGTGCAATTGAAAAAACCTTTCGGCATTCAGCCTTGGATCAATTCAGAGGAGAACATTGGTAACCTTCTCATGGTCTGGAGATTTTTTATTACATTTTCTGATGTTCTAGAGCTGTGGCCCTTTACTCTTGATGAGTTTGTTCAAGCTCTTCATGATTATGATTCAAGATTACTGGGTGAGATTCACATTTGCCTTCTGAGATTGATTGTAAAAGACATTGAAGATGTTGCAAGAACACCTTCTGCTGGAATGGGAATGAACCAGAATGGTGTTGCCAACTCTGGAGGTGGACATCCACAGATTGTTGAAGGGGCATATGCATGGGGGTTTGACATTTGCAACTGGCAGAAGCATTTAAACCCGTTAACGTGGCCTGAAATATTTCGACAATTAGCACTATCAGCTGGATTTGGACCCCAGTTGAGAAAGAGGAGTTTGGCAATGTCTGAAATGCGTAGCAATGATGAGGCTAAATGTGGGGAGGACGTAGTTTCTACTCTACGCAATGGTTCAGCAGCTGAAAATGCATTTGCTATCATGCAAGAGAAAGGTTTGTTAGCTCCTCGGAGATCTAGGCATCGACTAACTCCTGGAACTGTCAAATTTGCTGCTTTTCATGTCCTTTCCCTAGAAGGCAGCGAAGGGTTAACAGTACTTGAACTAGCAGAGAAGATACAGAGATCTGGACTTAGAGATCTGTCTACAAGCAAGACACCAGAGGCTTCTATTTCTGTTGCTTTGACAAGGGATACTAAGCTTTTTGAAAGAATAGCTCCTTCCACATATCGCGTACGAGCGCCCTATAGGAAGAATCCAGATGATGCCGAGGACATACTTTCAGTAGCCAGAAAGAAAATTCAGGTATTCCAGAATGGGTTTTTGGCTGGAGAAGATGCTGATGACGTTGAAAGAGACGAAGAATCTGAATGTGATGATGTTGATGAAGATCCTGAAGTTGATGATATAGCAACGACTTCCTTGGTGAATGAAGATGTTAGCAAAGGAGATGCTAACTTAGGAGTTGAGAATGAGAAATTATGTCATGACATTGCTGGAAATCCACAAAATGAAATTGTCAAAGATATATCGCCGTTCCCCCTAGGTGGCTCGAAGGACACAAAATATTTAAGCCTACCTACAGAGCAGTATGCTGCTGTTGATGAGACTAATATTAGTGATCTTGATCAAGAAAATATGGAGATTGATGAAAGCAAGGAAGGTGAATCATGGATTCAAGGACTTACAGAAGGTGAATATCATGATCTTAGTGTTGAGGAGCGCTTGAATGCCCTTATTGTCTTGACCAGCATTGCAAATGAAGGAAACTCTATTCGCCTTGTTCTTGAGGATCGCTTGGAAGCTGCAAATGCTGTTAAGAAGCAAATGTTGACAGAGGCTCAGATTGATAAATCTCGGCTAAAAGAAGAGATCATTACTAAATCTGATTTTCCAATTCATATAGTGGGCAAGGTGGAAACTGAACTCAATGGTTCCACCATGGACGGTGGGCTAAGCCCTTTTCCTGTTGCCGACAATAAGAACAATGAAACAACCCCAAGCACTGCAGAAAACCCCCTCAGTAGTGTGCCGAATGAGAGGGGTACTTTGGTGCCAGATCTTTTCCCAGGCCCAGATAACTTCTTGGCTCAGCAATGTGGTCATGCTTCAAAGAGGTCACGTTCACAGTTAAAATCTTATATTGCCCATAGAGCTGAAGAAATGTACACATACAGGTCTTTGCCTCTTGGTCGAGATCGTAGGCGTAATCGGTACTGGCAATTTGTTGCTTCTTCTTCAAGCAATGATCCTGGTTCTGGGAGAATCTTTGTTGAAATGTATGATGGAAAGTGGAGGCTTATTGATTCTGAAGAGGGTTTTGAAGCTCTTTCATTGGCTTTGGACACACGGGGGATTAGAGAATCACACCTACGTATAATGTTGCAAATGATAGAGACATCATTTAAGGAAAATGTTCGGAGGAATCTGCAGTGTGCCAATGAGATGGTTCGAAGTGGAATTAATCCGAAAAATGAAAATGATGATTCGAGTTCTAGTCCTGATTGCAACACTGGTTTTAACAGTCCTAGCAGTACTGTTTGCGGGTTAAATTTGGATACAATGGTAACATCATCTTCATTCAGAATTGAGCTTGGGAGAAATGAAAACGAAAAGAAGGCTGCATTTAGAAGGTATCAAGACTTGCAGAGGTGGATGTTAAGAGAGTGCTTTAGCACATCAACGCTATGTGCCATGAAATTTGGAGAAAAAAGGTGCACTTCACTGTTGGACATTTGTGATTCTTGTCTGTGCTTGTTTGATTCTCAACATTCTCACTGTCCTTTTTGCCATCAAACTTTTGGCATTAGTGGGAATGATATTAGTTTTCTGGAACACAAATGTCACTGTGAGAGGGAAAGGAAGTCTAACCCTTTGGATACACACGTTTTAGATGCATCTCTTCCCCTCAAAAGTAGGTTGCTCAAGGCTCTCCTAGCTTTCATCGAGGTACAGGTTCCGTCAGAAGCTTTTCAATCGTTTTGGACAGAGCATAGGAAAGATTGGGGTGTCAGGATGAAATTATCATCATCTATTGAGGAGCTTCTACAGATTTTGACCCTGTTCGAAAGTGTAATTAAGCGGGACTTTCTAAAATCAGACTTTACGACAACTGATGAGCACCTGAGCTCATGTTCCATCTCTGGGAATATTATACATGACCCAGCAGATATTGGGTCTGTTCTTACATTACCATGGATTCCACGAACTAGCGCGGCTGTTGCTTTAAGGCTTTGTGAGGTAGATGCATCAATTTATTATATTGGTTGTGAGAAACCAGAGCCTGACCAGGATAAGGAAGTCGGAGAACATATCAACTTTTCCAGTAGATATGTCCAGGTTAAGAATGATGAACGGAATGAACTAAATGAGTATTATGATGATCTGATGAAGAATGAAAACTCAGCTGATCCAAAAAGTTTAAGGAACAGCTATAAACGCGGTCGAGGGAGTCGAGATTATGGACGTCGTAGAAAGTGGCAGAAAAAAGTTAATGGATCTAGATCTGGCCGGGTCCGGCAAAATGTTAAGAGTAACGAAAAGATGAATCAAGGACAGAGGGAGCTAGGACAAGGAACACAGGTTATGGGCGTACGGGGCCGCCGTACAGTAAGGAAGAGAAGGGCTGAGAAGAGCATTCCAGATGAAGGACTTTTGGGGCTGGTGCCTAGTAGTAGTACTCAGAATATGGATGAATCCCCAAAAGATTATCTTGGGGAATGGGAGGATGAAAAAATGGATAGGTTTGTCGATATGGAAGATGAAGAGAACGTGATGGATGATGAAGAGAATGTGATGGAAGATGAGGAGAATGAAGAGAATGTAAATAACGTAGAAGCGATGGACTCCGACGATGATGGCCAGGGAGTTGGGTATGAGCAAGGGGGCTGGGAGTTTGGGTTTGAAGGCACTTCCAACAGATGGAATGGTGATTTAGGGATAGGTAGTGATGAGGATGTGGATTTATCCGAGGACTACAATGGCACTGAAGAGGGGGGAAATGATGATATGGAGGAGTTAGATGTTGATAGCAGCGAGGAGTCGGATTGTTCACCAAATAGGATAGGCAACAACAATGGTGGAGGAGAATCCGCTGTTTCAGACGACTATAGTGATTAA 5349 43.48 MEAAASDGENHNQNNDNINKISNSSEGLSKPKRQMKTPFQLETLEKAYALETYPSESTRAELSEKLGLTDRQLQMWFCHRRLKDKKEPVKKPRKVAPAPPLPLPDSPIDELRVVAEPGSDYASGSGSGSSPFGDVGLRNVAPRSVGDDMPMMRRYYEPSRSVMELRAIACVESQLGEPLREDGPILGIEFDPLPPDAFGAPIVCSVALALDVPLLMLCDVSTGTSIRVAEQQKRSGHSYGDKYEQRDAKSNKVTARGFPEYPFMPDQSNIRADAYGPVSQSHYPDSLGEVSAARTPSFLLGHEQLNRNHNYHSQVSRVRLLSQQEKQGVAIPSPAEDNAFGPPRDSFASIRMNSQFTEHPIVGQENSYVLPDGHVFPNDVMIRMERKRKSEEARLSKEAEAHEIRMRKELEKQDILRKKNEERIRKEMEKQDRERRREEERLLREKQREAERLKREERREHERREKFLQREYMRAEKRKQKEAIRKEKEAVRRKAAIEKATARRIARESMELIEDEQLELMELAAANKGLSSILSLDHDTLQNLESFRDYLGAFPPKSVQLKKPFGIQPWINSEENIGNLLMVWRFFITFSDVLELWPFTLDEFVQALHDYDSRLLGEIHICLLRLIVKDIEDVARTPSAGMGMNQNGVANSGGGHPQIVEGAYAWGFDICNWQKHLNPLTWPEIFRQLALSAGFGPQLRKRSLAMSEMRSNDEAKCGEDVVSTLRNGSAAENAFAIMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSEGLTVLELAEKIQRSGLRDLSTSKTPEASISVALTRDTKLFERIAPSTYRVRAPYRKNPDDAEDILSVARKKIQVFQNGFLAGEDADDVERDEESECDDVDEDPEVDDIATTSLVNEDVSKGDANLGVENEKLCHDIAGNPQNEIVKDISPFPLGGSKDTKYLSLPTEQYAAVDETNISDLDQENMEIDESKEGESWIQGLTEGEYHDLSVEERLNALIVLTSIANEGNSIRLVLEDRLEAANAVKKQMLTEAQIDKSRLKEEIITKSDFPIHIVGKVETELNGSTMDGGLSPFPVADNKNNETTPSTAENPLSSVPNERGTLVPDLFPGPDNFLAQQCGHASKRSRSQLKSYIAHRAEEMYTYRSLPLGRDRRRNRYWQFVASSSSNDPGSGRIFVEMYDGKWRLIDSEEGFEALSLALDTRGIRESHLRIMLQMIETSFKENVRRNLQCANEMVRSGINPKNENDDSSSSPDCNTGFNSPSSTVCGLNLDTMVTSSSFRIELGRNENEKKAAFRRYQDLQRWMLRECFSTSTLCAMKFGEKRCTSLLDICDSCLCLFDSQHSHCPFCHQTFGISGNDISFLEHKCHCERERKSNPLDTHVLDASLPLKSRLLKALLAFIEVQVPSEAFQSFWTEHRKDWGVRMKLSSSIEELLQILTLFESVIKRDFLKSDFTTTDEHLSSCSISGNIIHDPADIGSVLTLPWIPRTSAAVALRLCEVDASIYYIGCEKPEPDQDKEVGEHINFSSRYVQVKNDERNELNEYYDDLMKNENSADPKSLRNSYKRGRGSRDYGRRRKWQKKVNGSRSGRVRQNVKSNEKMNQGQRELGQGTQVMGVRGRRTVRKRRAEKSIPDEGLLGLVPSSSTQNMDESPKDYLGEWEDEKMDRFVDMEDEENVMDDEENVMEDEENEENVNNVEAMDSDDDGQGVGYEQGGWEFGFEGTSNRWNGDLGIGSDEDVDLSEDYNGTEEGGNDDMEELDVDSSEESDCSPNRIGNNNGGGESAVSDDYSD 1782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2567422 2580038 + Lsi01G002900.1 Lsi01g00290 652948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 1539 1621 - -
Lsi01g00290 1782 Coils Coil 421 494 - -
Lsi01g00290 1782 Gene3D - 29 87 - -
Lsi01g00290 1782 ProSiteProfiles DDT domain profile. 574 633 IPR018501 -
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 1 37 - -
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 1727 1756 - -
Lsi01g00290 1782 SUPERFAMILY Homeodomain-like 21 87 IPR009057 -
Lsi01g00290 1782 SMART testlast3 574 633 IPR018501 -
Lsi01g00290 1782 SMART HOX_1 29 91 IPR001356 GO:0003677
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 7 31 - -
Lsi01g00290 1782 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1136 1206 IPR028941 -
Lsi01g00290 1782 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 222 1782 IPR044977 GO:0006357
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 231 251 - -
Lsi01g00290 1782 Coils Coil 1662 1682 - -
Lsi01g00290 1782 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 4 203 IPR044977 GO:0006357
Lsi01g00290 1782 ProSiteProfiles HARE-type HTH domain profile. 756 825 IPR007759 GO:0006355
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 1577 1601 - -
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 1539 1560 - -
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 1670 1782 - -
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 1561 1576 - -
Lsi01g00290 1782 ProSiteProfiles 'Homeobox' domain profile. 27 87 IPR001356 GO:0003677
Lsi01g00290 1782 Pfam HB1, ASXL, restriction endonuclease HTH domain 756 824 IPR007759 GO:0006355
Lsi01g00290 1782 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 964 1004 IPR028942 -
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 87 143 - -
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 1229 1248 - -
Lsi01g00290 1782 CDD homeodomain 32 87 IPR001356 GO:0003677
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 1057 1089 - -
Lsi01g00290 1782 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT1 222 1782 - -
Lsi01g00290 1782 Pfam Homeodomain 30 86 IPR001356 GO:0003677
Lsi01g00290 1782 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT1 4 203 - -
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 1670 1690 - -
Lsi01g00290 1782 Pfam DDT domain 575 630 IPR018501 -
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 234 251 - -
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 1068 1089 - -
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 1759 1782 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00290 Lsi-Chr1:2567422 Lsi02g01928 Lsi-Chr2:25206052 2.13E-27 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24565 PF15613 WSD 5.40E-13 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00290 - - cmo:103484497 3013.02