Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00290 ATGGAAGCTGCTGCCTCCGACGGCGAAAATCACAACCAGAATAATGATAATATTAACAAAATTAGTAACTCAAGTGAGGGTCTTAGCAAGCCCAAGCGCCAGATGAAGACTCCGTTTCAGCTTGAAACCCTCGAGAAAGCCTATGCTTTGGAGACTTACCCATCGGAGTCGACAAGGGCTGAACTGTCGGAGAAATTGGGGCTCACCGATCGGCAATTGCAGATGTGGTTTTGTCATAGGAGGTTGAAGGACAAGAAGGAACCGGTGAAGAAACCCCGGAAGGTGGCACCCGCACCCCCCTTGCCGTTGCCTGATTCTCCCATTGACGAATTGAGAGTAGTGGCCGAGCCGGGTAGTGATTACGCTTCAGGGTCGGGCTCGGGTTCAAGTCCATTTGGTGATGTTGGGTTGCGTAATGTGGCACCTAGAAGTGTTGGAGATGATATGCCAATGATGAGAAGGTATTATGAACCTTCACGGTCTGTTATGGAACTTAGAGCTATTGCTTGTGTGGAGTCGCAGTTGGGAGAGCCATTGAGGGAGGACGGACCTATTCTAGGGATTGAATTTGATCCACTACCACCTGATGCTTTCGGAGCACCTATAGTATGCTCAGTTGCTCTTGCATTAGACGTACCCCTTCTTATGTTGTGTGATGTATCAACAGGGACGAGCATAAGAGTGGCAGAACAGCAGAAGCGATCTGGACACTCGTATGGGGATAAATATGAACAACGGGATGCAAAATCAAATAAAGTGACTGCAAGGGGATTCCCCGAATATCCATTTATGCCAGACCAGTCTAATATTAGAGCTGATGCGTATGGTCCAGTTTCCCAATCACATTATCCAGATTCATTAGGCGAGGTTTCAGCAGCCAGGACACCATCATTTTTGCTTGGTCATGAACAGTTGAACAGGAACCATAATTACCACAGTCAGGTCTCAAGGGTTCGTCTTCTGTCTCAACAGGAGAAGCAGGGAGTTGCAATTCCATCTCCTGCTGAAGACAATGCATTTGGCCCTCCAAGGGATTCTTTTGCAAGCATCAGAATGAATTCTCAGTTTACTGAACACCCAATTGTTGGACAAGAAAATTCGTATGTGTTGCCTGATGGGCATGTTTTTCCAAACGATGTCATGATTAGGATGGAAAGGAAACGCAAGAGTGAAGAAGCTCGTCTGAGTAAAGAAGCTGAAGCCCATGAAATTAGAATGCGGAAAGAGCTTGAGAAACAAGATATTTTGAGGAAAAAGAATGAAGAACGTATAAGGAAAGAAATGGAAAAGCAAGATCGGGAAAGAAGGAGAGAAGAGGAGAGGTTACTGCGAGAAAAGCAGCGTGAAGCTGAGAGATTGAAGCGTGAGGAAAGACGTGAACATGAACGGAGGGAAAAGTTTCTGCAGAGGGAGTATATGAGGGCTGAGAAGAGGAAACAAAAAGAAGCTATTCGCAAAGAGAAGGAAGCTGTGAGACGCAAAGCTGCTATTGAGAAGGCTACTGCTCGTAGAATTGCCCGTGAGTCCATGGAGCTTATTGAGGATGAACAGCTTGAACTGATGGAACTGGCCGCTGCAAACAAAGGATTATCCTCCATATTAAGTCTTGATCATGACACTTTGCAGAATCTTGAATCTTTCCGAGATTATCTAGGTGCATTTCCACCCAAGTCTGTGCAATTGAAAAAACCTTTCGGCATTCAGCCTTGGATCAATTCAGAGGAGAACATTGGTAACCTTCTCATGGTCTGGAGATTTTTTATTACATTTTCTGATGTTCTAGAGCTGTGGCCCTTTACTCTTGATGAGTTTGTTCAAGCTCTTCATGATTATGATTCAAGATTACTGGGTGAGATTCACATTTGCCTTCTGAGATTGATTGTAAAAGACATTGAAGATGTTGCAAGAACACCTTCTGCTGGAATGGGAATGAACCAGAATGGTGTTGCCAACTCTGGAGGTGGACATCCACAGATTGTTGAAGGGGCATATGCATGGGGGTTTGACATTTGCAACTGGCAGAAGCATTTAAACCCGTTAACGTGGCCTGAAATATTTCGACAATTAGCACTATCAGCTGGATTTGGACCCCAGTTGAGAAAGAGGAGTTTGGCAATGTCTGAAATGCGTAGCAATGATGAGGCTAAATGTGGGGAGGACGTAGTTTCTACTCTACGCAATGGTTCAGCAGCTGAAAATGCATTTGCTATCATGCAAGAGAAAGGTTTGTTAGCTCCTCGGAGATCTAGGCATCGACTAACTCCTGGAACTGTCAAATTTGCTGCTTTTCATGTCCTTTCCCTAGAAGGCAGCGAAGGGTTAACAGTACTTGAACTAGCAGAGAAGATACAGAGATCTGGACTTAGAGATCTGTCTACAAGCAAGACACCAGAGGCTTCTATTTCTGTTGCTTTGACAAGGGATACTAAGCTTTTTGAAAGAATAGCTCCTTCCACATATCGCGTACGAGCGCCCTATAGGAAGAATCCAGATGATGCCGAGGACATACTTTCAGTAGCCAGAAAGAAAATTCAGGTATTCCAGAATGGGTTTTTGGCTGGAGAAGATGCTGATGACGTTGAAAGAGACGAAGAATCTGAATGTGATGATGTTGATGAAGATCCTGAAGTTGATGATATAGCAACGACTTCCTTGGTGAATGAAGATGTTAGCAAAGGAGATGCTAACTTAGGAGTTGAGAATGAGAAATTATGTCATGACATTGCTGGAAATCCACAAAATGAAATTGTCAAAGATATATCGCCGTTCCCCCTAGGTGGCTCGAAGGACACAAAATATTTAAGCCTACCTACAGAGCAGTATGCTGCTGTTGATGAGACTAATATTAGTGATCTTGATCAAGAAAATATGGAGATTGATGAAAGCAAGGAAGGTGAATCATGGATTCAAGGACTTACAGAAGGTGAATATCATGATCTTAGTGTTGAGGAGCGCTTGAATGCCCTTATTGTCTTGACCAGCATTGCAAATGAAGGAAACTCTATTCGCCTTGTTCTTGAGGATCGCTTGGAAGCTGCAAATGCTGTTAAGAAGCAAATGTTGACAGAGGCTCAGATTGATAAATCTCGGCTAAAAGAAGAGATCATTACTAAATCTGATTTTCCAATTCATATAGTGGGCAAGGTGGAAACTGAACTCAATGGTTCCACCATGGACGGTGGGCTAAGCCCTTTTCCTGTTGCCGACAATAAGAACAATGAAACAACCCCAAGCACTGCAGAAAACCCCCTCAGTAGTGTGCCGAATGAGAGGGGTACTTTGGTGCCAGATCTTTTCCCAGGCCCAGATAACTTCTTGGCTCAGCAATGTGGTCATGCTTCAAAGAGGTCACGTTCACAGTTAAAATCTTATATTGCCCATAGAGCTGAAGAAATGTACACATACAGGTCTTTGCCTCTTGGTCGAGATCGTAGGCGTAATCGGTACTGGCAATTTGTTGCTTCTTCTTCAAGCAATGATCCTGGTTCTGGGAGAATCTTTGTTGAAATGTATGATGGAAAGTGGAGGCTTATTGATTCTGAAGAGGGTTTTGAAGCTCTTTCATTGGCTTTGGACACACGGGGGATTAGAGAATCACACCTACGTATAATGTTGCAAATGATAGAGACATCATTTAAGGAAAATGTTCGGAGGAATCTGCAGTGTGCCAATGAGATGGTTCGAAGTGGAATTAATCCGAAAAATGAAAATGATGATTCGAGTTCTAGTCCTGATTGCAACACTGGTTTTAACAGTCCTAGCAGTACTGTTTGCGGGTTAAATTTGGATACAATGGTAACATCATCTTCATTCAGAATTGAGCTTGGGAGAAATGAAAACGAAAAGAAGGCTGCATTTAGAAGGTATCAAGACTTGCAGAGGTGGATGTTAAGAGAGTGCTTTAGCACATCAACGCTATGTGCCATGAAATTTGGAGAAAAAAGGTGCACTTCACTGTTGGACATTTGTGATTCTTGTCTGTGCTTGTTTGATTCTCAACATTCTCACTGTCCTTTTTGCCATCAAACTTTTGGCATTAGTGGGAATGATATTAGTTTTCTGGAACACAAATGTCACTGTGAGAGGGAAAGGAAGTCTAACCCTTTGGATACACACGTTTTAGATGCATCTCTTCCCCTCAAAAGTAGGTTGCTCAAGGCTCTCCTAGCTTTCATCGAGGTACAGGTTCCGTCAGAAGCTTTTCAATCGTTTTGGACAGAGCATAGGAAAGATTGGGGTGTCAGGATGAAATTATCATCATCTATTGAGGAGCTTCTACAGATTTTGACCCTGTTCGAAAGTGTAATTAAGCGGGACTTTCTAAAATCAGACTTTACGACAACTGATGAGCACCTGAGCTCATGTTCCATCTCTGGGAATATTATACATGACCCAGCAGATATTGGGTCTGTTCTTACATTACCATGGATTCCACGAACTAGCGCGGCTGTTGCTTTAAGGCTTTGTGAGGTAGATGCATCAATTTATTATATTGGTTGTGAGAAACCAGAGCCTGACCAGGATAAGGAAGTCGGAGAACATATCAACTTTTCCAGTAGATATGTCCAGGTTAAGAATGATGAACGGAATGAACTAAATGAGTATTATGATGATCTGATGAAGAATGAAAACTCAGCTGATCCAAAAAGTTTAAGGAACAGCTATAAACGCGGTCGAGGGAGTCGAGATTATGGACGTCGTAGAAAGTGGCAGAAAAAAGTTAATGGATCTAGATCTGGCCGGGTCCGGCAAAATGTTAAGAGTAACGAAAAGATGAATCAAGGACAGAGGGAGCTAGGACAAGGAACACAGGTTATGGGCGTACGGGGCCGCCGTACAGTAAGGAAGAGAAGGGCTGAGAAGAGCATTCCAGATGAAGGACTTTTGGGGCTGGTGCCTAGTAGTAGTACTCAGAATATGGATGAATCCCCAAAAGATTATCTTGGGGAATGGGAGGATGAAAAAATGGATAGGTTTGTCGATATGGAAGATGAAGAGAACGTGATGGATGATGAAGAGAATGTGATGGAAGATGAGGAGAATGAAGAGAATGTAAATAACGTAGAAGCGATGGACTCCGACGATGATGGCCAGGGAGTTGGGTATGAGCAAGGGGGCTGGGAGTTTGGGTTTGAAGGCACTTCCAACAGATGGAATGGTGATTTAGGGATAGGTAGTGATGAGGATGTGGATTTATCCGAGGACTACAATGGCACTGAAGAGGGGGGAAATGATGATATGGAGGAGTTAGATGTTGATAGCAGCGAGGAGTCGGATTGTTCACCAAATAGGATAGGCAACAACAATGGTGGAGGAGAATCCGCTGTTTCAGACGACTATAGTGATTAA 5349 43.48 MEAAASDGENHNQNNDNINKISNSSEGLSKPKRQMKTPFQLETLEKAYALETYPSESTRAELSEKLGLTDRQLQMWFCHRRLKDKKEPVKKPRKVAPAPPLPLPDSPIDELRVVAEPGSDYASGSGSGSSPFGDVGLRNVAPRSVGDDMPMMRRYYEPSRSVMELRAIACVESQLGEPLREDGPILGIEFDPLPPDAFGAPIVCSVALALDVPLLMLCDVSTGTSIRVAEQQKRSGHSYGDKYEQRDAKSNKVTARGFPEYPFMPDQSNIRADAYGPVSQSHYPDSLGEVSAARTPSFLLGHEQLNRNHNYHSQVSRVRLLSQQEKQGVAIPSPAEDNAFGPPRDSFASIRMNSQFTEHPIVGQENSYVLPDGHVFPNDVMIRMERKRKSEEARLSKEAEAHEIRMRKELEKQDILRKKNEERIRKEMEKQDRERRREEERLLREKQREAERLKREERREHERREKFLQREYMRAEKRKQKEAIRKEKEAVRRKAAIEKATARRIARESMELIEDEQLELMELAAANKGLSSILSLDHDTLQNLESFRDYLGAFPPKSVQLKKPFGIQPWINSEENIGNLLMVWRFFITFSDVLELWPFTLDEFVQALHDYDSRLLGEIHICLLRLIVKDIEDVARTPSAGMGMNQNGVANSGGGHPQIVEGAYAWGFDICNWQKHLNPLTWPEIFRQLALSAGFGPQLRKRSLAMSEMRSNDEAKCGEDVVSTLRNGSAAENAFAIMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSEGLTVLELAEKIQRSGLRDLSTSKTPEASISVALTRDTKLFERIAPSTYRVRAPYRKNPDDAEDILSVARKKIQVFQNGFLAGEDADDVERDEESECDDVDEDPEVDDIATTSLVNEDVSKGDANLGVENEKLCHDIAGNPQNEIVKDISPFPLGGSKDTKYLSLPTEQYAAVDETNISDLDQENMEIDESKEGESWIQGLTEGEYHDLSVEERLNALIVLTSIANEGNSIRLVLEDRLEAANAVKKQMLTEAQIDKSRLKEEIITKSDFPIHIVGKVETELNGSTMDGGLSPFPVADNKNNETTPSTAENPLSSVPNERGTLVPDLFPGPDNFLAQQCGHASKRSRSQLKSYIAHRAEEMYTYRSLPLGRDRRRNRYWQFVASSSSNDPGSGRIFVEMYDGKWRLIDSEEGFEALSLALDTRGIRESHLRIMLQMIETSFKENVRRNLQCANEMVRSGINPKNENDDSSSSPDCNTGFNSPSSTVCGLNLDTMVTSSSFRIELGRNENEKKAAFRRYQDLQRWMLRECFSTSTLCAMKFGEKRCTSLLDICDSCLCLFDSQHSHCPFCHQTFGISGNDISFLEHKCHCERERKSNPLDTHVLDASLPLKSRLLKALLAFIEVQVPSEAFQSFWTEHRKDWGVRMKLSSSIEELLQILTLFESVIKRDFLKSDFTTTDEHLSSCSISGNIIHDPADIGSVLTLPWIPRTSAAVALRLCEVDASIYYIGCEKPEPDQDKEVGEHINFSSRYVQVKNDERNELNEYYDDLMKNENSADPKSLRNSYKRGRGSRDYGRRRKWQKKVNGSRSGRVRQNVKSNEKMNQGQRELGQGTQVMGVRGRRTVRKRRAEKSIPDEGLLGLVPSSSTQNMDESPKDYLGEWEDEKMDRFVDMEDEENVMDDEENVMEDEENEENVNNVEAMDSDDDGQGVGYEQGGWEFGFEGTSNRWNGDLGIGSDEDVDLSEDYNGTEEGGNDDMEELDVDSSEESDCSPNRIGNNNGGGESAVSDDYSD 1782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2567422 2580038 + Lsi01G002900.1 Lsi01g00290 652948

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 1539 1621 - -
Lsi01g00290 1782 Coils Coil 421 494 - -
Lsi01g00290 1782 Gene3D - 29 87 - -
Lsi01g00290 1782 ProSiteProfiles DDT domain profile. 574 633 IPR018501 -
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 1 37 - -
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 1727 1756 - -
Lsi01g00290 1782 SUPERFAMILY Homeodomain-like 21 87 IPR009057 -
Lsi01g00290 1782 SMART testlast3 574 633 IPR018501 -
Lsi01g00290 1782 SMART HOX_1 29 91 IPR001356 GO:0003677
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 7 31 - -
Lsi01g00290 1782 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1136 1206 IPR028941 -
Lsi01g00290 1782 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 222 1782 IPR044977 GO:0006357
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 231 251 - -
Lsi01g00290 1782 Coils Coil 1662 1682 - -
Lsi01g00290 1782 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 4 203 IPR044977 GO:0006357
Lsi01g00290 1782 ProSiteProfiles HARE-type HTH domain profile. 756 825 IPR007759 GO:0006355
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 1577 1601 - -
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 1539 1560 - -
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 1670 1782 - -
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 1561 1576 - -
Lsi01g00290 1782 ProSiteProfiles 'Homeobox' domain profile. 27 87 IPR001356 GO:0003677
Lsi01g00290 1782 Pfam HB1, ASXL, restriction endonuclease HTH domain 756 824 IPR007759 GO:0006355
Lsi01g00290 1782 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 964 1004 IPR028942 -
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 87 143 - -
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 1229 1248 - -
Lsi01g00290 1782 CDD homeodomain 32 87 IPR001356 GO:0003677
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 1057 1089 - -
Lsi01g00290 1782 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT1 222 1782 - -
Lsi01g00290 1782 Pfam Homeodomain 30 86 IPR001356 GO:0003677
Lsi01g00290 1782 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT1 4 203 - -
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 1670 1690 - -
Lsi01g00290 1782 Pfam DDT domain 575 630 IPR018501 -
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 234 251 - -
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 1068 1089 - -
Lsi01g00290 1782 MobiDBLite consensus disorder prediction 1759 1782 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00290 - - - cmo:103484497 3013.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00290 Lsi-Chr1:2567422 Lsi02g01928 Lsi-Chr2:25206052 2.13E-27 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g141 . . Bda02g00512 . . Bpe01g00444 Bma14g01157 . . . . Cma07g00219 . Car07g00186 Sed14g1489 . Cpe10g00176 Bhi03g00366 Tan03g2513 Cmetu04g2550 . Hepe04g1876 . . Cla01g02274 . Cec04g2032 . Clacu01g2408 Cmu01g2271 Cre04g1939 Cone1ag0181 Cone5ag1688 . . Lsi01g00290 Csa06g03655 . Cme08g00273 . Blo14g00408 . . . . . . . Cmo03g01285 Cmo07g00220 . . . . . . . . . . . . . . . . . . . . . . Chy02g00274 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi09g01939 CCT,ECH 59 601 Homeobox Transcription Factor Family AT4G00730 63.0 2.8e-173 605.5
Lsi05g01248 . 43 527 Homeobox Transcription Factor Family AT4G00730 55.9 3.8e-138 488.8
Lsi05g02010 CCT,ECH 15 488 Homeobox Transcription Factor Family AT4G00730 55.5 1.3e-135 480.3
Lsi03g01401 . 1 280 Homeobox Transcription Factor Family AT3G01470 55.5 6.0e-57 218.0
Lsi02g01555 . 1 276 Homeobox Transcription Factor Family AT3G01470 52.0 3.4e-52 202.2
Lsi07g00510 . 69 763 Homeobox Transcription Factor Family AT1G79840 58.1 1.6e-215 746.1
Lsi04g00442 . 4 304 Homeobox Transcription Factor Family AT1G69780 64.1 1.7e-81 299.7
Lsi01g00085 . 4 847 Homeobox Transcription Factor Family AT2G34710 79.3 0.0e+00 1358.6
Lsi02g00942 . 4 850 Homeobox Transcription Factor Family AT2G34710 76.4 0.0e+00 1290.4
Lsi02g02997 . 3 995 Homeobox Transcription Factor Family AT2G34710 55.9 1.1e-301 1032.7
Lsi10g01265 . 23 773 Homeobox Transcription Factor Family AT2G34710 63.9 5.4e-298 1020.4
Lsi04g02325 . 1 911 Homeobox Transcription Factor Family AT2G34710 55.0 9.0e-277 949.9
Lsi03g00048 . 8 770 Homeobox Transcription Factor Family AT2G34710 60.5 1.2e-252 869.8
Lsi02g02997 . 1 947 Homeobox Transcription Factor Family AT1G52150 71.5 0.0e+00 1276.9
Lsi04g02325 . 7 863 Homeobox Transcription Factor Family AT1G52150 65.0 0.0e+00 1088.9
Lsi01g00085 . 7 804 Homeobox Transcription Factor Family AT1G52150 66.5 1.8e-303 1038.5
Lsi02g00942 . 14 802 Homeobox Transcription Factor Family AT1G52150 63.6 1.0e-282 969.5
Lsi10g01265 . 23 724 Homeobox Transcription Factor Family AT1G52150 62.1 2.0e-262 902.1
Lsi03g00048 . 18 772 Homeobox Transcription Factor Family AT1G52150 57.7 1.4e-234 809.7
Lsi07g01279 . 1 277 Homeobox Transcription Factor Family AT4G16780 62.1 1.9e-82 302.8
Lsi05g02181 . 48 329 Homeobox Transcription Factor Family AT4G16780 56.3 6.0e-68 254.6
Lsi01g00857 . 59 227 Homeobox Transcription Factor Family AT4G16780 63.2 4.3e-50 195.3
Lsi02g02612 . 157 280 Homeobox Transcription Factor Family AT4G16780 76.8 5.8e-47 184.9
Lsi05g00810 . 51 244 Homeobox Transcription Factor Family AT4G16780 57.9 5.8e-47 184.9
Lsi03g01746 . 216 337 Homeobox Transcription Factor Family AT4G16780 77.2 3.2e-45 179.1
Lsi06g01229 . 139 255 Homeobox Transcription Factor Family AT4G16780 69.2 2.4e-40 162.9
Lsi04g01446 . 118 237 Homeobox Transcription Factor Family AT4G16780 69.7 5.9e-39 158.3
Lsi05g02181 . 87 334 Homeobox Transcription Factor Family AT2G44910 63.0 9.7e-67 250.8
Lsi07g01279 . 25 249 Homeobox Transcription Factor Family AT2G44910 62.3 1.3e-66 250.4
Lsi02g02612 . 165 291 Homeobox Transcription Factor Family AT2G44910 78.1 2.7e-48 189.5
Lsi03g01746 . 122 335 Homeobox Transcription Factor Family AT2G44910 58.6 5.9e-48 188.3
Lsi01g00857 . 70 234 Homeobox Transcription Factor Family AT2G44910 60.8 1.7e-47 186.8
Lsi05g00810 . 126 244 Homeobox Transcription Factor Family AT2G44910 73.3 2.0e-43 173.3
Lsi06g01229 . 139 263 Homeobox Transcription Factor Family AT2G44910 66.4 9.2e-41 164.5
Lsi04g01446 . 121 237 Homeobox Transcription Factor Family AT2G44910 67.5 2.8e-37 152.9
Lsi02g02997 . 9 995 Homeobox Transcription Factor Family AT4G32880 66.0 0.0e+00 1241.9
Lsi04g02325 . 18 911 Homeobox Transcription Factor Family AT4G32880 67.4 0.0e+00 1204.9
Lsi01g00085 . 14 847 Homeobox Transcription Factor Family AT4G32880 66.1 0.0e+00 1088.9
Lsi02g00942 . 14 850 Homeobox Transcription Factor Family AT4G32880 62.6 7.9e-302 1033.1
Lsi10g01265 . 14 773 Homeobox Transcription Factor Family AT4G32880 59.7 1.2e-273 939.5
Lsi03g00048 . 12 772 Homeobox Transcription Factor Family AT4G32880 57.6 1.6e-238 822.8
Lsi01g00085 . 7 847 Homeobox Transcription Factor Family AT1G30490 78.6 0.0e+00 1322.0
Lsi02g00942 . 7 850 Homeobox Transcription Factor Family AT1G30490 74.8 0.0e+00 1237.6
Lsi02g02997 . 2 995 Homeobox Transcription Factor Family AT1G30490 54.2 8.0e-286 979.9
Lsi10g01265 . 5 773 Homeobox Transcription Factor Family AT1G30490 61.1 3.4e-284 974.5
Lsi04g02325 . 2 911 Homeobox Transcription Factor Family AT1G30490 52.9 9.8e-260 893.3
Lsi03g00048 . 5 770 Homeobox Transcription Factor Family AT1G30490 59.4 7.3e-247 850.5
Lsi10g00143 . 53 772 Homeobox Transcription Factor Family AT4G21750 63.1 4.7e-253 870.9
Lsi02g00624 CCT 7 662 Homeobox Transcription Factor Family AT4G21750 58.0 3.8e-218 755.0
Lsi01g00412 CCT 20 544 Homeobox Transcription Factor Family AT4G21750 70.2 6.9e-212 734.2
Lsi11g01463 . 88 623 Homeobox Transcription Factor Family AT4G21750 65.8 1.5e-211 733.0
Lsi09g01939 CCT,ECH 93 853 Homeobox Transcription Factor Family AT4G21750 53.2 5.5e-209 724.5
Lsi05g01248 . 50 780 Homeobox Transcription Factor Family AT4G21750 50.1 1.3e-189 660.2
Lsi07g00984 . 1 139 Homeobox Transcription Factor Family AT4G21750 63.7 7.3e-44 176.0
Lsi03g01817 . 253 453 Homeobox Transcription Factor Family AT5G41410 55.6 3.1e-61 233.4
Lsi10g00586 . 259 472 Homeobox Transcription Factor Family AT5G41410 54.5 9.0e-37 152.1
Lsi03g00020 . 520 695 Homeobox Transcription Factor Family AT1G75410 51.1 4.0e-41 166.0
Lsi01g01043 . 298 721 Homeobox Transcription Factor Family AT2G23760 58.0 2.7e-98 356.7
Lsi10g00586 . 251 476 Homeobox Transcription Factor Family AT2G23760 68.2 7.1e-75 278.9
Lsi07g01279 . 1 277 Homeobox Transcription Factor Family AT4G17460 56.8 2.5e-74 275.8
Lsi05g02181 . 43 313 Homeobox Transcription Factor Family AT4G17460 55.9 3.4e-63 238.8
Lsi01g00857 . 1 229 Homeobox Transcription Factor Family AT4G17460 52.8 2.4e-45 179.5
Lsi02g02612 . 150 295 Homeobox Transcription Factor Family AT4G17460 69.5 5.4e-45 178.3
Lsi03g01746 . 216 327 Homeobox Transcription Factor Family AT4G17460 78.8 4.8e-41 165.2
Lsi07g01279 . 1 277 Homeobox Transcription Factor Family AT5G47370 58.8 3.9e-75 278.5
Lsi05g02181 . 43 329 Homeobox Transcription Factor Family AT5G47370 55.3 7.6e-63 237.7
Lsi02g02612 . 72 286 Homeobox Transcription Factor Family AT5G47370 53.5 1.1e-48 190.7
Lsi01g00857 . 1 229 Homeobox Transcription Factor Family AT5G47370 50.2 1.4e-45 180.3
Lsi03g01746 . 216 326 Homeobox Transcription Factor Family AT5G47370 82.1 5.1e-43 171.8
Lsi05g00810 . 109 277 Homeobox Transcription Factor Family AT5G47370 60.1 1.5e-42 170.2
Lsi06g01229 . 139 254 Homeobox Transcription Factor Family AT5G47370 68.1 1.6e-36 150.2
Lsi01g00857 . 1 263 Homeobox Transcription Factor Family AT4G37790 64.0 1.0e-83 307.0
Lsi05g00810 . 1 277 Homeobox Transcription Factor Family AT4G37790 59.4 9.4e-74 273.9
Lsi04g01446 . 1 280 Homeobox Transcription Factor Family AT4G37790 51.9 1.4e-56 216.9
Lsi03g01746 . 184 349 Homeobox Transcription Factor Family AT4G37790 64.3 5.0e-51 198.4
Lsi07g01279 . 4 228 Homeobox Transcription Factor Family AT4G37790 50.8 8.5e-51 197.6
Lsi02g02612 . 152 311 Homeobox Transcription Factor Family AT4G37790 63.2 1.6e-49 193.4
Lsi05g02181 . 182 296 Homeobox Transcription Factor Family AT4G37790 78.3 1.4e-45 180.3
Lsi06g01229 . 139 254 Homeobox Transcription Factor Family AT4G37790 72.4 1.6e-41 166.8
Lsi05g02181 . 43 340 Homeobox Transcription Factor Family AT3G60390 57.8 5.6e-75 278.1
Lsi07g01279 . 2 268 Homeobox Transcription Factor Family AT3G60390 55.4 1.9e-70 263.1
Lsi02g02612 . 144 289 Homeobox Transcription Factor Family AT3G60390 70.4 2.4e-49 193.0
Lsi01g00857 . 70 227 Homeobox Transcription Factor Family AT3G60390 63.1 4.5e-48 188.7
Lsi05g00810 . 96 244 Homeobox Transcription Factor Family AT3G60390 65.8 4.2e-46 182.2
Lsi03g01746 . 216 338 Homeobox Transcription Factor Family AT3G60390 75.8 5.5e-46 181.8
Lsi06g01229 . 139 257 Homeobox Transcription Factor Family AT3G60390 68.9 5.3e-41 165.2
Lsi04g01446 . 116 237 Homeobox Transcription Factor Family AT3G60390 64.8 4.2e-38 155.6
Lsi01g00857 . 1 263 Homeobox Transcription Factor Family AT2G22800 60.8 7.6e-76 280.8
Lsi05g00810 . 1 277 Homeobox Transcription Factor Family AT2G22800 56.5 2.8e-70 262.3
Lsi04g01446 . 1 280 Homeobox Transcription Factor Family AT2G22800 52.0 4.9e-59 224.9
Lsi02g02612 . 149 311 Homeobox Transcription Factor Family AT2G22800 59.9 2.7e-49 192.6
Lsi07g01279 . 4 228 Homeobox Transcription Factor Family AT2G22800 52.8 6.0e-49 191.4
Lsi03g01746 . 216 326 Homeobox Transcription Factor Family AT2G22800 79.3 1.6e-46 183.3
Lsi05g02181 . 182 296 Homeobox Transcription Factor Family AT2G22800 74.8 7.6e-44 174.5
Lsi06g01229 . 136 254 Homeobox Transcription Factor Family AT2G22800 69.7 5.7e-39 158.3
Lsi09g01939 CCT,ECH 1 854 Homeobox Transcription Factor Family AT3G61150 62.0 1.3e-272 936.0
Lsi05g01248 . 55 781 Homeobox Transcription Factor Family AT3G61150 58.5 1.3e-232 803.1
Lsi05g02010 CCT,ECH 38 732 Homeobox Transcription Factor Family AT3G61150 59.5 9.2e-231 797.0
Lsi01g00412 CCT 64 544 Homeobox Transcription Factor Family AT3G61150 52.3 7.8e-137 485.0
Lsi04g01445 CCT 45 354 Homeobox Transcription Factor Family AT4G08150 65.4 4.7e-111 398.3
Lsi08g01559 CCT 112 396 Homeobox Transcription Factor Family AT4G08150 65.4 8.3e-100 360.9
Lsi01g00456 . 97 347 Homeobox Transcription Factor Family AT4G08150 57.4 2.2e-76 283.1
Lsi11g01422 CCT,ECH 90 321 Homeobox Transcription Factor Family AT4G08150 59.2 1.6e-71 266.9
Lsi04g02098 . 126 493 Homeobox Transcription Factor Family AT5G25220 71.2 7.1e-134 474.2
Lsi08g01229 . 175 416 Homeobox Transcription Factor Family AT5G25220 72.0 9.4e-110 394.0
Lsi04g02098 . 167 492 Homeobox Transcription Factor Family AT5G11060 73.1 1.6e-127 453.0
Lsi08g01229 . 163 415 Homeobox Transcription Factor Family AT5G11060 69.2 8.5e-105 377.5
Lsi04g02098 . 77 478 Homeobox Transcription Factor Family AT4G32040 53.7 3.0e-107 385.6
Lsi04g00565 . 1 430 Homeobox Transcription Factor Family AT1G23380 52.2 2.6e-107 385.6
Lsi11g00638 . 59 297 Homeobox Transcription Factor Family AT1G23380 53.1 3.1e-68 255.8
Lsi04g01445 CCT 104 329 Homeobox Transcription Factor Family AT1G23380 50.8 9.1e-60 227.6
Lsi08g01663 . 11 185 Homeobox Transcription Factor Family AT1G23380 56.3 5.2e-47 185.3
Lsi04g02098 . 176 492 Homeobox Transcription Factor Family AT1G62990 57.6 1.6e-92 336.3
Lsi08g01229 . 175 415 Homeobox Transcription Factor Family AT1G62990 55.5 1.6e-76 283.1
Lsi09g00319 . 1 148 Homeobox Transcription Factor Family AT1G62990 69.6 9.2e-48 187.6
Lsi04g00442 . 4 304 Homeobox Transcription Factor Family AT1G26960 54.7 6.8e-63 237.7
Lsi02g01495 . 1 293 Homeobox Transcription Factor Family AT3G01220 52.3 6.7e-51 198.0
Lsi02g00024 . 1 795 Homeobox Transcription Factor Family AT1G17920 53.2 3.2e-208 721.8
Lsi02g00024 . 20 794 Homeobox Transcription Factor Family AT1G73360 56.4 6.8e-225 777.3
Lsi05g00276 . 792 1470 Homeobox Transcription Factor Family AT1G73360 51.6 2.9e-191 665.6
Lsi10g00143 . 77 772 Homeobox Transcription Factor Family AT1G05230 72.8 1.4e-275 945.7
Lsi11g01463 . 49 622 Homeobox Transcription Factor Family AT1G05230 60.9 2.7e-226 781.9
Lsi09g01939 CCT,ECH 111 854 Homeobox Transcription Factor Family AT1G05230 54.4 4.4e-208 721.5
Lsi01g00412 CCT 20 547 Homeobox Transcription Factor Family AT1G05230 65.7 8.0e-194 674.1
Lsi02g00624 CCT 59 662 Homeobox Transcription Factor Family AT1G05230 54.6 8.9e-193 670.6
Lsi05g02010 CCT,ECH 104 733 Homeobox Transcription Factor Family AT1G05230 51.7 1.5e-171 600.1
Lsi07g00984 . 1 139 Homeobox Transcription Factor Family AT1G05230 80.4 4.8e-53 206.5
Lsi01g00699 . 9 216 Homeobox Transcription Factor Family AT2G18550 50.5 4.0e-43 171.8
Lsi10g00143 . 93 772 Homeobox Transcription Factor Family AT2G32370 51.8 2.2e-183 639.4
Lsi05g01248 . 33 782 Homeobox Transcription Factor Family AT5G52170 51.5 6.0e-199 691.0
Lsi09g01939 CCT,ECH 105 851 Homeobox Transcription Factor Family AT5G52170 50.6 4.0e-195 678.3
Lsi05g02010 CCT,ECH 104 731 Homeobox Transcription Factor Family AT5G52170 51.2 1.6e-175 613.2
Lsi01g00699 . 61 214 Homeobox Transcription Factor Family AT5G66700 55.8 4.0e-38 155.2
Lsi01g00290 . 10 1510 Homeobox Transcription Factor Family AT1G28420 51.9 0.0e+00 1147.1
Lsi03g01817 . 181 454 Homeobox Transcription Factor Family AT2G16400 57.6 1.9e-77 287.0
Lsi02g02721 . 186 478 Homeobox Transcription Factor Family AT2G16400 52.9 2.1e-73 273.5
Lsi03g02150 CCT,ECH 163 326 Homeobox Transcription Factor Family AT2G35940 53.7 3.3e-48 190.3
Lsi01g01043 . 413 574 Homeobox Transcription Factor Family AT4G34610 63.6 1.2e-53 208.0
Lsi03g00020 . 549 746 Homeobox Transcription Factor Family AT4G34610 53.0 8.4e-47 185.3
Lsi10g00143 . 53 770 Homeobox Transcription Factor Family AT4G04890 65.1 1.4e-257 885.9
Lsi02g00624 CCT 32 662 Homeobox Transcription Factor Family AT4G04890 59.0 1.1e-219 760.0
Lsi11g01463 . 88 622 Homeobox Transcription Factor Family AT4G04890 67.5 4.2e-214 741.5
Lsi01g00412 CCT 5 544 Homeobox Transcription Factor Family AT4G04890 71.5 4.2e-214 741.5
Lsi09g01939 CCT,ECH 105 853 Homeobox Transcription Factor Family AT4G04890 54.0 3.6e-213 738.4
Lsi05g01248 . 50 780 Homeobox Transcription Factor Family AT4G04890 51.3 1.8e-196 682.9
Lsi05g02010 CCT,ECH 104 732 Homeobox Transcription Factor Family AT4G04890 50.7 1.6e-176 616.7
Lsi07g00984 . 1 139 Homeobox Transcription Factor Family AT4G04890 68.4 1.2e-46 185.3
Lsi06g01202 . 140 571 Homeobox Transcription Factor Family AT4G29940 60.5 3.4e-142 502.7
Lsi10g01265 . 1 773 Homeobox Transcription Factor Family AT5G60690 75.6 0.0e+00 1238.4
Lsi01g00085 . 1 847 Homeobox Transcription Factor Family AT5G60690 69.0 0.0e+00 1137.1
Lsi02g00942 . 1 850 Homeobox Transcription Factor Family AT5G60690 64.4 3.9e-314 1073.9
Lsi03g00048 . 1 768 Homeobox Transcription Factor Family AT5G60690 72.0 3.2e-311 1064.3
Lsi02g02997 . 9 995 Homeobox Transcription Factor Family AT5G60690 55.6 9.8e-292 999.6
Lsi04g02325 . 20 911 Homeobox Transcription Factor Family AT5G60690 53.8 1.0e-264 909.8
Lsi01g00456 . 86 350 Homeobox Transcription Factor Family AT1G62360 79.9 9.4e-117 417.2
Lsi11g01422 CCT,ECH 85 336 Homeobox Transcription Factor Family AT1G62360 71.3 9.4e-101 364.0
Lsi04g01445 CCT 108 333 Homeobox Transcription Factor Family AT1G62360 55.7 2.6e-66 249.6
Lsi11g00638 . 60 299 Homeobox Transcription Factor Family AT1G62360 52.0 2.1e-60 229.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007748 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24565 PF15613 WSD 5.40E-13 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00290 Lsi_Chr01 FPKM 7.574241 8.301209 7.648585 6.858937 6.341909 6.693895 7.104581 8.864452 9.314191 9.467664