Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00302 ATGCGTCGAATATTTACGTGCTACTTACTGTTGAGCCTAAGAGCTGACTCAATTCCATCTCCCAATTCCAAATGCGAAACTCAGCTTCAACAAGGCTGCCATGACAGAGCCAAGTCCCTCAAACTCAAGCTCATCGCCATCGCTTCCATTTTAGTTGCGAGCATGATCGGCGTTTGTCTTCCCCTCTTCTCTCGCGCCGTGCCGGTGCTTCAACCAGAGGGAAAGCCCTTTGCAATCGTTAAGGCATTTGCCTCCGGTGTGATTCTAGCCACCGGATATATGCACGTTCTCCCTGATTCCTTCGATTGCTTGACATCCCCCTGTTTGCCAGAGAATCCATGGCGGAAATTCCCTTTCTCCACATTCATAGCAATGCTTTCCGCTGTTATGACTCTAATGTTGGACTCATTTTCGACGAGTCGCTACAATAAACAGTTGATGCAGGATCAAGCCGCAGACGAGGAAGAGGAGAAGAACGAGGATCGCAAGGAAATCAGTGACAATTTGGGGAAAGAAGAAGGAATCGAGAAAAAACTTGGTTCGCAATTGCTACGGCAACGTGTTATTGCGCAGGTATTAGAAGCGGGGATCGTTGTGCATTCGGTGGTGATAGGGCTTTCAATGGGGGCTTCGGATAATCCGTGCACCATAAGGCCGCTTATCGCTGCTCTGTGCTTTCATCAGCTGTTCGAAGGGATGGGGCTTGGAGGGTGCATTTTGCAAGCGGAATATAGGTTGAAGATGAAGGCGATAATGGTGTTTTTCTTCTCGGTTACGACGCCGTTTGGAATAGCATTGGGGATTGGGTTGTCGAATGTGTACAGTGAGAATAGTCCCACGGCTCTTATAGTAGTGGGGATTTTGAATGCTTTATCTGCTGGGTTGCTGAATTATATGGCATTGGTTGATTTGTTGGCGTATGATTTCATGGGGCCTAAATTGCAAGCCAATATCAAGCTGCAAATATGGGCTTATGTTGCTGTTTTCTTGGGCTGTTTTGATTCTTTTTCCCTCAAGGAAATTCCGAAGCTGATTGCTCCTACCGAAGCTGCTGTCCCAATACCGTCTTCTTCATCTTGCTTTCTCACAGCACCTTACAGTTCTGGGAGGACAACTCTTTCAGCATCTGGAATGATATTACCTGAAACCCTTTATGACACCAGGGTCGCTAAGCATCTTGGTAATTACAAGGATCAATTTGCAACGTTGGTTCTTACTGTTTCCTCCATTTTTGAGCCTTTTATACCACTTCAACACAGAGATACTATTCATAAGCCTATTTACGAGCTGCAGGGAAAGCCCGAGCTAATTCCTGGTGTTCAGATTGACATTATGGTTGAGTATGATATACCTACATCTGCCACTGCTCTTCAATCAGTCATGGATGCTTCCTTGGATTCACTACATCAGAGATGGGAGGTCGGCTGGTCTTTAGCCTCATATACAAATGGTTCTCCATCTTTTAGGGATTCTCTTCGAGGACAGATTGAAAATGACAAGAAAACTTTTGTTGGTAGCCAGAGATATTTGGATATGGAAGGATCCAACAAGAATAATGACTTAACAGTAAGAATCGCCATTCTTGGTGTTCCCTCATTCTCAAAGGACATGCCAAACATCAGTATATCTCCCTCAAGGCAGAGAGGATCCTTTCTTCTTGCTGTTGGTTCTCCTTTTGGTGTTCTATCACCGGTGCATTTCCTTAACAGCATATCGGTCGGATCAATTTCCAATTGCTACCCTCCTAGCTCATGGAACAAGTCATTGCTGATGGCTGACATGCGGTGTCTTCCTGGAATGGAAGGATGTCCAGTTTTCGATGAACAAGCACGTCTCATCGGTGTTCTGATTAGGCCACTTGTGCATTATATGACTGGTGCTGAGATTCAGCTGTTGATTCCATGGGTAGCCATCGCATCTGCTTGCAGTGGTCTACTGCTAGGAGCTTGTAATGCTGGAGAAAGGATTGGCAACGACAATGGGTGTATTAGTGTTGTGGGGAATGAGGCAATGAATAAGGAACAAAAATTTGAGGGAGCCTTCAGCAATATTCAAGAAAATTCTGGTTGTTCTCGTCCTTTCCCATGTAAAGTTGAGAAGGCAATGGCTTCTGTTTGTCTTGTTACAGTAGGTGAAGGAATTTGGGCATCTGGCGTTTTGCTCAATAGCCAAGGCCTAATACTCACGAATGCCCACTTGATAGAGCCATGGAGATTTGGGAAAACAAATGTTAGTGGAGAAAGATCAATTGAAAATGCCAAGCTGCTGCAGTCCCACACTGAGCATTCTCCATTTTCAATGCATAATGGTGTTTTTGGCGGCAAAAAGAGTGGAGATATAACACAGAATGCCTCTAAGAATGCAAATCACGACCAATTTGAGGATAATAAGTTGAATTTTGCTAACTATGGCAGTAGAAACTTGCGTGTTCGCTTGAATCATGCAGAGCCTTGGATTTGGTGTGATGCTAAAGTGTTATACATCTGCAAGGGACCTTGGGATGTTGCCCTATTGCAGCTTGAGCAAGTTCCGGAGCAGCTCTCCCCTATTATTATGGATTGTTCATGGCCATCCTTGGGATCAAAGATACATGTTATTGGACATGGACTATTGGGACCGAAATCTGGCTTCTCCCCATCTGTTTGCTCTGGTGTGGTGGCTAATGTGGTGAAAGCAAAGATTCCCTCATCTTATCACCAAGGAGGTTCATTAGCATATTTTCCTGCGATGCTTGAAACAACCGCTGCAGTGCATCCTGGTGGTAGTGGGGGTGCTGTTGTCAATTCAGAAGGCCATATGATTGGACTTGTTACAAGCAATGCGAGGCATGGGCGAGGAGCTATTATTCCACACTTGAACTTCAGCATACCTTGTGCAGCTTTGGAACCCATTCATAGGTTCTCCAAAGACATGGAGGACCTCTCAGTGGTAAAAGTTCTGGATGAACCAGATGAGCAGCTTTCTTCTATATGGGCATTGATGTCACAGCGATCTCCCAAGCCCTCTCCTCTGCCTGATGTGCCTCAATTGCCAGGTGAAGAGCATGAAACAAAAGGGAAAGGTTCTCGATTTGCGAAGTTCATCGCTGAACAGCGTGAAGTTCTCCGAAAGCCAACTCTTCACAACGAGGGGGAAAGGCTTCCATCTGATGTAATCCGTAGCAAGTTATGA 3171 45.32 MRRIFTCYLLLSLRADSIPSPNSKCETQLQQGCHDRAKSLKLKLIAIASILVASMIGVCLPLFSRAVPVLQPEGKPFAIVKAFASGVILATGYMHVLPDSFDCLTSPCLPENPWRKFPFSTFIAMLSAVMTLMLDSFSTSRYNKQLMQDQAADEEEEKNEDRKEISDNLGKEEGIEKKLGSQLLRQRVIAQVLEAGIVVHSVVIGLSMGASDNPCTIRPLIAALCFHQLFEGMGLGGCILQAEYRLKMKAIMVFFFSVTTPFGIALGIGLSNVYSENSPTALIVVGILNALSAGLLNYMALVDLLAYDFMGPKLQANIKLQIWAYVAVFLGCFDSFSLKEIPKLIAPTEAAVPIPSSSSCFLTAPYSSGRTTLSASGMILPETLYDTRVAKHLGNYKDQFATLVLTVSSIFEPFIPLQHRDTIHKPIYELQGKPELIPGVQIDIMVEYDIPTSATALQSVMDASLDSLHQRWEVGWSLASYTNGSPSFRDSLRGQIENDKKTFVGSQRYLDMEGSNKNNDLTVRIAILGVPSFSKDMPNISISPSRQRGSFLLAVGSPFGVLSPVHFLNSISVGSISNCYPPSSWNKSLLMADMRCLPGMEGCPVFDEQARLIGVLIRPLVHYMTGAEIQLLIPWVAIASACSGLLLGACNAGERIGNDNGCISVVGNEAMNKEQKFEGAFSNIQENSGCSRPFPCKVEKAMASVCLVTVGEGIWASGVLLNSQGLILTNAHLIEPWRFGKTNVSGERSIENAKLLQSHTEHSPFSMHNGVFGGKKSGDITQNASKNANHDQFEDNKLNFANYGSRNLRVRLNHAEPWIWCDAKVLYICKGPWDVALLQLEQVPEQLSPIIMDCSWPSLGSKIHVIGHGLLGPKSGFSPSVCSGVVANVVKAKIPSSYHQGGSLAYFPAMLETTAAVHPGGSGGAVVNSEGHMIGLVTSNARHGRGAIIPHLNFSIPCAALEPIHRFSKDMEDLSVVKVLDEPDEQLSSIWALMSQRSPKPSPLPDVPQLPGEEHETKGKGSRFAKFIAEQREVLRKPTLHNEGERLPSDVIRSKL 1056
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2694654 2708524 + Lsi01G003020.1 Lsi01g00302 652960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00302 1056 TIGRFAM zip: ZIP zinc/iron transport family 25 332 IPR004698 GO:0005385|GO:0016021|GO:0071577
Lsi01g00302 1056 MobiDBLite consensus disorder prediction 149 169 - -
Lsi01g00302 1056 Gene3D - 542 646 IPR043504 -
Lsi01g00302 1056 SUPERFAMILY Trypsin-like serine proteases 520 634 IPR009003 -
Lsi01g00302 1056 SUPERFAMILY Trypsin-like serine proteases 693 963 IPR009003 -
Lsi01g00302 1056 Gene3D - 856 973 IPR043504 -
Lsi01g00302 1056 Coils Coil 144 164 - -
Lsi01g00302 1056 MobiDBLite consensus disorder prediction 996 1022 - -
Lsi01g00302 1056 Gene3D - 691 855 IPR043504 -
Lsi01g00302 1056 Pfam ZIP Zinc transporter 41 332 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Lsi01g00302 1056 PANTHER SERINE PROTEASE-RELATED 356 1042 IPR039245 GO:0004252|GO:0005777|GO:0016485
Lsi01g00302 1056 Pfam Trypsin-like peptidase domain 716 936 - -
Lsi01g00302 1056 Pfam Trypsin-like peptidase domain 522 615 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00302 Lsi-Chr1:2694654 Lsi02g01027 Lsi-Chr2:10757018 7.28E-125 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00302 K23012 - csv:101204270 1214.52