Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00307 ATGGTTGGTTTAACAATAACCCACTTCCCAAACACTGATTCCTCACACAATAATCGCAATCTTTTTACCTTTTGCACTCCAGATAACAAGATTTTGAGAATGCTGCTGAAGAAGGAGCTGAAGAACAGTGATGTTGGATCGTTGGGCAGGATTGTCCTCCCCAAGAGGGAGGCAGAAGAGAACCTTCCATTTCTGACTGATAAGGAAGGTATCCAAATTGTAGTGAGAGATGTGAACTCGATCAGAAAATGGACCATGAAATACAAGTACTGGGCAAACAACAGAAGTAGAATGTATGTTCTGGAGAACACAGGGGAATTCGTTAGACAAAATGGTCTGTTGATGGGAGATTCGATGACACTATACGAGGATGACTGCAAGAACCTCTACGTGGCGGTTGAAAAAGGTGAGAATCATTCAAGAATGGAAGAAAATTACAAGCAGCAGCAGCAGCAGCAGCAGTGTAGTAATTTGTCAAACATGGAAATTAAAGACGAAGAAGAAGAAGCTTCTTTAGCTTTGTTGATAGAAGAGCTCAAACACAAAGCTGAAGACGATCCCCACGCGCCGCCCTGCTGCACCGATTATTCCTACTTCACCACTGCTACTCCGCCCAATACTATGATGGGAGGTGCTACAATTAGAGGCAGTTTTAATAACAATAATAATGCGACAAATATTAATTATAAGGAAGTAATGGAAGATTTGCAGGGGATTAATAATAATAATAATAATAATAATGGGAATGGGAATGGGTTTGAAGATTGCTTTGGAGGGCTTGATACTCTGCCTGAAGTTAGTGGATTCAAGTTCCCTCTCTTTGACTATTTTCAGCAACAATGA 843 40.81 MVGLTITHFPNTDSSHNNRNLFTFCTPDNKILRMLLKKELKNSDVGSLGRIVLPKREAEENLPFLTDKEGIQIVVRDVNSIRKWTMKYKYWANNRSRMYVLENTGEFVRQNGLLMGDSMTLYEDDCKNLYVAVEKGENHSRMEENYKQQQQQQQCSNLSNMEIKDEEEEASLALLIEELKHKAEDDPHAPPCCTDYSYFTTATPPNTMMGGATIRGSFNNNNNATNINYKEVMEDLQGINNNNNNNNGNGNGFEDCFGGLDTLPEVSGFKFPLFDYFQQQ 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2738568 2741678 + Lsi01G003070.1 Lsi01g00307 652965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00307 280 Gene3D - 25 150 IPR015300 -
Lsi01g00307 280 SMART B3_2 36 137 IPR003340 GO:0003677
Lsi01g00307 280 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 8 271 IPR044800 GO:0003700
Lsi01g00307 280 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR LEC2 ISOFORM X1 8 271 - -
Lsi01g00307 280 SUPERFAMILY DNA-binding pseudobarrel domain 35 133 IPR015300 -
Lsi01g00307 280 CDD B3_DNA 35 131 IPR003340 GO:0003677
Lsi01g00307 280 ProSiteProfiles B3 DNA-binding domain profile. 36 137 IPR003340 GO:0003677
Lsi01g00307 280 Pfam B3 DNA binding domain 38 133 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00307 Lsi-Chr1:2738568 Lsi02g02064 Lsi-Chr2:26810462 1.30E-32 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24571 PF02362 B3 1.70E-16 CL0405 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00307 - - csv:105436043 390.963