Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi01g00311 | ATGGACGAAGAGGCTAATTCTTGGCTTAGGAGAACGAAGTTTTCTCACACAGTTTATCATCGATGGGACTCATTAAGATTAAACCCAGTTCCTTTCATCGTCGAACCACCTCGCAATTCCGGCTTGAAATCGCGGCCTCAACCAGCTTCATCCACTCAGAAACCAAATCCTGATATTTCGAAGATTCAGCGAAGTTTCATATCCAGTAAACAGAGGTCTCTGTCTCCTCTTCCCCAGAGCAACTTCTCTGAAGTTTTCAAGGAAGCAAAATCCGATAGTAAGAGATTCTCAACTCCAACTCCTCGACTTAGAGAACGAACTAAGGAATTGAAGAACAAGCTATTCAACAAGGACCCTCAAGATTCAAAATCGGCCGATTCGAAGTCATCGTTGAATACCAGTCCCCTGAAACTCCTATCTTCGGGGAAAGGGGGTGATAAGTCCAAGTTCCGGAAGGACTCTTCCTGGACCAAATATTTCGATTCCGGTGGAGGAAAAGTCACCGCGGTCGAAACAGCTGATGACTGGACTGTCGATCTCTCCAAGTTGTTTGTTGGGTTAAGGTTTGCTCATGGAGCTCACAGTCGTCTTTATCATGGAAAATACAATGATGAACCTGTTGCTGTTAAAATTATTAGAGTGCCCGAGGATGACGAAAATGGAACGCTTGCTTCTCGATTGGAGAAGCAATTCACCAGAGAAGTTACCCTTTTATCTCGTCTCCATCATCCGAATGTTATAAAGTTTGTAGCTGCGTGTAGGAACCCACCTGTATACTGTGTCATTACTGAATATTTGTCTCAAGGATCATTAAGGGCATACTTACACAAACTTGAGCACCAATCCCTCCCTTTGCAAAAACTAATTCAATTTGCTTTAGATGTCGCTCGTGGCATGGAATACCTTCACTCACAAGGCGTAATTCATCGAGATCTTAAGCCTGAGAATGTTCTTATTGATGAAGACTTCCACTTGAAAATTGCAGATTTTGGTATAGCTTGTCCTGAGGCCTTTTTTGACCCATTAGCTGATGATCCTGGAACGTATCGATGGATGGCACCGGAGATGATCAAACATAAACCTTGTTGTCGAAAGGTCGATGTGTACAGCTTTGGGCTTATGTTGTGGGAAATGGTGTCAGGTGCAATTCCATACGAGGATATGACTCCCATTCAAGCAGCCTTTGCTGTTGTGAATAAGAATCTTAGGCCTGTTATCTCAAGTGATTGTCCGTTGGCAATGCGGGCTTTAATCGAGCAATGTTGGTCCCTACAACCGGACAAGAGACCCGATTTCTGGCAGGTTGTGAAGGTACTAGAGCAATTCGAATCTTCGCTTGCCCGTGATGGGACACTGAATTTATTAGGTAATCCTCTGTCTAGTTTCCAAGACCATAAGAAAGGGCTTCTCCATTGGATTCAAAAGCTTGGCCCCTTGCATCCCGAAATCGCACCCTCGCCCGTGCCGAAACCGAAATTCTCATAA | 1485 | 44.31 | MDEEANSWLRRTKFSHTVYHRWDSLRLNPVPFIVEPPRNSGLKSRPQPASSTQKPNPDISKIQRSFISSKQRSLSPLPQSNFSEVFKEAKSDSKRFSTPTPRLRERTKELKNKLFNKDPQDSKSADSKSSLNTSPLKLLSSGKGGDKSKFRKDSSWTKYFDSGGGKVTAVETADDWTVDLSKLFVGLRFAHGAHSRLYHGKYNDEPVAVKIIRVPEDDENGTLASRLEKQFTREVTLLSRLHHPNVIKFVAACRNPPVYCVITEYLSQGSLRAYLHKLEHQSLPLQKLIQFALDVARGMEYLHSQGVIHRDLKPENVLIDEDFHLKIADFGIACPEAFFDPLADDPGTYRWMAPEMIKHKPCCRKVDVYSFGLMLWEMVSGAIPYEDMTPIQAAFAVVNKNLRPVISSDCPLAMRALIEQCWSLQPDKRPDFWQVVKVLEQFESSLARDGTLNLLGNPLSSFQDHKKGLLHWIQKLGPLHPEIAPSPVPKPKFS | 494 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 2761648 | 2765423 | + | Lsi01G003110.1 | Lsi01g00311 | 652969 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi01g00311 | 494 | MobiDBLite | consensus disorder prediction | 125 | 139 | - | - | |
Lsi01g00311 | 494 | PRINTS | Tyrosine kinase catalytic domain signature | 366 | 388 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi01g00311 | 494 | PRINTS | Tyrosine kinase catalytic domain signature | 410 | 432 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi01g00311 | 494 | PRINTS | Tyrosine kinase catalytic domain signature | 263 | 276 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi01g00311 | 494 | PRINTS | Tyrosine kinase catalytic domain signature | 301 | 319 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi01g00311 | 494 | PRINTS | Tyrosine kinase catalytic domain signature | 347 | 357 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi01g00311 | 494 | MobiDBLite | consensus disorder prediction | 43 | 86 | - | - | |
Lsi01g00311 | 494 | ProSiteProfiles | Protein kinase domain profile. | 183 | 443 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi01g00311 | 494 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 3 | 466 | - | - | |
Lsi01g00311 | 494 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 307 | 319 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi01g00311 | 494 | MobiDBLite | consensus disorder prediction | 87 | 124 | - | - | |
Lsi01g00311 | 494 | MobiDBLite | consensus disorder prediction | 36 | 151 | - | - | |
Lsi01g00311 | 494 | PANTHER | TYROSINE KINASE FAMILY PROTEIN | 3 | 466 | - | - | |
Lsi01g00311 | 494 | Gene3D | Phosphorylase Kinase; domain 1 | 171 | 267 | - | - | |
Lsi01g00311 | 494 | Pfam | Protein tyrosine and serine/threonine kinase | 190 | 439 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi01g00311 | 494 | CDD | STKc_MAP3K-like | 190 | 439 | - | - | |
Lsi01g00311 | 494 | SMART | serkin_6 | 183 | 442 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi01g00311 | 494 | Gene3D | Transferase(Phosphotransferase) domain 1 | 268 | 458 | - | - | |
Lsi01g00311 | 494 | SUPERFAMILY | Protein kinase-like (PK-like) | 167 | 439 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00311 | Lsi-Chr1:2761648 | Lsi02g00366 | Lsi-Chr2:3140797 | 1.19E-114 | dispersed | |
Lsi11g00832 | Lsi-Chr11:10353365 | Lsi01g00311 | Lsi-Chr1:2761648 | 5.77E-69 | transposed | |
Lsi01g00311 | Lsi-Chr1:2761648 | Lsi02g00759 | Lsi-Chr2:6999270 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83237 | PF07714 | PK_Tyr_Ser-Thr | 1.20E-60 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi01g00311 | - | - | csv:101204268 | 958.747 |