Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00311 ATGGACGAAGAGGCTAATTCTTGGCTTAGGAGAACGAAGTTTTCTCACACAGTTTATCATCGATGGGACTCATTAAGATTAAACCCAGTTCCTTTCATCGTCGAACCACCTCGCAATTCCGGCTTGAAATCGCGGCCTCAACCAGCTTCATCCACTCAGAAACCAAATCCTGATATTTCGAAGATTCAGCGAAGTTTCATATCCAGTAAACAGAGGTCTCTGTCTCCTCTTCCCCAGAGCAACTTCTCTGAAGTTTTCAAGGAAGCAAAATCCGATAGTAAGAGATTCTCAACTCCAACTCCTCGACTTAGAGAACGAACTAAGGAATTGAAGAACAAGCTATTCAACAAGGACCCTCAAGATTCAAAATCGGCCGATTCGAAGTCATCGTTGAATACCAGTCCCCTGAAACTCCTATCTTCGGGGAAAGGGGGTGATAAGTCCAAGTTCCGGAAGGACTCTTCCTGGACCAAATATTTCGATTCCGGTGGAGGAAAAGTCACCGCGGTCGAAACAGCTGATGACTGGACTGTCGATCTCTCCAAGTTGTTTGTTGGGTTAAGGTTTGCTCATGGAGCTCACAGTCGTCTTTATCATGGAAAATACAATGATGAACCTGTTGCTGTTAAAATTATTAGAGTGCCCGAGGATGACGAAAATGGAACGCTTGCTTCTCGATTGGAGAAGCAATTCACCAGAGAAGTTACCCTTTTATCTCGTCTCCATCATCCGAATGTTATAAAGTTTGTAGCTGCGTGTAGGAACCCACCTGTATACTGTGTCATTACTGAATATTTGTCTCAAGGATCATTAAGGGCATACTTACACAAACTTGAGCACCAATCCCTCCCTTTGCAAAAACTAATTCAATTTGCTTTAGATGTCGCTCGTGGCATGGAATACCTTCACTCACAAGGCGTAATTCATCGAGATCTTAAGCCTGAGAATGTTCTTATTGATGAAGACTTCCACTTGAAAATTGCAGATTTTGGTATAGCTTGTCCTGAGGCCTTTTTTGACCCATTAGCTGATGATCCTGGAACGTATCGATGGATGGCACCGGAGATGATCAAACATAAACCTTGTTGTCGAAAGGTCGATGTGTACAGCTTTGGGCTTATGTTGTGGGAAATGGTGTCAGGTGCAATTCCATACGAGGATATGACTCCCATTCAAGCAGCCTTTGCTGTTGTGAATAAGAATCTTAGGCCTGTTATCTCAAGTGATTGTCCGTTGGCAATGCGGGCTTTAATCGAGCAATGTTGGTCCCTACAACCGGACAAGAGACCCGATTTCTGGCAGGTTGTGAAGGTACTAGAGCAATTCGAATCTTCGCTTGCCCGTGATGGGACACTGAATTTATTAGGTAATCCTCTGTCTAGTTTCCAAGACCATAAGAAAGGGCTTCTCCATTGGATTCAAAAGCTTGGCCCCTTGCATCCCGAAATCGCACCCTCGCCCGTGCCGAAACCGAAATTCTCATAA 1485 44.31 MDEEANSWLRRTKFSHTVYHRWDSLRLNPVPFIVEPPRNSGLKSRPQPASSTQKPNPDISKIQRSFISSKQRSLSPLPQSNFSEVFKEAKSDSKRFSTPTPRLRERTKELKNKLFNKDPQDSKSADSKSSLNTSPLKLLSSGKGGDKSKFRKDSSWTKYFDSGGGKVTAVETADDWTVDLSKLFVGLRFAHGAHSRLYHGKYNDEPVAVKIIRVPEDDENGTLASRLEKQFTREVTLLSRLHHPNVIKFVAACRNPPVYCVITEYLSQGSLRAYLHKLEHQSLPLQKLIQFALDVARGMEYLHSQGVIHRDLKPENVLIDEDFHLKIADFGIACPEAFFDPLADDPGTYRWMAPEMIKHKPCCRKVDVYSFGLMLWEMVSGAIPYEDMTPIQAAFAVVNKNLRPVISSDCPLAMRALIEQCWSLQPDKRPDFWQVVKVLEQFESSLARDGTLNLLGNPLSSFQDHKKGLLHWIQKLGPLHPEIAPSPVPKPKFS 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2761648 2765423 + Lsi01G003110.1 Lsi01g00311 652969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00311 494 MobiDBLite consensus disorder prediction 125 139 - -
Lsi01g00311 494 PRINTS Tyrosine kinase catalytic domain signature 366 388 IPR001245 GO:0004672|GO:0006468
Lsi01g00311 494 PRINTS Tyrosine kinase catalytic domain signature 410 432 IPR001245 GO:0004672|GO:0006468
Lsi01g00311 494 PRINTS Tyrosine kinase catalytic domain signature 263 276 IPR001245 GO:0004672|GO:0006468
Lsi01g00311 494 PRINTS Tyrosine kinase catalytic domain signature 301 319 IPR001245 GO:0004672|GO:0006468
Lsi01g00311 494 PRINTS Tyrosine kinase catalytic domain signature 347 357 IPR001245 GO:0004672|GO:0006468
Lsi01g00311 494 MobiDBLite consensus disorder prediction 43 86 - -
Lsi01g00311 494 ProSiteProfiles Protein kinase domain profile. 183 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00311 494 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 3 466 - -
Lsi01g00311 494 ProSitePatterns Serine/Threonine protein kinases active-site signature. 307 319 IPR008271 GO:0004672|GO:0006468
Lsi01g00311 494 MobiDBLite consensus disorder prediction 87 124 - -
Lsi01g00311 494 MobiDBLite consensus disorder prediction 36 151 - -
Lsi01g00311 494 PANTHER TYROSINE KINASE FAMILY PROTEIN 3 466 - -
Lsi01g00311 494 Gene3D Phosphorylase Kinase; domain 1 171 267 - -
Lsi01g00311 494 Pfam Protein tyrosine and serine/threonine kinase 190 439 IPR001245 GO:0004672|GO:0006468
Lsi01g00311 494 CDD STKc_MAP3K-like 190 439 - -
Lsi01g00311 494 SMART serkin_6 183 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00311 494 Gene3D Transferase(Phosphotransferase) domain 1 268 458 - -
Lsi01g00311 494 SUPERFAMILY Protein kinase-like (PK-like) 167 439 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00311 Lsi-Chr1:2761648 Lsi02g00366 Lsi-Chr2:3140797 1.19E-114 dispersed
Lsi11g00832 Lsi-Chr11:10353365 Lsi01g00311 Lsi-Chr1:2761648 5.77E-69 transposed
Lsi01g00311 Lsi-Chr1:2761648 Lsi02g00759 Lsi-Chr2:6999270 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83237 PF07714 PK_Tyr_Ser-Thr 1.20E-60 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00311 - - csv:101204268 958.747