Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00341 ATGGGTTGTCCAAATTGGAATTTGTTCATGAAGATCCTAATTGGGCTGCTCTTGCTCTTCATCAACTCTTTTTGTTTTGGAGATACTGACCTCCGCGATGTTGCTGCAATCAATGCATTATTTATTTCTCTTGGCTACCCTCCTTTGCGAGGATGGATTCTTGTGGGAGGTGATCCATGTGGGGAGAAGTGGCAAGGGGTTGAATGTGTATTCTCAAATATAACAGCGATACAACTCAGTGGCTTGAATTTGGGAGGAGAGCTAGGGACTAGCTTGGACCAATTCGAGTCGATAATATCAATGGATCTTAGCAACAATCATATTGGAGGGAATATTCCATCTACATTGCCCGCTACACTGAGAAGTTTTTCTTTATCAGCTAATCAATTCACGGGAAGCATTCCTCCTGCACTGGCCTCGCTAACACAACTAATGGACCTGTCACTAAATAACAACCTTCTTACTGGGGTAATACCTGATGTCTTCCAGCTGCTTAATGGCTTGAATAACTTGGACTTGTCAGGCAACAACTTGAGCGGTCAGCTGCCTCCCTCGATGGCTGATTTGTTCTCCCTTACTACATTGCATTTGCAGAACAATCAACTTTCTGGGATGCTTGACGCTCTACAGGATCTTCCGTTGTCGGATTTGAATATAGAGAACAACCTATTTTCTGGACCTATACCTGCAAAGTTGTTGGGCATTCCAAATTTCAGAAAAGATGGGAACCCTTTTAATACTACGATAATTCCGTCTGCACCTGCTTTAGCCCCTTCACCATTTGCTGTTGCGCCAGTTACTGTGGGACAACCAACCAGACAGACAGGTGCAGGCCAGCCATTGTCACCGGGGACTCCTGAATCGACTGGAGCAAGGAGTTTTTTCTCTGTTAAGCGGATCGTTTGGATTGTTATTATTGGCACAGTAATATTAGTAGCATTGGGATTCTGTCTTCTCGTGTCGATATGCTTGAAAAGAAGCAAGCATCGAGAAGACACCAAGATTCTTCGTGACAACGCTGATATGGCTTCTAAATATAAGCCTAAACCTACAAAGCCCTTGGTCGAAGGTGATGACATGGAGAAAGGTCCAAGGGAGACCACTCTTAAGCCACTTGATAGAGACAGAATGAAGGATAGAATAATGGATTTTACCACCCCAAGGCTAAATGATAGACAGGACACACATGGGAAAAGAAAAGATGCCTCTAATACGATTTTTCGTAAAGAACATACGGAGAGTTCGAGCATAAGCATGGATGACTTCCCTCCACCGCCTCCTCCCCCTCCTTTTCCGCTCCTTTCAACTCAGGAGATTGCAAAACCAACTGTGACAGCTGAAGTGCCCAGTAGAGTACCTAGAAAACTGAACACAAGTTCTTTAAAAGTTTTCACAATTGCTTCACTTCAGCAGTATACTAATAGTTTCTCTGAAGATAATCTTCTTGGGAGAGGCATGCTTGGCAGTGTCTATAGAGCTGAACTTCCAAGTGGAAGGCTTCTGGCTGTTAAGAAACTGGATGGGTCCTCTTCAACTCATTGGAGTGATGAATTTCACAACCTTGTGTCTAATATATGCCAAATTCGGCACGATAACATTGTGGAGCTTGTGGGATATTGTGCTGAGCATGGACAATATCTACTCATTTATGAGTATTGCAAAAATGGAACTCTCTATGATGCACTCCATGTCGACAAGGAGATGCATCAGAAGCTTTCATGGAATGTACGCGTGAGGATTGCACTTGGAGCTGCACGTGCCCTCGAGTATCTGCATGAAGCCTGTCAACCGCCTATCATGCACCAAAATTTTAAGTCTGCTAACATTCTCTTGGACAATGAGCTAAAACCACAAGTTTCTGACTCTGGCTTAGCTCGGCTGCTTTCTTCAGCTAGTCAGTCATCTGCAAGATTCCTCCCAGCTCATGGTTATAGTGCTCCTGAATTCGAGTTAGGAACTTACACTTACCAAAGTGATATTTTTAGCTTCGGAGTCGTAATGCTAGAGCTTCTCACCGGTCGAAAGTCCTGTGACCGATCACTGCCTCGAGGAGAGCAATTTCTTGTTCGATGGGCTGTTCCAAGGCTCCATGATATCGATGCGTTATCAAGAATGGTCGATCCATCCCTTAATGGCACATATCCTGTTAAATCGTTATCGCGCTTTGCTGATATTATTTCCTCTTGTATAATGAGAGAGCCCGAATTTCGGCCCCCAATCTCTGAAATTGTACAGGAACTCTTACAAATGCTGTAG 2256 43.97 MGCPNWNLFMKILIGLLLLFINSFCFGDTDLRDVAAINALFISLGYPPLRGWILVGGDPCGEKWQGVECVFSNITAIQLSGLNLGGELGTSLDQFESIISMDLSNNHIGGNIPSTLPATLRSFSLSANQFTGSIPPALASLTQLMDLSLNNNLLTGVIPDVFQLLNGLNNLDLSGNNLSGQLPPSMADLFSLTTLHLQNNQLSGMLDALQDLPLSDLNIENNLFSGPIPAKLLGIPNFRKDGNPFNTTIIPSAPALAPSPFAVAPVTVGQPTRQTGAGQPLSPGTPESTGARSFFSVKRIVWIVIIGTVILVALGFCLLVSICLKRSKHREDTKILRDNADMASKYKPKPTKPLVEGDDMEKGPRETTLKPLDRDRMKDRIMDFTTPRLNDRQDTHGKRKDASNTIFRKEHTESSSISMDDFPPPPPPPPFPLLSTQEIAKPTVTAEVPSRVPRKLNTSSLKVFTIASLQQYTNSFSEDNLLGRGMLGSVYRAELPSGRLLAVKKLDGSSSTHWSDEFHNLVSNICQIRHDNIVELVGYCAEHGQYLLIYEYCKNGTLYDALHVDKEMHQKLSWNVRVRIALGAARALEYLHEACQPPIMHQNFKSANILLDNELKPQVSDSGLARLLSSASQSSARFLPAHGYSAPEFELGTYTYQSDIFSFGVVMLELLTGRKSCDRSLPRGEQFLVRWAVPRLHDIDALSRMVDPSLNGTYPVKSLSRFADIISSCIMREPEFRPPISEIVQELLQML 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2992647 2999219 + Lsi01G003410.1 Lsi01g00341 652999

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00341 751 SUPERFAMILY Protein kinase-like (PK-like) 453 747 IPR011009 -
Lsi01g00341 751 MobiDBLite consensus disorder prediction 344 368 - -
Lsi01g00341 751 Pfam Protein tyrosine and serine/threonine kinase 480 747 IPR001245 GO:0004672|GO:0006468
Lsi01g00341 751 ProSiteProfiles Leucine-rich repeat profile. 191 213 IPR001611 GO:0005515
Lsi01g00341 751 MobiDBLite consensus disorder prediction 388 430 - -
Lsi01g00341 751 SMART LRR_typ_2 189 211 IPR003591 -
Lsi01g00341 751 SMART LRR_typ_2 141 164 IPR003591 -
Lsi01g00341 751 MobiDBLite consensus disorder prediction 270 289 - -
Lsi01g00341 751 Gene3D Phosphorylase Kinase; domain 1 441 552 - -
Lsi01g00341 751 Gene3D Transferase(Phosphotransferase) domain 1 553 751 - -
Lsi01g00341 751 Gene3D Ribonuclease Inhibitor 36 253 IPR032675 -
Lsi01g00341 751 MobiDBLite consensus disorder prediction 388 416 - -
Lsi01g00341 751 PANTHER LEUCINE RICH REPEAT KINASE 2 10 751 - -
Lsi01g00341 751 ProSiteProfiles Protein kinase domain profile. 476 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00341 751 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515
Lsi01g00341 751 SUPERFAMILY L domain-like 35 237 - -
Lsi01g00341 751 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 10 751 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00341 - - - cmo:103484543 1306.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00341 Lsi-Chr1:2992647 Lsi02g02850 Lsi-Chr2:34678825 2.13E-162 dispersed
Lsi01g00341 Lsi-Chr1:2992647 Lsi11g01525 Lsi-Chr11:23648953 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi11g01525 . 34 784 Strubbelig Receptor Gene Family AT4G03390 62.1 1.9e-204 709.5
Lsi01g00341 . 17 751 Strubbelig Receptor Gene Family AT4G03390 54.1 4.2e-164 575.5
Lsi03g01722 . 9 735 Strubbelig Receptor Gene Family AT5G06820 53.5 5.7e-187 651.4
Lsi02g01068 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.7 3.5e-85 313.2
Lsi02g02850 . 425 740 Strubbelig Receptor Gene Family AT1G11130 50.3 1.1e-80 298.1
Lsi03g01722 . 9 735 Strubbelig Receptor Gene Family AT5G06820 53.5 5.7e-187 651.4
Lsi11g01525 . 34 784 Strubbelig Receptor Gene Family AT4G03390 62.1 1.9e-204 709.5
Lsi01g00341 . 17 751 Strubbelig Receptor Gene Family AT4G03390 54.1 4.2e-164 575.5
Lsi07g00634 . 1 765 Strubbelig Receptor Gene Family AT1G53730 56.2 1.3e-204 709.9
Lsi02g02850 . 1 767 Strubbelig Receptor Gene Family AT1G53730 55.5 1.3e-180 630.2
Lsi02g02850 . 6 757 Strubbelig Receptor Gene Family AT3G14350 51.2 3.9e-161 565.5
Lsi02g01068 . 149 711 Strubbelig Receptor Gene Family AT4G22130 63.8 8.8e-180 627.1
Lsi02g02850 . 419 759 Strubbelig Receptor Gene Family AT4G22130 60.1 4.2e-113 405.6
Lsi07g00634 . 404 781 Strubbelig Receptor Gene Family AT4G22130 54.5 1.5e-110 397.1
Lsi11g01525 . 481 776 Strubbelig Receptor Gene Family AT4G22130 61.6 2.0e-107 386.7
Lsi01g00341 . 464 751 Strubbelig Receptor Gene Family AT4G22130 60.5 2.2e-98 356.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007627 1 3 1 0 1 0 2 0 0 1 1 0 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 0 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83238 PF07714 PK_Tyr_Ser-Thr 1.40E-38 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00341 Lsi_Chr01 FPKM 13.739806 13.224865 15.327003 15.748482 11.791252 12.643865 12.297656 15.087788 15.526048 18.545378