Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00341 ATGGGTTGTCCAAATTGGAATTTGTTCATGAAGATCCTAATTGGGCTGCTCTTGCTCTTCATCAACTCTTTTTGTTTTGGAGATACTGACCTCCGCGATGTTGCTGCAATCAATGCATTATTTATTTCTCTTGGCTACCCTCCTTTGCGAGGATGGATTCTTGTGGGAGGTGATCCATGTGGGGAGAAGTGGCAAGGGGTTGAATGTGTATTCTCAAATATAACAGCGATACAACTCAGTGGCTTGAATTTGGGAGGAGAGCTAGGGACTAGCTTGGACCAATTCGAGTCGATAATATCAATGGATCTTAGCAACAATCATATTGGAGGGAATATTCCATCTACATTGCCCGCTACACTGAGAAGTTTTTCTTTATCAGCTAATCAATTCACGGGAAGCATTCCTCCTGCACTGGCCTCGCTAACACAACTAATGGACCTGTCACTAAATAACAACCTTCTTACTGGGGTAATACCTGATGTCTTCCAGCTGCTTAATGGCTTGAATAACTTGGACTTGTCAGGCAACAACTTGAGCGGTCAGCTGCCTCCCTCGATGGCTGATTTGTTCTCCCTTACTACATTGCATTTGCAGAACAATCAACTTTCTGGGATGCTTGACGCTCTACAGGATCTTCCGTTGTCGGATTTGAATATAGAGAACAACCTATTTTCTGGACCTATACCTGCAAAGTTGTTGGGCATTCCAAATTTCAGAAAAGATGGGAACCCTTTTAATACTACGATAATTCCGTCTGCACCTGCTTTAGCCCCTTCACCATTTGCTGTTGCGCCAGTTACTGTGGGACAACCAACCAGACAGACAGGTGCAGGCCAGCCATTGTCACCGGGGACTCCTGAATCGACTGGAGCAAGGAGTTTTTTCTCTGTTAAGCGGATCGTTTGGATTGTTATTATTGGCACAGTAATATTAGTAGCATTGGGATTCTGTCTTCTCGTGTCGATATGCTTGAAAAGAAGCAAGCATCGAGAAGACACCAAGATTCTTCGTGACAACGCTGATATGGCTTCTAAATATAAGCCTAAACCTACAAAGCCCTTGGTCGAAGGTGATGACATGGAGAAAGGTCCAAGGGAGACCACTCTTAAGCCACTTGATAGAGACAGAATGAAGGATAGAATAATGGATTTTACCACCCCAAGGCTAAATGATAGACAGGACACACATGGGAAAAGAAAAGATGCCTCTAATACGATTTTTCGTAAAGAACATACGGAGAGTTCGAGCATAAGCATGGATGACTTCCCTCCACCGCCTCCTCCCCCTCCTTTTCCGCTCCTTTCAACTCAGGAGATTGCAAAACCAACTGTGACAGCTGAAGTGCCCAGTAGAGTACCTAGAAAACTGAACACAAGTTCTTTAAAAGTTTTCACAATTGCTTCACTTCAGCAGTATACTAATAGTTTCTCTGAAGATAATCTTCTTGGGAGAGGCATGCTTGGCAGTGTCTATAGAGCTGAACTTCCAAGTGGAAGGCTTCTGGCTGTTAAGAAACTGGATGGGTCCTCTTCAACTCATTGGAGTGATGAATTTCACAACCTTGTGTCTAATATATGCCAAATTCGGCACGATAACATTGTGGAGCTTGTGGGATATTGTGCTGAGCATGGACAATATCTACTCATTTATGAGTATTGCAAAAATGGAACTCTCTATGATGCACTCCATGTCGACAAGGAGATGCATCAGAAGCTTTCATGGAATGTACGCGTGAGGATTGCACTTGGAGCTGCACGTGCCCTCGAGTATCTGCATGAAGCCTGTCAACCGCCTATCATGCACCAAAATTTTAAGTCTGCTAACATTCTCTTGGACAATGAGCTAAAACCACAAGTTTCTGACTCTGGCTTAGCTCGGCTGCTTTCTTCAGCTAGTCAGTCATCTGCAAGATTCCTCCCAGCTCATGGTTATAGTGCTCCTGAATTCGAGTTAGGAACTTACACTTACCAAAGTGATATTTTTAGCTTCGGAGTCGTAATGCTAGAGCTTCTCACCGGTCGAAAGTCCTGTGACCGATCACTGCCTCGAGGAGAGCAATTTCTTGTTCGATGGGCTGTTCCAAGGCTCCATGATATCGATGCGTTATCAAGAATGGTCGATCCATCCCTTAATGGCACATATCCTGTTAAATCGTTATCGCGCTTTGCTGATATTATTTCCTCTTGTATAATGAGAGAGCCCGAATTTCGGCCCCCAATCTCTGAAATTGTACAGGAACTCTTACAAATGCTGTAG 2256 43.97 MGCPNWNLFMKILIGLLLLFINSFCFGDTDLRDVAAINALFISLGYPPLRGWILVGGDPCGEKWQGVECVFSNITAIQLSGLNLGGELGTSLDQFESIISMDLSNNHIGGNIPSTLPATLRSFSLSANQFTGSIPPALASLTQLMDLSLNNNLLTGVIPDVFQLLNGLNNLDLSGNNLSGQLPPSMADLFSLTTLHLQNNQLSGMLDALQDLPLSDLNIENNLFSGPIPAKLLGIPNFRKDGNPFNTTIIPSAPALAPSPFAVAPVTVGQPTRQTGAGQPLSPGTPESTGARSFFSVKRIVWIVIIGTVILVALGFCLLVSICLKRSKHREDTKILRDNADMASKYKPKPTKPLVEGDDMEKGPRETTLKPLDRDRMKDRIMDFTTPRLNDRQDTHGKRKDASNTIFRKEHTESSSISMDDFPPPPPPPPFPLLSTQEIAKPTVTAEVPSRVPRKLNTSSLKVFTIASLQQYTNSFSEDNLLGRGMLGSVYRAELPSGRLLAVKKLDGSSSTHWSDEFHNLVSNICQIRHDNIVELVGYCAEHGQYLLIYEYCKNGTLYDALHVDKEMHQKLSWNVRVRIALGAARALEYLHEACQPPIMHQNFKSANILLDNELKPQVSDSGLARLLSSASQSSARFLPAHGYSAPEFELGTYTYQSDIFSFGVVMLELLTGRKSCDRSLPRGEQFLVRWAVPRLHDIDALSRMVDPSLNGTYPVKSLSRFADIISSCIMREPEFRPPISEIVQELLQML 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2992647 2999219 + Lsi01G003410.1 Lsi01g00341 652999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00341 751 SUPERFAMILY Protein kinase-like (PK-like) 453 747 IPR011009 -
Lsi01g00341 751 MobiDBLite consensus disorder prediction 344 368 - -
Lsi01g00341 751 Pfam Protein tyrosine and serine/threonine kinase 480 747 IPR001245 GO:0004672|GO:0006468
Lsi01g00341 751 ProSiteProfiles Leucine-rich repeat profile. 191 213 IPR001611 GO:0005515
Lsi01g00341 751 MobiDBLite consensus disorder prediction 388 430 - -
Lsi01g00341 751 SMART LRR_typ_2 189 211 IPR003591 -
Lsi01g00341 751 SMART LRR_typ_2 141 164 IPR003591 -
Lsi01g00341 751 MobiDBLite consensus disorder prediction 270 289 - -
Lsi01g00341 751 Gene3D Phosphorylase Kinase; domain 1 441 552 - -
Lsi01g00341 751 Gene3D Transferase(Phosphotransferase) domain 1 553 751 - -
Lsi01g00341 751 Gene3D Ribonuclease Inhibitor 36 253 IPR032675 -
Lsi01g00341 751 MobiDBLite consensus disorder prediction 388 416 - -
Lsi01g00341 751 PANTHER LEUCINE RICH REPEAT KINASE 2 10 751 - -
Lsi01g00341 751 ProSiteProfiles Protein kinase domain profile. 476 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00341 751 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515
Lsi01g00341 751 SUPERFAMILY L domain-like 35 237 - -
Lsi01g00341 751 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 10 751 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00341 Lsi-Chr1:2992647 Lsi02g02850 Lsi-Chr2:34678825 2.13E-162 dispersed
Lsi01g00341 Lsi-Chr1:2992647 Lsi11g01525 Lsi-Chr11:23648953 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83238 PF07714 PK_Tyr_Ser-Thr 1.40E-38 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00341 - - cmo:103484543 1306.58