Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00372 ATGGGTAGCAATTGCAGAAAGGTTGTTGGGTTTCTTCAATTCTTTGTCATTTTATTCTTCCTCTGTTTTTCTTCTCTGTTTTGCGACGCTGCAAATTCAATTACAAAGGGAAGAGGTTTAAGAGACGGTACTAATGAAACCCTCATATCCCTGAATGAGTCCTACGAATTGGGGTTCTTCAGCCCCATAAATTCTTCATCACGATACGTGGGAATATGGTATCACAAGATCGAGGAACAGTCTGTTATTTGGGTTGCGAATAGAGATAGGCCACTTCGTAACAGAGATGGGGTTTTGATAATCGGTGACGACGGGAACTTGGTCGTTCTGGACGGCAACAACGTCTCTGTTTGGACAAGCAACATCACAGCGAATGCGTTTGATCCCAGAAACTTAACTCTTCATAACCATGGAGAATTGGTTCTCACGAGCGGAGAAGACTCATCGAAAGTTCATTGGAGCAGCTTCGAACACCCCACAGATACATTTCTTCCGAATATGGTGGTGAGAGTGAACTCAGAAATTGGCGAGAAACGAATGTTTATGTCATGGAAATCGGAGACCGATCCGGCCGTCGGAAATTACTGCCTGGGTGTGGATCCTCGTGGAGCTGTACAGATTATCATTTGGAATGGAAATAATCGATGGTGGAGAAGCGGCCACTGGGACAGGCAGATTTTTTCTGGGATTCCAACTATGCGTTCGACGTCGTTGTACGGCTTCAAGATTATCCCTGAAAATGGAAATAACATTAGTGTATCTTTTCAGGCACTGAATGATACCGATAAGCTGAAATTTCAAATCCTGTGGAATGGTAGTGAAGCACAGCAACGATTGATTGAAACAAATCGCAAATGGGAAACGACTCGTTTACTGCCATCTAACGATTGCGATTTCTACAATTTTTGTGGGGATTTTGGGGTTTGTTCTGAAACGAGTCGTCCTAAGTGTAGCTGCCCTCAAGGGTTTATACCCAAAAACAAAGAACAATGGGACAGAGAGATTTGGTCAGATGGGTGTCAGAGGAAGACTCCATTGCTTCAGCAGAGAATAAACAGTAATCCAAATGGAACTATTGAAGATGGTGAAGAAGATGGGTTTGTGCCCGTACCATTTGTGAAATTGCCTGATTTCATAACTGGAGTATTTGTGGTCGACTCGTGTAAAGATAGATGTTCGAACAGTTCTTCGTGTGTTGCATATTCAGATGCTCCTGGAATTGGGTGCGCTACTTGGGATGGACCTTTAATAGATATTCAGAAATTTGATGGTGTTGGGAATACTTTGAACATTCGTCTCGCTCATTCTGATTTGATATCTGTAGATAGCGAGAGCAAATTGTCAGCCGGTGTGATAGTATTGATATGTTTAGGAGGAGCAGCTGCCATAGCCATAATAGCATTGCTGCTATGGAAATTCAGAGGCAAAATGAAAGGTTCAGCGGCTGCTTCTTCAAGTGAACCTCAGAACAAAACTGAAGTACCAATGTTTGACCTGAGCAAGAGCAAAGAACTTTCAGCAGAGCTTTCAGGGCCATACGAATTAGGCATAGAAAGTGAACAATTGAGTGGACCAGATTTGCCAATGTTCAATTTCAACTGTATAGTTACGGCTACTGATAACTTTTCCGAGGAAAACAAGCTTGGCCAGGGAGGCTTCGGCCCTGTATACAAGGGAAAGCTTCCATGTGGACAAGAAATTGCTGTCAAGAGGCTTTCAGTCCGGTCTGGCCAAGGTCTAGAAGAGTTTAAGAATGAGATTATACTAATAGGAAAGTTACAGCATCGAAACCTCGTCAGACTGTTGGGCTACTGCATTCAAGGAGAGGACAAGATGCTGCTCTATGAATATATGCCAAACAAAAGCTTGGATTGGTTTCTTTTCGATCCAAACAAGAAGGCACTACTAGATTGGAGAAAACGGTTGTCAATCATCGAAGGAATTGCACGAGGGCTGCTATACCTTCATCGAGACTCGAGACTTCTTATTATTCATAGAGATTTGAAAGCAAGCAACATTTTACTAGATGAAGACATGAATCCAAAAATATCGGACTTTGGCATGGCTAGAATATTTGGTGGAAACCAAAATGAGGCGACAAATACAATTCGAGTTGTTGGCACATATGGTTACATGGCTCCAGAGTATGCAATGGAAGGTTTATTTTCGGTGAAATCAGACGTCTATAGTTTTGGTGTATTATTATTGGAATTAATCTGTGGTCGGAGGAACACTAGCTTTCGCTCAACTGAATACTTAACCCTTATTAGCTATGCCTGGAAACTTTGGAATGAAGGAAGAGTGATTGAACTTCTCGACCCATCTATTAGCGATTCATCCCCTGAGAATGAAGTATTGAAATGCATACATGTGGCAATGTTGTGTGTTCAAGACTCACCAGCATATAGACCAACATTGCAATCCTTGGTGCTAATGCTAGAGAGTGAATCTACATCTCTACCACAGCCGAGACAACCCACCTATACTTCAACGAGAGCCTCGATCGATACAGACTTGTTTACTGAAGGCCACGACATTGTATCGTCGAACGATGTAACGGTAACAATGTTGGATGGTAGATAG 2583 42.43 MGSNCRKVVGFLQFFVILFFLCFSSLFCDAANSITKGRGLRDGTNETLISLNESYELGFFSPINSSSRYVGIWYHKIEEQSVIWVANRDRPLRNRDGVLIIGDDGNLVVLDGNNVSVWTSNITANAFDPRNLTLHNHGELVLTSGEDSSKVHWSSFEHPTDTFLPNMVVRVNSEIGEKRMFMSWKSETDPAVGNYCLGVDPRGAVQIIIWNGNNRWWRSGHWDRQIFSGIPTMRSTSLYGFKIIPENGNNISVSFQALNDTDKLKFQILWNGSEAQQRLIETNRKWETTRLLPSNDCDFYNFCGDFGVCSETSRPKCSCPQGFIPKNKEQWDREIWSDGCQRKTPLLQQRINSNPNGTIEDGEEDGFVPVPFVKLPDFITGVFVVDSCKDRCSNSSSCVAYSDAPGIGCATWDGPLIDIQKFDGVGNTLNIRLAHSDLISVDSESKLSAGVIVLICLGGAAAIAIIALLLWKFRGKMKGSAAASSSEPQNKTEVPMFDLSKSKELSAELSGPYELGIESEQLSGPDLPMFNFNCIVTATDNFSEENKLGQGGFGPVYKGKLPCGQEIAVKRLSVRSGQGLEEFKNEIILIGKLQHRNLVRLLGYCIQGEDKMLLYEYMPNKSLDWFLFDPNKKALLDWRKRLSIIEGIARGLLYLHRDSRLLIIHRDLKASNILLDEDMNPKISDFGMARIFGGNQNEATNTIRVVGTYGYMAPEYAMEGLFSVKSDVYSFGVLLLELICGRRNTSFRSTEYLTLISYAWKLWNEGRVIELLDPSISDSSPENEVLKCIHVAMLCVQDSPAYRPTLQSLVLMLESESTSLPQPRQPTYTSTRASIDTDLFTEGHDIVSSNDVTVTMLDGR 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3277497 3281423 + Lsi01G003720.1 Lsi01g00372 653030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00372 860 ProSiteProfiles EGF-like domain profile. 293 329 IPR000742 -
Lsi01g00372 860 Pfam PAN-like domain 363 419 IPR003609 -
Lsi01g00372 860 Gene3D Transferase(Phosphotransferase) domain 1 618 831 - -
Lsi01g00372 860 Gene3D - 26 156 IPR036426 -
Lsi01g00372 860 CDD STKc_IRAK 548 814 - -
Lsi01g00372 860 Pfam Protein tyrosine and serine/threonine kinase 545 811 IPR001245 GO:0004672|GO:0006468
Lsi01g00372 860 SMART blect_4 39 159 IPR001480 -
Lsi01g00372 860 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 13 860 - -
Lsi01g00372 860 Pfam S-locus glycoprotein domain 217 327 IPR000858 GO:0048544
Lsi01g00372 860 ProSiteProfiles Protein kinase domain profile. 542 828 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00372 860 PIRSF SRK 4 860 IPR024171 GO:0004674
Lsi01g00372 860 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 13 860 - -
Lsi01g00372 860 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 190 IPR036426 -
Lsi01g00372 860 ProSitePatterns Serine/Threonine protein kinases active-site signature. 663 675 IPR008271 GO:0004672|GO:0006468
Lsi01g00372 860 SUPERFAMILY Protein kinase-like (PK-like) 527 837 IPR011009 -
Lsi01g00372 860 CDD PAN_AP_plant 360 434 - -
Lsi01g00372 860 CDD B_lectin 43 159 IPR001480 -
Lsi01g00372 860 SMART serkin_6 542 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00372 860 ProSiteProfiles Bulb-type lectin domain profile. 31 155 IPR001480 -
Lsi01g00372 860 Pfam D-mannose binding lectin 82 185 IPR001480 -
Lsi01g00372 860 Gene3D Phosphorylase Kinase; domain 1 514 617 - -
Lsi01g00372 860 Pfam Domain of unknown function (DUF3403) 815 860 IPR021820 GO:0004674
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00372 Lsi-Chr1:3277497 Lsi02g00691 Lsi-Chr2:6176968 0 dispersed
Lsi02g00692 Lsi-Chr2:6191270 Lsi01g00372 Lsi-Chr1:3277497 1.17E-85 dispersed
Lsi01g00372 Lsi-Chr1:3277497 Lsi10g00851 Lsi-Chr10:12522500 1.04E-47 wgd
Lsi01g00372 Lsi-Chr1:3277497 Lsi11g01496 Lsi-Chr11:23434550 1.74E-55 wgd
Lsi01g00372 Lsi-Chr1:3277497 Lsi02g00673 Lsi-Chr2:6041239 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83239 PF07714 PK_Tyr_Ser-Thr 7.70E-47 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00372 - - csv:101207147 1546.18