Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00373 ATGGCGGCTCCATTTCCAGATGATTTCAAGTGCCCTATTTCTCTGGAAATAATGTCGGACCCTGTAATACTCTCCTCCGGCCACACCTTTGATCGTTCTTCAATCCAGCGCTGGCTCGACGCCGGTCACCGGACTTGCCCAATCACCCAATTGCCCCTTCCTCAAAACCCTTCCCTAATCCCTAACCATGCCCTCCGAAGCTTAATTTCAAATTTCAACCCTGTTTCACTTTCCAAGCCATTTCTCCCTCATCCGCCGCCTCAAACCCTAATCTCGATTCTCATCTCTCCTTCTTCCTCCCTCGATTCCAAGCTCGATTGCCTCAATCAACTCGCCAGGGTTTCAAAGCGCGATTCCGCTATGCGTCGAAGATTGACCGAGTCCGGTGCCGTCTCGGCCGTTCTTAAATGCGTCCGTTCTGACGATCCCAGCCTCCAAGAGAAGGCTCTCTCGCTCTTGCTTAATCTTAGTTTGGACGATGATAACAAAGTGGGTTTGGTTGCAGAGGGAGCTATTGGTCTCACCGTGGCTGCTCTTCAAGCGAGGTCCGCCGATTGCAGAGCCGTAGCGGCCACGATGCTGACGAGCTTGGCGGTTGTGGAGGTTAACAAGGCTACAATTGGGGCATATCCTTATGCGGTTCGTTCTCTGGTTTATCTCTTACGCAACGGCAGCATCAGAGAGCAGAAGGAAGCTGCAACTGCGCTTTACGCCATTTGTTCATTCCCTGGGAACCGTGTGCGGGCTGTGGAATGTGGGGCCGTTCCCATTTTGCTTAAAATTGCAAATTCTGGGCTGGATAGAGCAGTGGAAGTTCTGGGGGTTTTGGCGAAGTGCAAGGAAGGTCGAGAAGAGATGCAACGGTTCAAGGGATGTGTGGAGATTTTGGGTCGTGTTTTGAGAAACGGAGGCCCAAGAGGAGTTCAATATGCTCTTCTAACTCTGACTTCCCTCTGCTGCCATTGCGAGCGAGTGTGTGTGGAGGCCAGAAGAGAAGGCGTTTTGGGAATCTGTATGACATTGATTGATGACGATAATGAAAAGATCAGAGCAAATGCTGCAAATTTAATTCATTTACTCCGCGGAAACAACCCATGA 1098 50.64 MAAPFPDDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITQLPLPQNPSLIPNHALRSLISNFNPVSLSKPFLPHPPPQTLISILISPSSSLDSKLDCLNQLARVSKRDSAMRRRLTESGAVSAVLKCVRSDDPSLQEKALSLLLNLSLDDDNKVGLVAEGAIGLTVAALQARSADCRAVAATMLTSLAVVEVNKATIGAYPYAVRSLVYLLRNGSIREQKEAATALYAICSFPGNRVRAVECGAVPILLKIANSGLDRAVEVLGVLAKCKEGREEMQRFKGCVEILGRVLRNGGPRGVQYALLTLTSLCCHCERVCVEARREGVLGICMTLIDDDNEKIRANAANLIHLLRGNNP 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3288460 3289557 + Lsi01G003730.1 Lsi01g00373 653031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00373 365 SUPERFAMILY RING/U-box 3 72 - -
Lsi01g00373 365 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Lsi01g00373 365 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Lsi01g00373 365 Gene3D - 269 365 IPR011989 -
Lsi01g00373 365 Gene3D - 84 268 IPR011989 -
Lsi01g00373 365 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 8 1 361 - -
Lsi01g00373 365 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 129 171 IPR000225 GO:0005515
Lsi01g00373 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 76 IPR013083 -
Lsi01g00373 365 PANTHER U BOX DOMAIN-CONTAINING 1 361 - -
Lsi01g00373 365 CDD RING-Ubox_PUB 9 50 IPR045210 -
Lsi01g00373 365 SMART arm_5 118 158 IPR000225 GO:0005515
Lsi01g00373 365 SMART arm_5 159 199 IPR000225 GO:0005515
Lsi01g00373 365 SMART arm_5 279 320 IPR000225 GO:0005515
Lsi01g00373 365 SUPERFAMILY ARM repeat 88 360 IPR016024 -
Lsi01g00373 365 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00373 Lsi-Chr1:3288460 Lsi02g01363 Lsi-Chr2:18368167 4.33E-55 dispersed
Lsi01g00373 Lsi-Chr1:3288460 Lsi10g01368 Lsi-Chr10:17834008 3.14E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00373 - - csv:101213883 640.188