Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00382 ATGGCTATCGTCGAGTCAAGAACAAATAGAACCCCTCTGGACATCCATCCTATGATGCTTGAAGCTAGGATTCTGAAGCTAGGATTCGAGTTGATGAGGAATTCCAAGAGAACAAAGCTGGAGGAAGATGGAAAGAAATTGCGCCTTGCTGAAATGAATCGGAAATTTGGACTAGCTTCTATTAAAATAAAGGAAAGTCATAGCCAAAGAATTTGTGCCACCCTGCCAGTCTTTGTCAACCATGTCTGCATATATGAAGTAGGGAACTTCACCAGCAACAGCACCTATAAGACCAACCTCGATCATGTACTCTCCTCCATTGCCACTGCCAAAGATACTGGCTATGGCTTTTACAATTTTTCCTATGGCCAAAGCTCAGAATCAGCCAATGCTATTGGGCTCTGCCGAGGAGATATGAAGCCTGATGTTTGTCGAAGCTGCCTTAATGACTCTATATATTTTCTCACACTGCTATGTCCTGAGCAGAAAGAAGCAATTGGGTGGTATGATAACTGTATGTTACGCTATTCAAGTCGTCCCATATTTGGTGCAATGGAAGATGAACCCATATTCTTCACGTGGCTGACAAACGACACCATACCACAGGAAGAACTGTTCAGGCAGAACCTGTGGACATTGCTGGATGGCTTGAAAGATAATGCTTCTTCCGGTGGTTCCTTACAGAACTGTAATGTTAGATTTCAGATGTCCCTTTTCTTTGAGCCTTCTGTTGATTTGCCACCACAAGTGCCACAAATCTTTGTTCCTTCTAGCAATACCACGTCTTCAGAAGCTAGTGATGATGACATTATCCCCACTTCCTTGCAATATGATTTCAAGACGATTAGAGAAGCAACAGATGACTTTTCTATTTCAAATAAACTTGGACAAGGTGGATTTGGTGTTGTTTACAAGGGTAAGCTTTTCAATGGACAAGAAGTGGCTGTGAAAAGGCTAGCTCAAGGTTCGCAACAGGGTGACTTTGAATTTAAAAATGAAGTTTTACTGGTTGCTAAGCTGCAACACCGGAATCTGGTTCGACTTCTTGGCTTTTGCTTTGAGAAAGACGAAAGGCTCCTCATTTACGAGTTTTTACCTAATTCAAGCCTAGATCATTTCATATTTGATCCAATTCAACGGAAATATTTGGACTGGTCAAGACGTTACAAAATTATAGTTGGCATCAGTCGCGGACTCATGTATTTACATGAAGATTTTCAATTCAAAGTCATCCATCATGATCTTAAAGCTAGTAATATTTTATTAGATGGAGAGCTAAATCCAAAGATCGCTGATTTTGGAATGGCAAGGTTGACTTGCAACATTGAGACAAATATTGAACTTAATGTTTCTTATTTCAAGCGGATATATGGCCCCAGAGTATGCACTGTATGGACATTTTTCAGTAAAATCAAATGTGTTCAGTTTTGGTGTAATTCTCCTGGAGATCATGAGTGGCCAAAAGAACAGTTGCTTTCAAGATGGGGAAAATACAGAGCACCTTCTAAGCTATGTAATTCTAACACAAATTTGCCAAAGCAGACATGGAAAAATTCAATGGAAGGGAATGTCACGGCCATCATAGACCCAATACTGGCTAGAACTTGCATTGATGAAATCGTGAGATGTATCCATCTAGGATTACTGTGTGTTCAAGAAAATGTAGCTAGCAGACCGGCCATGGATTCAGTTGTTGTCATGCTCAATAGCAACTCCCTCACTCTACCTGTACCTTTGCGGCCCGGATTTTTGCTGCAGAGCAATACCTCAAACTTGCCACAGCATCTTGATGATGATTATACAGAAGGATCACATCATAGTCTATCTGAGAGCTTTTATGTTGAAGAAGAATCAGCAAGCCAGTAA 1866 40.73 MAIVESRTNRTPLDIHPMMLEARILKLGFELMRNSKRTKLEEDGKKLRLAEMNRKFGLASIKIKESHSQRICATLPVFVNHVCIYEVGNFTSNSTYKTNLDHVLSSIATAKDTGYGFYNFSYGQSSESANAIGLCRGDMKPDVCRSCLNDSIYFLTLLCPEQKEAIGWYDNCMLRYSSRPIFGAMEDEPIFFTWLTNDTIPQEELFRQNLWTLLDGLKDNASSGGSLQNCNVRFQMSLFFEPSVDLPPQVPQIFVPSSNTTSSEASDDDIIPTSLQYDFKTIREATDDFSISNKLGQGGFGVVYKGKLFNGQEVAVKRLAQGSQQGDFEFKNEVLLVAKLQHRNLVRLLGFCFEKDERLLIYEFLPNSSLDHFIFDPIQRKYLDWSRRYKIIVGISRGLMYLHEDFQFKVIHHDLKASNILLDGELNPKIADFGMARLTCNIETNIELNVSYFKRIYGPRVCTVWTFFSKIKCVQFWCNSPGDHEWPKEQLLSRWGKYRAPSKLCNSNTNLPKQTWKNSMEGNVTAIIDPILARTCIDEIVRCIHLGLLCVQENVASRPAMDSVVVMLNSNSLTLPVPLRPGFLLQSNTSNLPQHLDDDYTEGSHHSLSESFYVEEESASQ 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3339191 3343854 - Lsi01G003820.1 Lsi01g00382 653040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00382 621 SUPERFAMILY Protein kinase-like (PK-like) 270 568 IPR011009 -
Lsi01g00382 621 Gene3D - 77 180 IPR038408 -
Lsi01g00382 621 Gene3D Transferase(Phosphotransferase) domain 1 365 460 - -
Lsi01g00382 621 ProSiteProfiles Protein kinase domain profile. 289 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00382 621 SMART serkin_6 289 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00382 621 Pfam Salt stress response/antifungal 86 178 IPR002902 -
Lsi01g00382 621 Gene3D Phosphorylase Kinase; domain 1 255 364 - -
Lsi01g00382 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672|GO:0006468
Lsi01g00382 621 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 76 227 - -
Lsi01g00382 621 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 264 446 - -
Lsi01g00382 621 ProSiteProfiles Gnk2-homologous domain profile. 78 181 IPR002902 -
Lsi01g00382 621 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 510 594 - -
Lsi01g00382 621 MobiDBLite consensus disorder prediction 594 621 - -
Lsi01g00382 621 MobiDBLite consensus disorder prediction 598 612 - -
Lsi01g00382 621 ProSitePatterns Protein kinases ATP-binding region signature. 295 317 IPR017441 GO:0005524
Lsi01g00382 621 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 510 594 - -
Lsi01g00382 621 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 76 227 - -
Lsi01g00382 621 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 264 446 - -
Lsi01g00382 621 Pfam Protein kinase domain 290 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00382 Lsi-Chr1:3339191 Lsi01g00385 Lsi-Chr1:3351042 0 dispersed
Lsi01g00381 Lsi-Chr1:3337854 Lsi01g00382 Lsi-Chr1:3339191 1.05E-47 tandem
Lsi01g00382 Lsi-Chr1:3339191 Lsi01g00383 Lsi-Chr1:3344927 0 tandem
Lsi01g00382 Lsi-Chr1:3339191 Lsi02g00644 Lsi-Chr2:5766332 2.16E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83240 PF00069 Pkinase 2.80E-31 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00382 - - cmos:111453352 688.723