Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00383 ATGGCATTCTTTCTTCCTCTTGTTTTGTTTTTCTTTGCCAGAGTTTGGGCCATCCAGGCAGTATTTGTCTACCATTACTGCATGTATGATAGAGGGAACTTCACCAGCAACAGCACGTATAAGACCAACCTCGATCATGTCCTCTCCTCCATTGTCACTGCCAAAGACACTGGCAATGGCTTTTACAATTTTTCCTATGGTCAAAACTCAGACTCAGCTAATGCTATTGGCCTCTGCCGAGGCGATGTGAAGCCTGATTTATGTCGAAGTTGCCTCAATGACTCTATATATCTTCTCACACAGCAATGTCCTCAGCAGAAAGAAGCAATTGGGTGGTTTGATAACTGCATGCTGCGCTATTCAAGCCGTCCCATATTTGGTGCAATGGAAACTGGACCTGATTTCCTCATGTGGGCGACAATCAGTATAACAGAGAAAACTCTGTTCAGCCAGAAGTTAAAAACGTTGCTGGATGGCTTGAAAAACAATGCCTCTTCAGGTGGTTCTCTAAAGAAGTATGCAACTGGTAACATAGCTGCACACGGGCTATGGACAATATATGGGCTTTTGCAGTGCACACCTGACCTGTCTCAGCTACAATGTGATGAATGCTTAGAGTCAGCGTTACAAACAATCCCACCATGTTGTAGTGAAGGAATGAAAGTTTTTTTACCCAGCTGTCAAGCCAGATATGAAAGTTACCTCTTCTTTGAGCCTTCTGCTGATTCGCCACCACCACTGCCATTAGTATTTACTCCTTCAACTAGTACCACGTCTACAGAAGCTAGTGGTGATGATATTAACTCAATGGACTTCTTTCAATACGACTTTAAGATGATCAAAGACGCAACAGATGACTTTTCTACTGCCAATAAACTTGGACAAGGTGGATTTGGTATCGTTTATAAGGGTAAACTTCTCAATGGACAAGAAGTGGCTGTAAAAAGGCTAGCTCAAGGTTCTGAGCAGGGAGACCTTGAATTTAAGAATGAGGTTTTATTGGTTGCTAAGCTGCAGCACCGGAATCTGGTTCGACTTCTTGGCTTTTGTTTCGAGAGAAATGAAAGACTCCTGATCTACGAGTTGTTACCTAATTCAAGCCTAGATCGCTTCATATTTGATCCAATGCAGCGCCAATATTTGGACTGGCCAAGACGTTACAAAATTATAGTGGGCATCAGTCGTGGCCTCATGTATCTACATGAAGATTCTCGATTCAAAGTCATTCATCATGATCTTAAAGCTAGTAATATACTGCTAGATGCAGAACTAAATCCAAAAATTAATGATTTTGGAATGGCAAGATTGTGTTCGTTCAATCAATCCAATGGTGATACAAGTAAAATTAAAGGAACATATGGATATATGGCTCCAGAGTATGCATTGTATGGGCATTTCTCAGTAAAATCAGACGTGTTTAGTTTTGGTGTGCTTCTTCTAGAGATCGTGAGTGGCCAAAGGAACAGCAGCTTTCAAGATGGCGAAAATATAGAGCATCTTTTGAGCTATACATGGGAAAACTGGACGAAAGGAACGATTACAAATATCATAGACCCAATATTGGGTGGGACTTGCTTTGATGAAATCTTAAGATGTATTCATCTAGGGTTACTATGTGTTCAAGAAGATGCAGCTAGCAGACCAACCATGGCTTTAGTTGTTCTCATGCTGAATAGCAACTCCTTCGCTCTTCCTGTACCATCACGGCCTGGATTTTTGCTGCATAGTAAATCATCAAATATTGCACAGCATTTTAATTGCGCGGAAGGGTCGCAATTTAGCCAATCTGCGAGCATTTGTATTGAAGACGAATCATCAAATGATTCAAATCAGTTTAACTCATTTTCTTTAGACTTGGAATGA 1863 41.06 MAFFLPLVLFFFARVWAIQAVFVYHYCMYDRGNFTSNSTYKTNLDHVLSSIVTAKDTGNGFYNFSYGQNSDSANAIGLCRGDVKPDLCRSCLNDSIYLLTQQCPQQKEAIGWFDNCMLRYSSRPIFGAMETGPDFLMWATISITEKTLFSQKLKTLLDGLKNNASSGGSLKKYATGNIAAHGLWTIYGLLQCTPDLSQLQCDECLESALQTIPPCCSEGMKVFLPSCQARYESYLFFEPSADSPPPLPLVFTPSTSTTSTEASGDDINSMDFFQYDFKMIKDATDDFSTANKLGQGGFGIVYKGKLLNGQEVAVKRLAQGSEQGDLEFKNEVLLVAKLQHRNLVRLLGFCFERNERLLIYELLPNSSLDRFIFDPMQRQYLDWPRRYKIIVGISRGLMYLHEDSRFKVIHHDLKASNILLDAELNPKINDFGMARLCSFNQSNGDTSKIKGTYGYMAPEYALYGHFSVKSDVFSFGVLLLEIVSGQRNSSFQDGENIEHLLSYTWENWTKGTITNIIDPILGGTCFDEILRCIHLGLLCVQEDAASRPTMALVVLMLNSNSFALPVPSRPGFLLHSKSSNIAQHFNCAEGSQFSQSASICIEDESSNDSNQFNSFSLDLE 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3344927 3348061 - Lsi01G003830.1 Lsi01g00383 653041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00383 620 SUPERFAMILY Protein kinase-like (PK-like) 267 557 IPR011009 -
Lsi01g00383 620 Pfam Salt stress response/antifungal 144 234 IPR002902 -
Lsi01g00383 620 Pfam Salt stress response/antifungal 27 122 IPR002902 -
Lsi01g00383 620 ProSiteProfiles Protein kinase domain profile. 287 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00383 620 Gene3D Phosphorylase Kinase; domain 1 252 362 - -
Lsi01g00383 620 ProSiteProfiles Gnk2-homologous domain profile. 22 125 IPR002902 -
Lsi01g00383 620 SMART serkin_6 287 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00383 620 ProSitePatterns Protein kinases ATP-binding region signature. 293 315 IPR017441 GO:0005524
Lsi01g00383 620 ProSiteProfiles Gnk2-homologous domain profile. 131 236 IPR002902 -
Lsi01g00383 620 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 265 582 - -
Lsi01g00383 620 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 243 - -
Lsi01g00383 620 CDD STKc_IRAK 293 558 - -
Lsi01g00383 620 Gene3D - 19 124 IPR038408 -
Lsi01g00383 620 Gene3D - 135 236 IPR038408 -
Lsi01g00383 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 408 420 IPR008271 GO:0004672|GO:0006468
Lsi01g00383 620 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 10 ISOFORM X1 265 582 - -
Lsi01g00383 620 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 10 ISOFORM X1 3 243 - -
Lsi01g00383 620 Pfam Protein tyrosine and serine/threonine kinase 289 493 IPR001245 GO:0004672|GO:0006468
Lsi01g00383 620 Gene3D Transferase(Phosphotransferase) domain 1 363 563 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00381 Lsi-Chr1:3337854 Lsi01g00383 Lsi-Chr1:3344927 5.11E-76 dispersed
Lsi01g00383 Lsi-Chr1:3344927 Lsi01g00385 Lsi-Chr1:3351042 0 dispersed
Lsi02g00648 Lsi-Chr2:5801730 Lsi01g00383 Lsi-Chr1:3344927 0 dispersed
Lsi02g00655 Lsi-Chr2:5852260 Lsi01g00383 Lsi-Chr1:3344927 0 dispersed
Lsi01g00382 Lsi-Chr1:3339191 Lsi01g00383 Lsi-Chr1:3344927 0 tandem
Lsi01g00383 Lsi-Chr1:3344927 Lsi11g01479 Lsi-Chr11:23326617 2.25E-34 wgd
Lsi01g00383 Lsi-Chr1:3344927 Lsi02g00640 Lsi-Chr2:5724632 4.83E-169 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83241 PF07714 PK_Tyr_Ser-Thr 1.10E-43 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00383 - - csv:105436038 998.423