Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00384 ATGATTCATTTCCTCATTCAAACATCTTCTTCTTTGCCTTTAACTCTACTACTTCTGATTTCAATCTCTGGATTCATAGTCCCTTGTTGTAGCCAACGATATTTACACTGCTCAGGATCCAATACGGCTCACCCCAATCTAAATTCTGACATTGATTTCCTATTGAATTCCTTGATATCTCAAGCTTCCTCTCGCACTTTCTACACTGAGACCTCTAATGGAATCCATGGCCTCTTCCTCTGCCGAGGGGATCTTCCCAACGAGGCCTGTCGTACCTGCATTGAAGGAGCAAGTCAACAAATCAAGGTCGACTGTGCATCACAAACAAATGGTACCATAGCCTTTGATGAATGCATGTTGAGATACTCAGTTGTCAACTTCTTTGGAGTCCTGGAGACAGCTCCAAGAATACTACTATATAATAGTCTGAACCAATCTACTTTTGAAGACCGGGATTTCATCGATCTTGCATTAGTGTCTAGTTTAGTAAGAGATGCTACAAATGCAGATTTGATGTTCAAGGAAGGTGAGGTAAATGTGCTGGGGGTGGCTCAGAGATTTGGATTGGCACAGTGTACAAGAGATATCATCAAGCGTGATTGTGAGGTCTGTTTGACAAATTTGGTGGATTATGCAAAGGGATGTTGCCTAAGGCAAAGAGGGTGGCGAGTTTTAGCTCCCAATTGTAATTTAAGAGTTGAGGCCTTTCGTTTTTATGGAATACCAGGACCTCCATCCTTGCCACTTGATGAAGAAGGAGGGAGCAGAACAAGGATCATAGTCATCAGCATATCAACAGTTGCAGCAACGGCAATTCTGCTAGGCCTATTGTATGGCTCATTTTTATGGAGAAACAAAAGACAGGAGAGGGATAGAAGTGAAGAGCTTCCTTTGCGAAATCGGGCAGATCCACAACCAGTTTACTCACTGAGGCAACATTTTGATGCAACAAATAATGACAATGATGGAGATATGCATTACTTCAACTTTAGTGCTCTAAAGGCTGCAACAGATGACTTTTCAGATGTTCATAAACTTGGAGAAGGGGGGTTTGGTCCAGTTTACAAGGGAAAGCTGATGGGTGGTGAGGAAGTAGCAGTGAAAAGACTATCAACAAAATCAAGTCAAGGACATGAAGAGTTCAAGAATGAAGCAAAGGTCATTTGGAAGCTTCAACATAAGAATCTGGTCAGGCTCTTGGGATGTTGTGTTGAAGGAGAAGAAAAACTTCTAGTTTATGAGTACATGGCAAATACTAGTCTTGATGCTTTCTTGTTTGATCCATTGAAGTGCAAACAACTTGATTGGCTCAAGCGCGAAAACATTGTCAATGGGATTGCAAGAGGAATTCTCTACCTCCATGAAGATTCTCGACTCAAAATCATCCATAGAGATTTAAAAGCAAGCAATGTACTGTTAGATGAGGAGATGAATCCAAAAATATCAGACTTTGGAACTGCTAGGATATTTGGAGGCAAGCAAATTGATGCCAGCACCAATAGAATAGTTGGAACATATGGTTATATGGCACCAGAGTATGCTATGGAAGGAGTTTTCTCAGTTAAGTCCGACGTATATAGTTTTGGAGTTCTTATGCTAGAAGTGATGAGTGGGAGAAAAAACATTGGTTTTCTGAACATGGACAGAGCGCAGAACCTTCTGTCATATGCGTGGGAGCTATGGAGTGAAGGTAGAGCAGAAGAAATGATAGACAAGAACTTGGCTGGAGATTGTCCTGAGAGTGAAGCTGTAAAATGGATCCACATAGGGTTACTGTGTGTGCAAGAAGATCCTAACATCAGACCCACCATGTCAGTGGTTGTTCTAATGCTTGGAAGCCAATCGATTCACCTTCCTCAGCCATCAAATCCTCCATTTCTTACAGGTAGAGGGTCCCTAAGTAGATATCAATATTCAACAACTGAAACAGGGACAGGGTTACACACTACAGACCAGTCGTCTACTAGTGCTTCTATCTAG 1980 41.77 MIHFLIQTSSSLPLTLLLLISISGFIVPCCSQRYLHCSGSNTAHPNLNSDIDFLLNSLISQASSRTFYTETSNGIHGLFLCRGDLPNEACRTCIEGASQQIKVDCASQTNGTIAFDECMLRYSVVNFFGVLETAPRILLYNSLNQSTFEDRDFIDLALVSSLVRDATNADLMFKEGEVNVLGVAQRFGLAQCTRDIIKRDCEVCLTNLVDYAKGCCLRQRGWRVLAPNCNLRVEAFRFYGIPGPPSLPLDEEGGSRTRIIVISISTVAATAILLGLLYGSFLWRNKRQERDRSEELPLRNRADPQPVYSLRQHFDATNNDNDGDMHYFNFSALKAATDDFSDVHKLGEGGFGPVYKGKLMGGEEVAVKRLSTKSSQGHEEFKNEAKVIWKLQHKNLVRLLGCCVEGEEKLLVYEYMANTSLDAFLFDPLKCKQLDWLKRENIVNGIARGILYLHEDSRLKIIHRDLKASNVLLDEEMNPKISDFGTARIFGGKQIDASTNRIVGTYGYMAPEYAMEGVFSVKSDVYSFGVLMLEVMSGRKNIGFLNMDRAQNLLSYAWELWSEGRAEEMIDKNLAGDCPESEAVKWIHIGLLCVQEDPNIRPTMSVVVLMLGSQSIHLPQPSNPPFLTGRGSLSRYQYSTTETGTGLHTTDQSSTSASI 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3350839 3353605 + Lsi01G003840.1 Lsi01g00384 653042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00384 659 Gene3D Transferase(Phosphotransferase) domain 1 416 618 - -
Lsi01g00384 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Lsi01g00384 659 MobiDBLite consensus disorder prediction 640 659 - -
Lsi01g00384 659 SMART serkin_6 340 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00384 659 Pfam Salt stress response/antifungal 173 234 IPR002902 -
Lsi01g00384 659 Pfam Salt stress response/antifungal 40 123 IPR002902 -
Lsi01g00384 659 ProSiteProfiles Gnk2-homologous domain profile. 29 127 IPR002902 -
Lsi01g00384 659 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 10 ISOFORM X1 32 643 - -
Lsi01g00384 659 SUPERFAMILY Protein kinase-like (PK-like) 322 638 IPR011009 -
Lsi01g00384 659 Gene3D Phosphorylase Kinase; domain 1 314 415 - -
Lsi01g00384 659 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 32 643 - -
Lsi01g00384 659 Pfam Protein tyrosine and serine/threonine kinase 344 608 IPR001245 GO:0004672|GO:0006468
Lsi01g00384 659 Gene3D - 138 238 IPR038408 -
Lsi01g00384 659 Gene3D - 30 127 IPR038408 -
Lsi01g00384 659 ProSiteProfiles Protein kinase domain profile. 340 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00384 659 ProSiteProfiles Gnk2-homologous domain profile. 133 238 IPR002902 -
Lsi01g00384 659 CDD STKc_IRAK 346 611 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00384 Lsi-Chr1:3350839 Lsi01g00386 Lsi-Chr1:3360457 0 dispersed
Lsi01g00384 Lsi-Chr1:3350839 Lsi01g00385 Lsi-Chr1:3351042 5.16E-141 tandem
Lsi02g00739 Lsi-Chr2:6760443 Lsi01g00384 Lsi-Chr1:3350839 1.12E-76 transposed
Lsi04g00078 Lsi-Chr4:954915 Lsi01g00384 Lsi-Chr1:3350839 3.07E-29 transposed
Lsi01g00384 Lsi-Chr1:3350839 Lsi10g00850 Lsi-Chr10:12508401 7.19E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83242 PF07714 PK_Tyr_Ser-Thr 4.00E-50 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00384 - - cmo:103484582 1165.21