Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00385 ATGTATGATAGAGGGAACTTCACCAGCAACAGCACGTATAAGACCAACCTCGATCATGTCCTCTCCTCCATTGTCACTGCCAAAGACACTGGCAATGGCTTTTACAATTTTTCCTATGGTCAAAACTCAGACTCAGCTAATGCTATTGGCCTCTGCCGAGGCGATGTGAAGCCTGATTTATGTCGAAGTTGCCTCAATGACTCTATATATCTTCTCACACAGCAATGTCCTCAGCAGAAAGAAGCAATTGGGTGGTTTGATAACTGCATGCTGCGCTATTCAAGCCGTCCCATATTTGGTGCAATGGAAACTGGACCTGATTTCCTCATGTGGGCGACAATCAGTATAACAGAGAAAACTCTGTTCAGCCAGAAGTTAAAAACGTTGCTGGATGGCTTGAAAAACAATGCCTCTTCAGGTGGTTCTCTAAAGAAGTATGCAACTGGTAACATAGCTGCACACGGGCTATGGACAATATATGGGCTTTTGCAGTGCACACCTGACCTTCAGCGTTACAAACAATCCCACCATGTTGTATTTTTTTTACCCAGCTGTCAAGCCAGATATGAAAGTTACCTCTTCTTTGAGCCTTCTGCTGATTCGCCACCACCACTGCCATTAGTATTTACTCCTTCAACTAGTACCACGTCTACAGAAGGAAAGAAGTTCAGAATACGAACTGTCATTGTGATACTTCTTCCATTTGTGGCACTTTCGGTATTATTGACCATCGGCACTTATATCTTTTTGAGATCCAGAAAGTTGAGGGACTTGAGAGTAAGATTACTTTATTTTCGTCAGAGCCTAATTGGTGATGATATTAACTCAATGGACTTCTTTCAATACGACTTTAAGATGATCAAAGACGCAACAGATGACTTTTCTACTGCCAATAAACTTGGACAAGGTGGATTTGGTATCGTTTATAAGGGTAAACTTCTCAATGGACAAGAAGTGGCTGTAAAAAGGCTAGCTCAAGGTTCTGAGCAGGGAGACCTTGAATTTAAGAATGAGGTTTTATTGGTTGCTAAGCTGCAGCACCGGAATCTGGTTCGACTTCTTGGCTTTTGTTTCGAGAGAAATGAAAGACTCCTGATCTACGAGTTGTTACCTAATTCAAGCCTAGATCGCTTCATATTTGATCCAATGCAGCGCCAATATTTGGACTGGCCAAGACGTTACAAAATTATAGTGGGCATCAGTCGTGGCCTCATGTATCTACATGAAGATTCTCGATTCAAAGTCATTCATCATGATCTTAAAGCTAGTAATATACTGCTAGATGCAGAACTAAATCCAAAAATTAATGATTTTGGAATGGCAAGATTGTGTTCGTTCAATCAATCCAATGGTGATACAACTTCTCTTAGGGGACTGAGACAAATATTGAACTTAAAGTGTTTTTTTATTTCAAGTGGATATATGGCTCCAGAGTATGCATTGTATGGGCATTTCTCAGTAAAATCAGACGTGTTTAGTTTTGGTGTGCTTCTTCTAGAGATCGTGAGTGGCCAAAGGAACAGCAGCTTTCAAGATGGCGAAAATATAGAGCATCTTTTGAGCTATACATGGGAAAACTGGACGAAAGGAACGATTACAAATATCATAGACCCAATATTGGGTGGGACTTGCTTTGATGAAATCTTAAGATGTATTCATCTAGGGTTACTATGTGTTCAAGAAGATGCAGCTAGCAGACCAACCATGGCTTTAGTTGTTCTCATGCTGAATAGCAACTCCTTCGCTCTTCCTGTACCATCACGGCCTGGATTTTTGCTGCATAGTAAATCATCAAATATTGCACAGCATTTTAATTGCGCGGAAGGGTCGCAATTTAGCCAATCTGCGAGCATTTGTATTGAAGACGAATCATCAAATGATTCAAATCATATTCTTGGAGCTGTCTCCAGGACTCCAAAGAAGTTGACAACTGAGTATCTCAACATGCATTCATCAAAGGCTATGGTACGACAGGCCTCGTTGGGAAGATCCCCTCGGCAGAGGAAGAGGCCATGGATTCCATTAGAGGTCTCAGTG 2037 41.38 MYDRGNFTSNSTYKTNLDHVLSSIVTAKDTGNGFYNFSYGQNSDSANAIGLCRGDVKPDLCRSCLNDSIYLLTQQCPQQKEAIGWFDNCMLRYSSRPIFGAMETGPDFLMWATISITEKTLFSQKLKTLLDGLKNNASSGGSLKKYATGNIAAHGLWTIYGLLQCTPDLQRYKQSHHVVFFLPSCQARYESYLFFEPSADSPPPLPLVFTPSTSTTSTEGKKFRIRTVIVILLPFVALSVLLTIGTYIFLRSRKLRDLRVRLLYFRQSLIGDDINSMDFFQYDFKMIKDATDDFSTANKLGQGGFGIVYKGKLLNGQEVAVKRLAQGSEQGDLEFKNEVLLVAKLQHRNLVRLLGFCFERNERLLIYELLPNSSLDRFIFDPMQRQYLDWPRRYKIIVGISRGLMYLHEDSRFKVIHHDLKASNILLDAELNPKINDFGMARLCSFNQSNGDTTSLRGLRQILNLKCFFISSGYMAPEYALYGHFSVKSDVFSFGVLLLEIVSGQRNSSFQDGENIEHLLSYTWENWTKGTITNIIDPILGGTCFDEILRCIHLGLLCVQEDAASRPTMALVVLMLNSNSFALPVPSRPGFLLHSKSSNIAQHFNCAEGSQFSQSASICIEDESSNDSNHILGAVSRTPKKLTTEYLNMHSSKAMVRQASLGRSPRQRKRPWIPLEVSV 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3351042 3357243 - Lsi01G003850.1 Lsi01g00385 653043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00385 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Lsi01g00385 679 Pfam Protein kinase domain 295 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00385 679 ProSitePatterns Protein kinases ATP-binding region signature. 300 322 IPR017441 GO:0005524
Lsi01g00385 679 SMART serkin_6 294 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00385 679 ProSiteProfiles Gnk2-homologous domain profile. 1 98 IPR002902 -
Lsi01g00385 679 CDD STKc_IRAK 300 577 - -
Lsi01g00385 679 SUPERFAMILY Protein kinase-like (PK-like) 279 604 IPR011009 -
Lsi01g00385 679 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 4 604 - -
Lsi01g00385 679 Gene3D Transferase(Phosphotransferase) domain 1 370 582 - -
Lsi01g00385 679 Pfam Salt stress response/antifungal 5 95 IPR002902 -
Lsi01g00385 679 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 10 ISOFORM X1 4 604 - -
Lsi01g00385 679 Gene3D - 1 97 IPR038408 -
Lsi01g00385 679 Gene3D - 108 174 IPR038408 -
Lsi01g00385 679 ProSiteProfiles Protein kinase domain profile. 294 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00385 679 Gene3D Phosphorylase Kinase; domain 1 271 369 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00382 Lsi-Chr1:3339191 Lsi01g00385 Lsi-Chr1:3351042 0 dispersed
Lsi01g00383 Lsi-Chr1:3344927 Lsi01g00385 Lsi-Chr1:3351042 0 dispersed
Lsi01g00385 Lsi-Chr1:3351042 Lsi02g00648 Lsi-Chr2:5801730 0 dispersed
Lsi01g00384 Lsi-Chr1:3350839 Lsi01g00385 Lsi-Chr1:3351042 5.16E-141 tandem
Lsi01g00385 Lsi-Chr1:3351042 Lsi01g00386 Lsi-Chr1:3360457 4.66E-141 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83243 PF00069 Pkinase 2.40E-40 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00385 - - csv:105436038 967.607