Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00386 TCCAATACGGCTCACCCCAATCTAAATTCTGACATTGATTTCCTATTGAATTCCTTGATATCTCAAGCTTCCTCTCGCACTTTCTACACTGAGACCTCTAATGGAATCCATGGCCTCTTCCTCTGCCGAGGGGATCTTCCCAACGAGGCCTGTCGTACCTGCATTGAAGGAGCAAGTCAACAAATCAAGGTCGACTGTGCATCACAAACAAATGGTACCATAGCCTTTGATGAATGCATGTTGAGATACTCAGTTGTCAACTTCTTTGGAGTCCTGGAGACAGCTCCAAGAATACTACTATATAATAGTCTGAACCAATCTACTTTTGAAGACCGGGATTTCATCGATCTTGCATTAGTGTCTAGTTTAGTAAGAGATGCTACAAATGCAGATTTGATGTTCAAGGAAGGTGAGGTAAATGTGCTGGGGGTGGCTCAGAGATTTGGATTGGCACAGTGTACAAGAGATATCATCAAGCGTGATTGTGAGGTCTGTTTGACAAATTTGGTGGATTATGCAAAGGGATGTTGCCTAAGGCAAAGAGGGTGGCGAGTTTTAGCTCCCAATTGTAATTTAAGAGTTGAGGCCTTTCGTTTTTATGGAATACCAGGACCTCCATCCTTGCCACTTGATGAAGAAGGAGGGAGCAGAACAAGGATCATAGTCATCAGCATATCAACAGTTGCAGCAACGGCAATTCTGCTAGGCCTATTGTATGGCTCATTTTTATGGAGAAACAAAAGACAGGAGAGGGATAGAAGTGAAGAGCTTCCTTTGCGAAATCGGGCAGATCCACAACCAGTTTACTCACTGAGGCAACATTTTGATGCAACAAATAATGACAATGATGGAGATATGCATTACTTCAACTTTAGTGCTCTAAAGGCTGCAACAGATGACTTTTCAGATGTTCATAAACTTGGAGAAGGGGGGTTTGGTCCAGTTTACAAGGGAAAGCTGATGGGTGGTGAGGAAGTAGCAGTGAAAAGACTATCAACAAAATCAAGTCAAGGACATGAAGAGTTCAAGAATGAAGCAAAGGTCATTTGGAAGCTTCAACATAAGAATCTGGTCAGGCTCTTGGGATGTTGTGTTGAAGGAGAAGAAAAACTTCTAGTTTATGAGTACATGGCAAATACTAGTCTTGATGCTTTCTTGTTTGATCCATTGAAGTGCAAACAACTTGATTGGCTCAAGCGCGAAAACATTGTCAATGGGATTGCAAGAGGAATTCTCTACCTCCATGAAGATTCTCGACTCAAAATCATCCATAGAGATTTAAAAGCAAGCAATGTACTGTTAGATGAGGAGATGAATCCAAAAATATCAGACTTTGGAACTGCTAGGATATTTGGAGGCAAGCAAATTGATGCCAGCACCAATAGAATAGTTGGAACATATGGTTATATGGCACCAGAGTATGCTATGGAAGGAGTTTTCTCAGTTAAGTCCGACGTATATAGTTTTGGAGTTCTTATGCTAGAAGTGATGAGTGGGAGAAAAAACATTGGTTTTCTGAACATGGACAGAGCGCAGAACCTTCTGTCATATGCGTGGGAGCTATGGAGTGAAGGTAGAGCAGAAGAAATGATAGACAAGAACTTGGCTGGAGATTGTCCTGAGAGTGAAGCTGTAAAATGGATCCACATAGGGTTACTGTGTGTGCAAGAAGATCCTAACATCAGACCCACCATGTCAGTGGTTGTTCTAATGCTTGGAAGCCAATCGATTCACCTTCCTCAGCCATCAAATCCTCCATTTCTTACAGGTAGAGGGTCCCTAAGTAGATATCAATATTCAACAACTGAAACAGGGACAGGGTTACACACTACAGACCAGTCGTCTACTAGTGCTTCTATCTAG 1863 42.08 SNTAHPNLNSDIDFLLNSLISQASSRTFYTETSNGIHGLFLCRGDLPNEACRTCIEGASQQIKVDCASQTNGTIAFDECMLRYSVVNFFGVLETAPRILLYNSLNQSTFEDRDFIDLALVSSLVRDATNADLMFKEGEVNVLGVAQRFGLAQCTRDIIKRDCEVCLTNLVDYAKGCCLRQRGWRVLAPNCNLRVEAFRFYGIPGPPSLPLDEEGGSRTRIIVISISTVAATAILLGLLYGSFLWRNKRQERDRSEELPLRNRADPQPVYSLRQHFDATNNDNDGDMHYFNFSALKAATDDFSDVHKLGEGGFGPVYKGKLMGGEEVAVKRLSTKSSQGHEEFKNEAKVIWKLQHKNLVRLLGCCVEGEEKLLVYEYMANTSLDAFLFDPLKCKQLDWLKRENIVNGIARGILYLHEDSRLKIIHRDLKASNVLLDEEMNPKISDFGTARIFGGKQIDASTNRIVGTYGYMAPEYAMEGVFSVKSDVYSFGVLMLEVMSGRKNIGFLNMDRAQNLLSYAWELWSEGRAEEMIDKNLAGDCPESEAVKWIHIGLLCVQEDPNIRPTMSVVVLMLGSQSIHLPQPSNPPFLTGRGSLSRYQYSTTETGTGLHTTDQSSTSASI 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3360457 3363106 + Lsi01G003860.1 Lsi01g00386 653044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00386 620 Pfam Salt stress response/antifungal 10 84 IPR002902 -
Lsi01g00386 620 Pfam Salt stress response/antifungal 134 195 IPR002902 -
Lsi01g00386 620 ProSiteProfiles Gnk2-homologous domain profile. 94 199 IPR002902 -
Lsi01g00386 620 Gene3D Transferase(Phosphotransferase) domain 1 377 579 - -
Lsi01g00386 620 Pfam Protein tyrosine and serine/threonine kinase 305 569 IPR001245 GO:0004672|GO:0006468
Lsi01g00386 620 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 11 604 - -
Lsi01g00386 620 ProSiteProfiles Protein kinase domain profile. 301 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00386 620 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 10 ISOFORM X1 11 604 - -
Lsi01g00386 620 CDD STKc_IRAK 307 572 - -
Lsi01g00386 620 MobiDBLite consensus disorder prediction 601 620 - -
Lsi01g00386 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
Lsi01g00386 620 ProSiteProfiles Gnk2-homologous domain profile. 1 88 IPR002902 -
Lsi01g00386 620 Gene3D - 99 199 IPR038408 -
Lsi01g00386 620 Gene3D - 1 88 IPR038408 -
Lsi01g00386 620 SMART serkin_6 301 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00386 620 SUPERFAMILY Protein kinase-like (PK-like) 283 599 IPR011009 -
Lsi01g00386 620 Gene3D Phosphorylase Kinase; domain 1 275 376 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00384 Lsi-Chr1:3350839 Lsi01g00386 Lsi-Chr1:3360457 0 dispersed
Lsi01g00386 Lsi-Chr1:3360457 Lsi02g00644 Lsi-Chr2:5766332 3.77E-159 dispersed
Lsi01g00385 Lsi-Chr1:3351042 Lsi01g00386 Lsi-Chr1:3360457 4.66E-141 tandem
Lsi01g00386 Lsi-Chr1:3360457 Lsi01g00387 Lsi-Chr1:3364300 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83244 PF07714 PK_Tyr_Ser-Thr 3.50E-50 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00386 - - cmo:103484582 1150.19