Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00390 ATGGATCCAGACTTCTTTTATCAAATCTGTTCAGACAAAGGCAACTACACCAACAACAGCCCTTTCAAGAAAAATCTCGACAACGTTCTTGCTTCAATCTCCTCCAATTCCAACACCGACAGCCGCCAGGTCGACTATGGTTTCTATAATGCGACCTCCGGTGAAGATCCCGACACAGCCAACGCTAAGGTTCTTTGTCGTAAAGGCGTTCCTTTGGAACAATGCAGAAGTTGCGTGAATGACTCAGTTCGTAGAATTACACAAAACTGTCCAACCCAGAAGGAAGGTGCAGGATGGTACCCCGATTGCCAAATTCTTTACTCAAACAACTCTATTCATGGTGAGACAGGGTTGCCTGCGAATCGAATTTTATACAACACCGGTACAGCCCCAGACGCGAACGGTTTCAATGAGGAACGGAGAGAGTTACTGGATCGACTGCGAGAGGAGGCTGCATCAGGGACTTCGATTCGTAAGTCTGCAAGCGGAGATGTGAAGCTTAAAAGTCCGAATATGTATACAATATATGGGCTTGTTGATTGTTTTCCCGACATGTCGTATTTCTATTGTGATGTCTGCCTCAGTCGGCTTCAAAGTGAGCTTCCTAATGGCAGCATAGGGGCAAGATTGCTTGCTGCTAGTTGTCAAATCAATTATGAAATCCACCCTCTGTATGAGTTACTTCTCTCTCCGCCTCCACCTTCTCCGCCATCAGCTTCTAATCTTCCCCCTCCATCTTTTTCGCCCACACAAGGAAATAATGGCAATACTGCTAGAACTGTTGTAATTGTTGTGGTATCCATCGTTTCAGCCATCATTCTCATTGTTGGTATTTGCATGATTCTGAGATGGAGAAGCAAAAAGCAGAAAATACCATTAAGAAATTTTGAAAATGTTGCTCTTGAAGATGTTAGTGATGAAATTAGCAGTGCGGAGACAATTCAATTTAATTTTGATGCAATTAAAGATGCAACAAATGACTTCTCAAGTGAAAACAAGTTAGGACAGGGCGGGTTTGGAGCTGTTTACAAGGGTCAGCTGCCTAATGGACAATATATTGCAGTGAAGAGGCTCGCACATAATTCACAACAAGGAGATCTTGAATTCAAAAATGAAGTACTTTTGGTAGTCAAGCTTCAACACCGAAACTTGGTTAGACTATTGGGATTCTGCTTGCAAGGAAGCGAAAGACTTCTTATATATGAGTTTGTACCAAATGGCAGCCTTGACCACTTCATATTTGATATTGAGAAGCGGACACAATTAGATTGGGAAAGACGATACAAAATCATAAATGGCACTGCACGAGGACTTCTTTACCTTCATGAAGATTCTCGCTTTCGAATTATTCATCGTGATCTCAAAGCTAGCAATATTTTGTTGGATGAAGAAATGAATCCAAAGATTGCCGATTTTGGTCTAGCAAGATTGTTCGAAGTAGATGAGACTCAAGGCAATACAAGTAGAATTGTGGGAACTTATGGCTATATGGCTCCTGAGTATATAGCACATGGACAATTTTCGATAAAATCTGATGTCTTTAGCTTTGGTGTTTTGGTTCTTGAAATTATGAGTGGTCAGAAAAACAATAGTTTTCGCAATGGAGAAAATATCGAAGATCTTACTAGCTTTACTTGGAATAATTGGATGGCGGGAACAGTTACAAATGTCATAGATTCAATACTTAGTGTTGGTTCAAGGATTGAAATGATAAGATGCATTCACATTGGACTATTGTGTGTTCAAGAAAATGTAGCAAACCGACCAACAATGGCATCGGTAGTTATGATGTTAAGTAGTTCTTCTCTCACTCTTCCTATACCCTCTAAACCTGCATTCTTCATGCATAGTATCACCAATGGATCCAACACAATGTTAGTATTGGATGTGACTAATCATTCTAAAAGCACATCTCTTCAATATTCGGAGAATGACAACGTTTCAATTACAGAGCTTCATCCTCGTTAA 1968 40.55 MDPDFFYQICSDKGNYTNNSPFKKNLDNVLASISSNSNTDSRQVDYGFYNATSGEDPDTANAKVLCRKGVPLEQCRSCVNDSVRRITQNCPTQKEGAGWYPDCQILYSNNSIHGETGLPANRILYNTGTAPDANGFNEERRELLDRLREEAASGTSIRKSASGDVKLKSPNMYTIYGLVDCFPDMSYFYCDVCLSRLQSELPNGSIGARLLAASCQINYEIHPLYELLLSPPPPSPPSASNLPPPSFSPTQGNNGNTARTVVIVVVSIVSAIILIVGICMILRWRSKKQKIPLRNFENVALEDVSDEISSAETIQFNFDAIKDATNDFSSENKLGQGGFGAVYKGQLPNGQYIAVKRLAHNSQQGDLEFKNEVLLVVKLQHRNLVRLLGFCLQGSERLLIYEFVPNGSLDHFIFDIEKRTQLDWERRYKIINGTARGLLYLHEDSRFRIIHRDLKASNILLDEEMNPKIADFGLARLFEVDETQGNTSRIVGTYGYMAPEYIAHGQFSIKSDVFSFGVLVLEIMSGQKNNSFRNGENIEDLTSFTWNNWMAGTVTNVIDSILSVGSRIEMIRCIHIGLLCVQENVANRPTMASVVMMLSSSSLTLPIPSKPAFFMHSITNGSNTMLVLDVTNHSKSTSLQYSENDNVSITELHPR 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3374309 3376948 - Lsi01G003900.1 Lsi01g00390 653048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00390 655 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 7 622 - -
Lsi01g00390 655 ProSiteProfiles Gnk2-homologous domain profile. 4 112 IPR002902 -
Lsi01g00390 655 MobiDBLite consensus disorder prediction 233 253 - -
Lsi01g00390 655 ProSiteProfiles Protein kinase domain profile. 328 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00390 655 Pfam Protein tyrosine and serine/threonine kinase 331 597 IPR001245 GO:0004672|GO:0006468
Lsi01g00390 655 ProSiteProfiles Gnk2-homologous domain profile. 118 224 IPR002902 -
Lsi01g00390 655 SMART serkin_6 328 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00390 655 SUPERFAMILY Protein kinase-like (PK-like) 316 639 IPR011009 -
Lsi01g00390 655 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 7 622 - -
Lsi01g00390 655 Gene3D - 2 111 IPR038408 -
Lsi01g00390 655 Gene3D - 120 223 IPR038408 -
Lsi01g00390 655 Pfam Salt stress response/antifungal 131 220 IPR002902 -
Lsi01g00390 655 Pfam Salt stress response/antifungal 10 109 IPR002902 -
Lsi01g00390 655 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Lsi01g00390 655 CDD STKc_IRAK 334 591 - -
Lsi01g00390 655 Gene3D Transferase(Phosphotransferase) domain 1 404 604 - -
Lsi01g00390 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
Lsi01g00390 655 Gene3D Phosphorylase Kinase; domain 1 294 403 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00390 Lsi-Chr1:3374309 Lsi01g00396 Lsi-Chr1:3401529 0 dispersed
Lsi01g00388 Lsi-Chr1:3368912 Lsi01g00390 Lsi-Chr1:3374309 0 proximal
Lsi01g00389 Lsi-Chr1:3371229 Lsi01g00390 Lsi-Chr1:3374309 7.41E-47 tandem
Lsi01g00390 Lsi-Chr1:3374309 Lsi01g00391 Lsi-Chr1:3378840 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83247 PF07714 PK_Tyr_Ser-Thr 1.70E-48 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00390 - - cmo:103484586 1028.47