Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00391 ATGGGAAATTATTTTCAAAGAATCAATTGTGTAAGAAAATATAATTCTAATAACGAAAATAAAAATCTCCAGCTAAAAACGCCATTCTTCTTGGCCTTCTTCATTCTCGCAGTCCCACACTTGATATTTCCCACAACTTCTCAGCCAGCCTTTTTATATTACACCTGCTCTGCCAAAGCCAACTACACCGCCGACAGCCCTTTCAACATAAACCTGGACAACGTACTACGCTCTATTTCTTCCAACACCCAAATCGATTACGGTTTCTATAACGCCACTTCCGGCGAAGATCCCGACCGAGCCACGGCTTTGGCTCTTTGCCGTGGAGGCGTTTCATTGGAACAATGTAGAAGCTGTGTGAACAACTCAACGCTCAGGATTACTCAAGATTGTCCAAACCAGAAAGAGGCAGAGGGATGGTACCAAGATTGTCAAATTCGTTACTCAAACAACTCAATTTACGGCGTCGGAGACAGCACTACGCAGATATTCTTGTACAACACTCAAAAAGCAGAAGACCCAGATGAGTTCAATGAGGCGTTGAGGAGTTTGCTTGATCGGCTGCGAATTGAGGCTGCGTCAGGGAGTTCTATTCGAAAGTGTTCTTGGGGAGACAAGAAGGTTCGGAGTCCAAGCATGGATACCATATATGGATTGGTTGATTGTTTTCCTGATTTGTCTTACTTGGACTGTTTTAACTGCCTCAGTATTCTTCAAACTTCTCTTCCTATTTGTTGCAACGCCAGCATAGGAGCCAGATTACTTGCAGTTAGTTGTGAACTCAATTATGAGATCCGCCCCATCTATGCATCACTTTTGTCTCCGCCGCCGCCGCCGCCTCCTCCTCCTCTTCCTTCTCCTCCACCTCCGTCATCACCCCCACCGTCGTCTTCGCCTCCAAGACCCGGAAATAGTGGCAGTACTGATAGAAGTAGAAGTGGAAGTGGAAGTGTTGTAATCGTTATGGTGGCCATCGTTTCCGCTGTCATTCTTCTTCTTGCCATTTTCATCATTTTGATATTGAGGAAGCGAAAGCACAAAAGACCATTAGATGGGCAGTTTTGGTTTGATTGTGAAATTTTTAAAAATAATAATAACCTATGGTTAGGTGTATATCTTGAACACGCCACCGATGAAATTAGCACATTAAAATCGCAACAAATGACTTCGCAAGTGAAAACAAGCTCGGACAGGGTGGATTTGGGAGCTGTTTATAAGGGTAAGCTACGTAATGGACGACATATAGCTGTGAAGAGGCTTGCGAATAATTCACAACAAGGGGATGTTGAATTCAAAAATGAAGTCCTTTTGATGCTCAAGCTTCAACATCGAAACTTGGTTAGACTATTGGGATTCTGTTTGCAAGGAAGCGAAAGGCTTCTCATATATGAGTTTGTACCAAATGGCAGCCTTGACCACTTTATATTTGATATTGCAAAGCGGACATTATTAGAATGGGAAACGCGTTACAAAATTATAAATGGCATTGCGCGAGGACTTCTTTATCTTCACGAAGATTCTCGCCATCGAATCATACATCGTGATCTCAAAGCTAGCAATATTTTGTTGGATGTAGAAATGAGTCCAAAGATTTCAGATTTTGGAATGGCAAGGTTGTTCGAAGTAGATCAGACTCAAGGCAATACAAATAGAATTGTGGGAACTTATGGCTATATGGCTCCAGAGTATGTAAAGCATGGAGTGTTTTCGGTAAAATCAGATGTTTTTAGCTTTGGTATTTTGGTTCTTGAGATTTTGAGTGGTAAAAAAAATAATAATTTTCACAACAGAGAACACTCTGAAGATCTCTCAAGCTTTGCATGGACAAATTGGAGGGCAGGAACAACTACAAATGTCATTGATTCCACCCTCAACATTGGTTCAAGGATTGAGATGCTAAGATGCATTCATATTGGACTATTGTGTATTCAAGAAAATATAAAAAATCGACCAACAATGACTTCAGTAGTTATGATGCTAAGTAGTTCTTCTCTCACTCTCCCTATACCTTCTAAACCAGCATTCTTCCTACATAGTACTACCGATGGATCTAACAAACTATTGAAGTCAGATAGAAATAGTTGTGGAAGTCCATCTGTTCAACTTTCAAAGAATGACATTTCAATTACGGAGATCCATCCTCGTTAG 2148 41.11 MGNYFQRINCVRKYNSNNENKNLQLKTPFFLAFFILAVPHLIFPTTSQPAFLYYTCSAKANYTADSPFNINLDNVLRSISSNTQIDYGFYNATSGEDPDRATALALCRGGVSLEQCRSCVNNSTLRITQDCPNQKEAEGWYQDCQIRYSNNSIYGVGDSTTQIFLYNTQKAEDPDEFNEALRSLLDRLRIEAASGSSIRKCSWGDKKVRSPSMDTIYGLVDCFPDLSYLDCFNCLSILQTSLPICCNASIGARLLAVSCELNYEIRPIYASLLSPPPPPPPPPLPSPPPPSSPPPSSSPPRPGNSGSTDRSRSGSGSVVIVMVAIVSAVILLLAIFIILILRKRKHKRPLDGQFWFDCEIFKNNNNLWLGVYLEHATDEISTLKSQQMTSQVKTSSDRVDLGAVYKGKLRNGRHIAVKRLANNSQQGDVEFKNEVLLMLKLQHRNLVRLLGFCLQGSERLLIYEFVPNGSLDHFIFDIAKRTLLEWETRYKIINGIARGLLYLHEDSRHRIIHRDLKASNILLDVEMSPKISDFGMARLFEVDQTQGNTNRIVGTYGYMAPEYVKHGVFSVKSDVFSFGILVLEILSGKKNNNFHNREHSEDLSSFAWTNWRAGTTTNVIDSTLNIGSRIEMLRCIHIGLLCIQENIKNRPTMTSVVMMLSSSSLTLPIPSKPAFFLHSTTDGSNKLLKSDRNSCGSPSVQLSKNDISITEIHPR 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3378840 3384830 - Lsi01G003910.1 Lsi01g00391 653049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00391 715 Gene3D - 48 152 IPR038408 -
Lsi01g00391 715 Gene3D - 159 267 IPR038408 -
Lsi01g00391 715 Gene3D Phosphorylase Kinase; domain 1 372 465 - -
Lsi01g00391 715 Pfam Protein tyrosine and serine/threonine kinase 402 659 IPR001245 GO:0004672|GO:0006468
Lsi01g00391 715 MobiDBLite consensus disorder prediction 276 313 - -
Lsi01g00391 715 SUPERFAMILY Protein kinase-like (PK-like) 402 660 IPR011009 -
Lsi01g00391 715 MobiDBLite consensus disorder prediction 276 301 - -
Lsi01g00391 715 ProSiteProfiles Gnk2-homologous domain profile. 159 268 IPR002902 -
Lsi01g00391 715 Gene3D Transferase(Phosphotransferase) domain 1 466 666 - -
Lsi01g00391 715 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 10 ISOFORM X1 30 685 - -
Lsi01g00391 715 Pfam Salt stress response/antifungal 56 150 IPR002902 -
Lsi01g00391 715 Pfam Salt stress response/antifungal 169 264 IPR002902 -
Lsi01g00391 715 SMART serkin_6 396 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00391 715 CDD STKc_IRAK 398 654 - -
Lsi01g00391 715 ProSiteProfiles Protein kinase domain profile. 390 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00391 715 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 30 685 - -
Lsi01g00391 715 ProSitePatterns Serine/Threonine protein kinases active-site signature. 511 523 IPR008271 GO:0004672|GO:0006468
Lsi01g00391 715 ProSiteProfiles Gnk2-homologous domain profile. 50 153 IPR002902 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00391 Lsi02g00644 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00391 Lsi-Chr1:3378840 Lsi01g00396 Lsi-Chr1:3401529 0 dispersed
Lsi11g01478 Lsi-Chr11:23318287 Lsi01g00391 Lsi-Chr1:3378840 1.76E-40 dispersed
Lsi01g00390 Lsi-Chr1:3374309 Lsi01g00391 Lsi-Chr1:3378840 0 tandem
Lsi01g00391 Lsi-Chr1:3378840 Lsi01g00392 Lsi-Chr1:3385104 0 tandem
Lsi05g00921 Lsi-Chr5:16384944 Lsi01g00391 Lsi-Chr1:3378840 6.36E-07 transposed
Lsi01g00391 Lsi-Chr1:3378840 Lsi11g01476 Lsi-Chr11:23311286 1.23E-37 wgd
Lsi01g00391 Lsi-Chr1:3378840 Lsi02g00637 Lsi-Chr2:5689252 3.06E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83248 PF07714 PK_Tyr_Ser-Thr 3.10E-45 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00391 - - csv:105434447 828.165