Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00392 ATGAAGGCAGAGATGGGAAGGCTGAGTTTAGAAACGCTTTTCTTCATTCTCGCAGCCGCACAATTGATGTTTCCCACAACTTCTCAGCCACCATTTTTATTCCGCATTTGTTCAGACAAAGGCAACTACTCCAACCACAGCCCTTTCAAGAAAAATCTCGACAACGTACTTCTCTCCATCTCTTCCAATACCCAAGTCGATTACGGTTACTACAACGCCACCTCCGGCAAAGATCCCGACAGAGCCACCGCTTTGGCTCTTTGCCGTGGAGGCGTTCAGTTGGAACAATGTAGAAGCTGTGTGTATAACTCAACGCTAAGGATTACTCAAGATTGTCCAAACCAGAGAGAAGCAGAGGGATGGTACCAAGATTGTCAAATTCGTTACTCAAACAACACAATTTACGGCGTGGGAGACAGCACTATCCAGATAATCTTCTGGAACGTTGCAAAAGCGGAAGACCCAGACGGGTTCAATGAGGCGTTGAGGAATTTGTTCGATCGGCTGCGAGTGGAGGCTGCGTCGGGGAGTTCTATTCAGAAATCGGCTTGGGGAGGGGAGAAGATTCGAAATCCGAGCGTGGATACTGTATATGGATTGGTTGATTGTTATCCTGATTTGTCTTACTCGGACTGTTTTGATTGCCTAAATCAGCTTCAAAAAACTATTCCTAGTTGTTGTAATACGAGCATAGGGGTGAGATTAATTGCAACTAGTTGTCAACTCAATTATGAGCTCCACCCTATTTATCCTCTGTTTTCGTCTCCGCCTCCTCAGCCTCAGCCTCTGCCTCTGCCACCTCATTATCCTCCTCCTCCTCTGCCCTCACCATCGTCATCTTCGATTCCAAAACCTGGAAATAACGGCAATACCGGTAGAACCAAAACTATTGTAATCATTATGGTGACCATCGTTTCTACTGTCATTCTTCTTGTTACCATTTTTATTGTTTTGATATTGAGGAGGCAAAATCACAAAAGATCGTTAGAGCATTTCGAAGATATATCTATTGGAGACACCGCTGATGAAATTAGTAGCGTGGAGATGATTCAATTTGATTTTGATATTGTTAAAGCCGCAACAAATGACTTCGCAAATGAAAACAAGCTCGGACAAGGTGGATTTGGAGCTGTTTATAAGGGTATGTTACCTAATAGACGACTTATAGCTGTGAAGAGGCTTGCGAATAATTCACAACAAGGGGATGTTGAATTCAAAAATGAAGTTCTTTTGGTGGTCAAGCTTCAACATCGTAACTTGGTTAGGCTACTTGGGTTCTGTTTGCAAAGGAGCGAAAGACTTCTCATTTATGAGTTTGTACAAAATGGCAGCCTTGATCACTTTATATTTGGTATAACCTTGGTTTCTTTCTCTGATTTTGCAAAGCGGACACTATTAGATTGGGAAACACGTCTCAAAATCATAAATGGCATTGCGCGAGGACTTCTTTACCTCCATGAAGATTCTCGCCATCGAATCATACATCGTGATCTCAAAGCTAGCAATATTTTGTTGGATGTAGAAATGAATTCAAAGATTTCAGATTTTGGTATGGCAAGATTGTTCGAAGTAGATCAAACTCAAGGCAATACAATAAAATCAGATGTCTTTAGCTTTGGTATTTTGGTTCTTGAGATTTTGAGTGGTAAAAAAAACACTAATTTTCACAATGGAGAACACTTAGAAGATCTCTCAAGCTTTGCATGGACAAATTGGAGGGAAGGAACAATTGCGAATGTCATAGATTCAACCCTTAACGCTGGTTCAAGAATTGAGATGATAAGATGCATTCATATTGGACTATTGTGTGTTCAAGAAGATGTAACAACTCGACCAACAATGACTTCAGTAATTATGATGTTAAGTAGTTCTTCTATCACCCTTCCTCTACCTTCTAAACCAGCATTCTTCTTACATAGTACTATAAGTAGATCTAACATATTGTCAAGTTCAGATGGAACTAATTCTGAAAGTACATTTGATCAACTTTCGAAGAATAACATTTCAATTACGGAGATCTATCCTCGTTAG 2031 40.57 MKAEMGRLSLETLFFILAAAQLMFPTTSQPPFLFRICSDKGNYSNHSPFKKNLDNVLLSISSNTQVDYGYYNATSGKDPDRATALALCRGGVQLEQCRSCVYNSTLRITQDCPNQREAEGWYQDCQIRYSNNTIYGVGDSTIQIIFWNVAKAEDPDGFNEALRNLFDRLRVEAASGSSIQKSAWGGEKIRNPSVDTVYGLVDCYPDLSYSDCFDCLNQLQKTIPSCCNTSIGVRLIATSCQLNYELHPIYPLFSSPPPQPQPLPLPPHYPPPPLPSPSSSSIPKPGNNGNTGRTKTIVIIMVTIVSTVILLVTIFIVLILRRQNHKRSLEHFEDISIGDTADEISSVEMIQFDFDIVKAATNDFANENKLGQGGFGAVYKGMLPNRRLIAVKRLANNSQQGDVEFKNEVLLVVKLQHRNLVRLLGFCLQRSERLLIYEFVQNGSLDHFIFGITLVSFSDFAKRTLLDWETRLKIINGIARGLLYLHEDSRHRIIHRDLKASNILLDVEMNSKISDFGMARLFEVDQTQGNTIKSDVFSFGILVLEILSGKKNTNFHNGEHLEDLSSFAWTNWREGTIANVIDSTLNAGSRIEMIRCIHIGLLCVQEDVTTRPTMTSVIMMLSSSSITLPLPSKPAFFLHSTISRSNILSSSDGTNSESTFDQLSKNNISITEIYPR 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3385104 3389918 - Lsi01G003920.1 Lsi01g00392 653050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00392 676 ProSiteProfiles Gnk2-homologous domain profile. 140 249 IPR002902 -
Lsi01g00392 676 Pfam Protein tyrosine and serine/threonine kinase 367 526 IPR001245 GO:0004672|GO:0006468
Lsi01g00392 676 ProSitePatterns Protein kinases ATP-binding region signature. 370 392 IPR017441 GO:0005524
Lsi01g00392 676 ProSiteProfiles Gnk2-homologous domain profile. 31 134 IPR002902 -
Lsi01g00392 676 ProSiteProfiles Protein kinase domain profile. 364 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00392 676 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 532 650 - -
Lsi01g00392 676 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 11 532 - -
Lsi01g00392 676 Gene3D Transferase(Phosphotransferase) domain 1 440 627 - -
Lsi01g00392 676 MobiDBLite consensus disorder prediction 260 289 - -
Lsi01g00392 676 Gene3D Phosphorylase Kinase; domain 1 331 439 - -
Lsi01g00392 676 SUPERFAMILY Protein kinase-like (PK-like) 345 621 IPR011009 -
Lsi01g00392 676 MobiDBLite consensus disorder prediction 260 280 - -
Lsi01g00392 676 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 10 ISOFORM X1 532 650 - -
Lsi01g00392 676 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 10 ISOFORM X1 11 532 - -
Lsi01g00392 676 Gene3D - 139 248 IPR038408 -
Lsi01g00392 676 Gene3D - 31 133 IPR038408 -
Lsi01g00392 676 SMART serkin_6 364 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00392 676 Pfam Salt stress response/antifungal 153 245 IPR002902 -
Lsi01g00392 676 Pfam Salt stress response/antifungal 37 131 IPR002902 -
Lsi01g00392 676 CDD TM_EGFR-like 290 327 - -
Lsi01g00392 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 493 505 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00392 Lsi02g00640 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00389 Lsi-Chr1:3371229 Lsi01g00392 Lsi-Chr1:3385104 2.69E-64 dispersed
Lsi01g00392 Lsi-Chr1:3385104 Lsi01g00396 Lsi-Chr1:3401529 0 dispersed
Lsi01g00397 Lsi-Chr1:3413028 Lsi01g00392 Lsi-Chr1:3385104 1.88E-74 dispersed
Lsi01g00391 Lsi-Chr1:3378840 Lsi01g00392 Lsi-Chr1:3385104 0 tandem
Lsi01g00392 Lsi-Chr1:3385104 Lsi01g00393 Lsi-Chr1:3391639 2.28E-40 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83249 PF07714 PK_Tyr_Ser-Thr 2.40E-31 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00392 - - csv:105434447 838.95