Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00393 ATGATTTATCCCACCATTTCCCAGCTGGACTTCGCGAAATCTTCATGTCTAGACGCCGGCAACTACAGCACCCCCAGCAGCACTTACTGGAAAAATCTAGAAACCCTACTTTCCTCCGTCTCCTCCGATCCCCAGTTGCTAACTTACGGCTTTTACAATCTCTCCGCCGGAGAGGAGCCGGACAGAGTGAACGTCGTGGCCCTCTGCATTGGAGATATTTCGATGGATAGATGCAGTGCTTGCGTGGAGGAATCGAGCCGGAAGATTTTAGAGGTTTGCCCCAACCAGAAGGCTGCAATCGTGTGGTACGATCAGTGCTTGCTTCGGTACTCGGGAAGTGGAAATTACGATTGGGGCAGGGAGTCGATTTTCAACGGCAATAAGGCGTCGTCGGACCCGAATTATTTCGTTGAGGCAGTGAGGAGCTTAATGGGGAGACTAAGGAAAGAGGCTGCTTCAGGGAATTCGACTCGGAAACTCGGGAGCGGGGAGATATGGGCCGGCAACGAAACTGTGTACGGGCTTGTGCAGTGCATTCCCGACATGTCGTCCACGGATTGCGACAGCTGCGTTGGAAGCAAAAAAGGCAAAGGCAAAGGCAAAACTATTGCTATCATAGTCATAGTAGTGTCAATTCTTTCTACCGTCATTCTTTTCATTGGAATTTACTTCGGTTTGCGGATGAAAAGACGAAAACGCAAAATACCATCCGAAGAAGTTCAAATCAAAGGCATTGCCTTCCAAGAAACAACAGCTGAAATTAGCAACGTGGAGACGATTCAATTTGATTTTGAGACGATCAAAGTAGCAACAAATGAGTTCTCAGATGAAAATAAGCTTGGACAAGGTGGATTTGGACTTGTTTACAAGGGAAAGTTGTCTGATGGACAAAACATAGCAGTGAAGAGGCTGTCAAGAGATTCAAATCAAGGAGACTTGGAATTCAAAAATGAAGTCCTTGTAGTGGCCAAGCTTCAACACAGGAACTTAGTTAGGCTGCTAGGGTTCTGCTTTGATGGAAATGAAAGACTTCTCATCTATGAGTTTCTACCAAATGCCAGCCTAGATCACTTTATCTTCGATCTTATCAAACGCACAATTTTGGATTGGAAAACACGATACAAAATTATATGCGGCATTGCTCGAGGATTGCTATACCTCCATGAAGATTCCCGTGTCCGAATCATTCATCGAGATCTCAAAGCTAGCAATATTTTGTTGGATGGAAAAATGAATCCTAAAATTGCAGATTTTGGTATGGCAAGATTATTTGAATTAGACGAGACTCAACGTCAAACCAAGAGAATTGTGGGAACTTATGGTTACATGGCTCCAGAATATGCATACCATGGACAATTCTCACCAAAATCAGATGTGTTTAGTTTTGGAATTTTAATTCTTGAGATTATAAGTGGTCAGAAAAATGTTTGTTTTTGCAACGGAGAGGAAGACAAAGATCTTTTAAGCTCGGCATGGAAAAGTTGGAGGGCAGGGAAACCTGAAAATATAATAGATAAGATACTAATATCAGGTTCGAACGCTGAAATTAGAAGATGTATTCATATTGGATTGTTATGTGTTCAAGAGAACGTAGTGGATCGACCAACAATGGCTTCTGTAGTTTTGATGCTTAACAGCTTCTCTCTCGCACTCTCTCTACCCTCTGAACCTGCCTTTTTGTACAGCAATAATTACTACTCAAATGCACATAATTCTCAGAGTGCTCCTCTTCCAGCTTCAAATAATGGAATTTCCGTTTCTGATTTTTATCCTCGTTAG 1779 42.83 MIYPTISQLDFAKSSCLDAGNYSTPSSTYWKNLETLLSSVSSDPQLLTYGFYNLSAGEEPDRVNVVALCIGDISMDRCSACVEESSRKILEVCPNQKAAIVWYDQCLLRYSGSGNYDWGRESIFNGNKASSDPNYFVEAVRSLMGRLRKEAASGNSTRKLGSGEIWAGNETVYGLVQCIPDMSSTDCDSCVGSKKGKGKGKTIAIIVIVVSILSTVILFIGIYFGLRMKRRKRKIPSEEVQIKGIAFQETTAEISNVETIQFDFETIKVATNEFSDENKLGQGGFGLVYKGKLSDGQNIAVKRLSRDSNQGDLEFKNEVLVVAKLQHRNLVRLLGFCFDGNERLLIYEFLPNASLDHFIFDLIKRTILDWKTRYKIICGIARGLLYLHEDSRVRIIHRDLKASNILLDGKMNPKIADFGMARLFELDETQRQTKRIVGTYGYMAPEYAYHGQFSPKSDVFSFGILILEIISGQKNVCFCNGEEDKDLLSSAWKSWRAGKPENIIDKILISGSNAEIRRCIHIGLLCVQENVVDRPTMASVVLMLNSFSLALSLPSEPAFLYSNNYYSNAHNSQSAPLPASNNGISVSDFYPR 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3391639 3394994 - Lsi01G003930.1 Lsi01g00393 653051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00393 592 CDD STKc_IRAK 280 545 - -
Lsi01g00393 592 ProSitePatterns Serine/Threonine protein kinases active-site signature. 395 407 IPR008271 GO:0004672|GO:0006468
Lsi01g00393 592 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 198 567 - -
Lsi01g00393 592 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 15 192 - -
Lsi01g00393 592 SUPERFAMILY Protein kinase-like (PK-like) 262 574 IPR011009 -
Lsi01g00393 592 Gene3D Transferase(Phosphotransferase) domain 1 350 552 - -
Lsi01g00393 592 SMART serkin_6 274 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00393 592 Pfam Protein kinase domain 275 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00393 592 ProSiteProfiles Gnk2-homologous domain profile. 10 115 IPR002902 -
Lsi01g00393 592 ProSiteProfiles Protein kinase domain profile. 274 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00393 592 Gene3D Phosphorylase Kinase; domain 1 237 349 - -
Lsi01g00393 592 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 198 567 - -
Lsi01g00393 592 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 15 192 - -
Lsi01g00393 592 Pfam Salt stress response/antifungal 20 111 IPR002902 -
Lsi01g00393 592 Pfam Salt stress response/antifungal 131 194 IPR002902 -
Lsi01g00393 592 ProSiteProfiles Gnk2-homologous domain profile. 117 224 IPR002902 -
Lsi01g00393 592 ProSitePatterns Protein kinases ATP-binding region signature. 280 302 IPR017441 GO:0005524
Lsi01g00393 592 Gene3D - 9 113 IPR038408 -
Lsi01g00393 592 Gene3D - 121 197 IPR038408 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00393 Lsi-Chr1:3391639 Lsi01g00396 Lsi-Chr1:3401529 9.23E-37 dispersed
Lsi01g00392 Lsi-Chr1:3385104 Lsi01g00393 Lsi-Chr1:3391639 2.28E-40 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83250 PF00069 Pkinase 5.70E-46 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00393 - - csv:116401663 875.544