Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00396 ATGGGAACTCCAGAAAACCTTCTCTTTCTTTGCTTCATTCTCTCATTCATGGTTTCAACCACCATTTCTCAAATAGAAATCAAGGCCCACTTATGTTCAAACAGCGGCAACTACACCAGCAACAGTATTTACAAGCAAAATCTCGACACCCTCCTTTCCTCCATCGCCTCCAACACCGAAATTGATTACGGGTTCTACAATTTCTCAGCCGGACAGCAACCCGACACGGTCAACGCCATCGCCCTTTGCCTGGCCGATCTCACGGTAGAGAAATGCAGGAGCTGTCTCCAAAATTCGACTCGAAGGATTCTACAGGATTGTCCAAACCAGAAGGAGGCCATCGGATGGTACACCGATTGCATGGTTCGTTACTCAAATAGATCAATATTTGGCGTTGGGAACGATCGAGTGCTTGAGCCAACTTTTGTTTCCGGTCGGATTGCATCAGACATAGTTGGGTACACTCAATCACTCAGCAGTTTGTTGCAAAGACTGAGAAATCAGGCTGCGTCTGGGGATTCTAAACATAAATTTGCAGTGGGTGAAATTTCAGCCCCCAATTTGGAAACCATATTTGGGTTTCTTCAATGTACTCCCGATTTGTCCTCTGTGGATTGCAACAATTGTCTTATGAAGGCCGCTGAAAATTTTCCAAATGGAAGTACAGGAACGAGGATATTTTCGACCAGCTGCTTTTTGAGATTTGAAACTAACGATCTTTTCTACAACATTCCGTCGCCGCCTCCCACTGCTGGTGGCGCTCCATCCCCACCCATGTCACCGCCGCCGCCTCTGCCTCCAACGCCAGCCATCATTCTCTTTGTTGCCATTTTCATCATTTTGAGGTTGAGGAAGCGGAAGAACAGAAAATCAACAGACGAATTTGAAGGTGTTGTTACTGGGGACGCCACTGACGAAATTAGCAGTGTGGAGACCATTCAATTTGATTTTGAAACGATTAAAATTGCAACAAACAATTTTTCAAGTGAAAACAAGCTCGGACAGGGTGGATTTGGAGCTGTTTACAAGGGTAAACTAGCTAATGGACAACATATAGCAGTGAAGAGGCTTGCAAATAATTCACAACAAGGAGATGTTGAATTCAAAAATGAAGTCCTTTTGGTGGTCAAACTTCAACATCGAAACTTGGTTAGGCTGTTGGGATTTTGCTTGCAAAGAACTGAAAGGCTTCTCATATATGAGTTTGTACCAAATGCCAGTCTTGACCAATTCGTATTTGATTTTGAAAAAAGGACACTATTAGATTGGGAAAGACGATTCAAAATCATAAATGGCATTGCACGGGGACTTCTTTACCTTCATGAAGATTCTCGCCTTCGAATCATTCATCGTGATCTCAAAGCTAGTAATATTTTGTTGGATGAGGAAATGAATCCAAAGATTGCTGATTTTGGTATGGCAAGATTGTTTGAAGTAGATGAGACTCAAGGCAACACAAGTAGAATTGTGGGAACTTATGGCTATATGGCTCCAGAGTATTTAATGCATGGCCAATTTTCAGTTAAATCGGACGTCTTTAGCTTTGGTGTCTTAATTCTTGAAATCGCATGGAAAAATTGGAAGGCTGGAACGACTAAAAACGTCATAGATTCAACACTTAGTGTTGGTTCAAGTGTTGAAATGTTAAGATGCATTCATATTGGATTATTGTGTGTTCAAGAGAATGCCGCAGATCGTCCGACGATGGCTACAGTAGTTCTTATGCTTAGTAGCATCTCTCTCACTCTTCCTGTACCTATGGAACCAGCATTCTTCATGCATAGTAACATTGATGAATCCAACACACAATCAAAGACAAATCAGTGTTTGGAAATGAATGAGGCGGCTAGGCATTGTGAAAGCATACCCCTCCAATCAATAACCAATGAACCTTTTTTGACAAAGCCTGCTCTGACAAAGGCAATTACACCACCAACAGCCCCTTTCAAGAAAAATCTCGACACCGTACTTCTCTCTATCTCTTCCAACAAACAGGTCGATTCCCGTTTCTATAATGCCTCCTCCGGCGAAAATCCCGACAGAGCCACCGCTGTGGCTCTTTGTCGTGGAAATGTTCCGCTAGAAAAATGCAGAAGTTGCGTGAATGACTCAATCCACAGGATTATACAAGATTGTCCGACCCAGAAGGAAGCTGTGGGATGGTACCCCGATTGCCAAATTCGCTACTCAAACAACTCTATTTACGGTGTCAGAGACAGTTCTGTGATGCGAGCATATATGAACCTTCAAAAATCCTCAGACCCAATTGGTTTCAGTCAGACACTGAGGAGCTTGTTGGATACACTGCGAGACGAGGCCGCGTCAGGGACTTCTATTAAAAAATCTGCGGCCGGTAAATTGGCGGTTCCGAGTCCCAGTTTGGATACGATATACGCACTTGTTGATTGTTTTCCTGATTTGTCATCGTTGGATTGTAATGGTTGCCTCAGTCAGCTTCAAAGCTATATTCCCAATTGTTGTAATGCCAGCATAGGGGCGAGAATAACTGCAACTAGTTGCCAATTGAATTATGAGATCCAGCCTTTCTTTGAGTTGTCTCCGCCTCCACCACCATCACGGCCTCCGTCCGCGGCGGCAGAGACTCCACCATCAGCTGTTAAAGCCCCCTCCCCATCTTCATCTTCAAACGAGGGAAGTAATGGCAATACAGCTAGAACGGTTATAATTGTTGTGGTGTCCATCGTTTCAGCCATCATTCTCATTGTTGGCATTTGCATCATTTTAAGATTGAGGAAGCGAAAGCACAAAACAACACTAGAAAAATTTGAAAGCGTTGCTCTTGGAGATGCTACTCATGAAATTAGCAATGTGGAGACAATTCAATTTGATTTTCAAACCATTAAAATTGCAACAAATGACTTCTCAAGTGAAAATAAGCTAGGACAGGGTGGATTTGGAGCTGTTTACATGGGTAAGCTACTTAATGGACAACATATTGCAGTAAAGAGGCTTGCACATAATTCACAACAAGGAGATCTTGAATTCAAAAATGAAGTTCTTTTGGTGGTCAAGCTTCAACATCGAAACTTGGTTAGGCTGCTGGGATTCTGCTTGCAAGGAAGTGAAAGACTTCTCATATATGAATTTGTACCAAATGGCAGCCTTGACCACTTCATATTTGATTTTGGAAAGCGGGCACGCCTAGATTGGGAAAAACGATACAAAATCATAAACGGTGTTGCACGAGGACTTCTTTACCTTCATGAAGATTCACGCCTTCGAATCATACATCGTGATCTCAAAGCTAGCAATATTTTGTTGGATGAGGAAATGAATCCAAAGATTGCAGATTTTGGTATGGCAAGATTGTTCGAAGTAGATGAGACTCAAGGCAATACAAGTAGAGTTGTAGGAACATATGGCTACATGGCTCCTGAGTATATAATGCACGAACAATTCTCAGTGAAATTAGACGTTTTTAGTTTTGGTGTTTTGGTTCTTGAAATTGTGAGTGGCCAAAAGAATAATTGCTTTCACAAGGGAGATCAAAAAGCCGAAGATCTCTCCAGCTTTGCATGGAAAAATTGGAGGGCAGGAACAAGTACAAACGTCATAGATTCAACACTTAGTGTTGGTTCAAGGATTGAAATGATAAAATGCATTCACATTGGACTTTTATGCGTTCAAGAAAGCATAGCAAATCGGCCAACAACAGCTTCTGTAGTTTTGATGCTGAGTAGTCCTTCTCTCACTCTCCCTATACCCTCTGAACCTGCATTCTTCATGGATAGTAACACCTATGAATCCAACACAACGTTAAAGCAATCAGATGGAGAGCTAAAAGTGATTCAGGCTAGTGATTCTAAAACAAAATCCATTCATATTTATGAGAATGAAGCTTCAAGTACTGAGCTCTACCCTCGCTAG 3888 42.16 MGTPENLLFLCFILSFMVSTTISQIEIKAHLCSNSGNYTSNSIYKQNLDTLLSSIASNTEIDYGFYNFSAGQQPDTVNAIALCLADLTVEKCRSCLQNSTRRILQDCPNQKEAIGWYTDCMVRYSNRSIFGVGNDRVLEPTFVSGRIASDIVGYTQSLSSLLQRLRNQAASGDSKHKFAVGEISAPNLETIFGFLQCTPDLSSVDCNNCLMKAAENFPNGSTGTRIFSTSCFLRFETNDLFYNIPSPPPTAGGAPSPPMSPPPPLPPTPAIILFVAIFIILRLRKRKNRKSTDEFEGVVTGDATDEISSVETIQFDFETIKIATNNFSSENKLGQGGFGAVYKGKLANGQHIAVKRLANNSQQGDVEFKNEVLLVVKLQHRNLVRLLGFCLQRTERLLIYEFVPNASLDQFVFDFEKRTLLDWERRFKIINGIARGLLYLHEDSRLRIIHRDLKASNILLDEEMNPKIADFGMARLFEVDETQGNTSRIVGTYGYMAPEYLMHGQFSVKSDVFSFGVLILEIAWKNWKAGTTKNVIDSTLSVGSSVEMLRCIHIGLLCVQENAADRPTMATVVLMLSSISLTLPVPMEPAFFMHSNIDESNTQSKTNQCLEMNEAARHCESIPLQSITNEPFLTKPALTKAITPPTAPFKKNLDTVLLSISSNKQVDSRFYNASSGENPDRATAVALCRGNVPLEKCRSCVNDSIHRIIQDCPTQKEAVGWYPDCQIRYSNNSIYGVRDSSVMRAYMNLQKSSDPIGFSQTLRSLLDTLRDEAASGTSIKKSAAGKLAVPSPSLDTIYALVDCFPDLSSLDCNGCLSQLQSYIPNCCNASIGARITATSCQLNYEIQPFFELSPPPPPSRPPSAAAETPPSAVKAPSPSSSSNEGSNGNTARTVIIVVVSIVSAIILIVGICIILRLRKRKHKTTLEKFESVALGDATHEISNVETIQFDFQTIKIATNDFSSENKLGQGGFGAVYMGKLLNGQHIAVKRLAHNSQQGDLEFKNEVLLVVKLQHRNLVRLLGFCLQGSERLLIYEFVPNGSLDHFIFDFGKRARLDWEKRYKIINGVARGLLYLHEDSRLRIIHRDLKASNILLDEEMNPKIADFGMARLFEVDETQGNTSRVVGTYGYMAPEYIMHEQFSVKLDVFSFGVLVLEIVSGQKNNCFHKGDQKAEDLSSFAWKNWRAGTSTNVIDSTLSVGSRIEMIKCIHIGLLCVQESIANRPTTASVVLMLSSPSLTLPIPSEPAFFMDSNTYESNTTLKQSDGELKVIQASDSKTKSIHIYENEASSTELYPR 1295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3401529 3409258 - Lsi01G003960.1 Lsi01g00396 653054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00396 1295 ProSiteProfiles Gnk2-homologous domain profile. 26 129 IPR002902 -
Lsi01g00396 1295 CDD STKc_IRAK 333 579 - -
Lsi01g00396 1295 ProSiteProfiles Protein kinase domain profile. 961 1237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00396 1295 ProSiteProfiles Gnk2-homologous domain profile. 629 734 IPR002902 -
Lsi01g00396 1295 Gene3D Phosphorylase Kinase; domain 1 294 402 - -
Lsi01g00396 1295 Gene3D Phosphorylase Kinase; domain 1 923 1036 - -
Lsi01g00396 1295 CDD STKc_IRAK 967 1232 - -
Lsi01g00396 1295 MobiDBLite consensus disorder prediction 851 865 - -
Lsi01g00396 1295 ProSiteProfiles Gnk2-homologous domain profile. 740 849 IPR002902 -
Lsi01g00396 1295 Gene3D Transferase(Phosphotransferase) domain 1 1037 1238 - -
Lsi01g00396 1295 Gene3D Transferase(Phosphotransferase) domain 1 403 583 - -
Lsi01g00396 1295 Pfam Salt stress response/antifungal 751 845 IPR002902 -
Lsi01g00396 1295 Pfam Salt stress response/antifungal 645 731 IPR002902 -
Lsi01g00396 1295 Pfam Salt stress response/antifungal 153 237 IPR002902 -
Lsi01g00396 1295 Pfam Salt stress response/antifungal 32 126 IPR002902 -
Lsi01g00396 1295 Pfam Protein tyrosine and serine/threonine kinase 330 574 IPR001245 GO:0004672|GO:0006468
Lsi01g00396 1295 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 10 522 - -
Lsi01g00396 1295 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 523 604 - -
Lsi01g00396 1295 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 649 1261 - -
Lsi01g00396 1295 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1082 1094 IPR008271 GO:0004672|GO:0006468
Lsi01g00396 1295 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Lsi01g00396 1295 Pfam Protein kinase domain 962 1170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00396 1295 SUPERFAMILY Protein kinase-like (PK-like) 949 1256 IPR011009 -
Lsi01g00396 1295 MobiDBLite consensus disorder prediction 873 887 - -
Lsi01g00396 1295 SUPERFAMILY Protein kinase-like (PK-like) 315 608 IPR011009 -
Lsi01g00396 1295 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 522 - -
Lsi01g00396 1295 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 523 604 - -
Lsi01g00396 1295 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 649 1261 - -
Lsi01g00396 1295 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Lsi01g00396 1295 ProSitePatterns Protein kinases ATP-binding region signature. 967 989 IPR017441 GO:0005524
Lsi01g00396 1295 ProSiteProfiles Gnk2-homologous domain profile. 136 240 IPR002902 -
Lsi01g00396 1295 Gene3D - 141 239 IPR038408 -
Lsi01g00396 1295 Gene3D - 24 128 IPR038408 -
Lsi01g00396 1295 Gene3D - 739 849 IPR038408 -
Lsi01g00396 1295 Gene3D - 633 733 IPR038408 -
Lsi01g00396 1295 MobiDBLite consensus disorder prediction 851 887 - -
Lsi01g00396 1295 ProSiteProfiles Protein kinase domain profile. 327 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00396 1295 SMART serkin_6 961 1213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00396 1295 SMART serkin_6 327 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00388 Lsi-Chr1:3368912 Lsi01g00396 Lsi-Chr1:3401529 9.52E-155 dispersed
Lsi01g00390 Lsi-Chr1:3374309 Lsi01g00396 Lsi-Chr1:3401529 0 dispersed
Lsi01g00391 Lsi-Chr1:3378840 Lsi01g00396 Lsi-Chr1:3401529 0 dispersed
Lsi01g00392 Lsi-Chr1:3385104 Lsi01g00396 Lsi-Chr1:3401529 0 dispersed
Lsi01g00393 Lsi-Chr1:3391639 Lsi01g00396 Lsi-Chr1:3401529 9.23E-37 dispersed
Lsi01g00396 Lsi-Chr1:3401529 Lsi02g00648 Lsi-Chr2:5801730 6.86E-130 dispersed
Lsi02g00650 Lsi-Chr2:5821030 Lsi01g00396 Lsi-Chr1:3401529 7.94E-66 dispersed
Lsi02g00654 Lsi-Chr2:5844675 Lsi01g00396 Lsi-Chr1:3401529 1.42E-31 dispersed
Lsi08g01657 Lsi-Chr8:24371565 Lsi01g00396 Lsi-Chr1:3401529 2.45E-81 dispersed
Lsi01g00394 Lsi-Chr1:3397561 Lsi01g00396 Lsi-Chr1:3401529 3.86E-06 proximal
Lsi01g00396 Lsi-Chr1:3401529 Lsi01g00397 Lsi-Chr1:3413028 2.54E-59 tandem
Lsi01g00596 Lsi-Chr1:4755811 Lsi01g00396 Lsi-Chr1:3401529 1.94E-70 transposed
Lsi07g00825 Lsi-Chr7:9191165 Lsi01g00396 Lsi-Chr1:3401529 8.39E-07 transposed
Lsi01g00396 Lsi-Chr1:3401529 Lsi02g00634 Lsi-Chr2:5659371 1.05E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83251 PF00069 Pkinase 6.70E-47 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00396 - - sind:105175425 1142.87