Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00409 ATGGCTACCCATCAGCCACTTCTTCTTCAACCCCCCAAAACTCCCCGTTCCAAAACCATCCCAACAATCCTCTGTTTGGCTGCAATTTTGTGCTCAGCCATTTTCATTACCAACAAATTGATCAAATCAAACCCATCTGAAAATGATCTCCCCTTCCTTCACAACATATGCCACAAGGCATACAACCCATCATCCTGCATTGAAATGGCCGCCTCAGAATTTCCCTTTCCTCGAGAAATCAAAACCACGAACGGGGCTCATTTCTTACATTCTTTCTTGAGGAAATCCATTCCCATAGTGATTAACACAATCGAGAGAGCCAAAGATATCAGCCAAAGAATCAACAACCCTCGCGGTGAAGCAGCTTTAGCCGATTGTGTCGAGCTTATGGAGATCTCAAACAGCCGAATCATGGACTCTGTTTCGGCTCTGAAGAACAGAACAAGCGGCTCAATCGAAAATGCCCACACATGGCTGAGTAGCGTGCTGACAAACCACATCACGTGCTGGGATGAGGTCGAGAATTCAGTATCCAGAGCAGCGGCCATGGATTTAGGGCTCGAAGAGTTGATTATGAGAGGGAGAAACTCGTTGGGGATGTTGGTTTCAATTTGGGGATCGGAAATTGAAGAGATGGAGAAAATGGGAAATGGGTATCCGAGTTGGTTGAAGAAAGGAGATCGGAGACTGTTGGGGGTTTCGGGGAGAGAAATGGAAGCGAATATCGTGGTGGCGAAAGATGATAGTGGGAATTTCAAGACGGTGAAGGAGGCGGTTGAAGCAGTTCCAGATAAGAGCAAGAACAGAGTTGTTATATATGTGAAGAAGGGGATTTATAAGGAAAATGTCGAAGTGGGAAAGAAGAAAAAGAATGTGATGATCGTTGGAGATGGAATGGATTCCACCATTATCACTGGTAGCCTCAACGTCATTGATGGATCAACAACTTTCAAGTCTGCAACTGTAGCTGCGGTGGGAGATGGATTTATAGCCCAAGACATTTGGTTCCAAAACACAGCCGGGCCGGAAAAGCACCAAGCAGTGGCACTTCGGGTCGGAGCAGACCAATCCGTCATAAACCGATGTCGTATCGACGCTTATCAAGACACTCTCTACGCACATTCCAACCGTCAATTCTACCGAGATTCCACCATCACCGGTACCGTGGACTTCATATTCGGCAACGCCGCCGTCGTGTTACAGAACTGTAAAATAGAGCCCCGACGGCCGATGAGCAACCAGGCCAACATGGTGACGGCGCAAGGCCGAATCGACCCAAATCAGAACACTGGAATTTCGATCCAGAAATGTGAAATCGTGGCAAGCTCCGACCTGGAACCCGTTAAGCGGTCGATTAAGACATATTTGGGGCGCCCATGGAAGGAGTTTTCGAGGACCGTCGTCATGCAGTCCGGAATCGGCGATCTTATTGATCCAGCAGGCTGGGCCGAGTGGAGTGGGGATTTTGCATTGAAGACGCTGTATTATGGTGAGTATTCAAATAATGGGCCGGGCTCTGATGTTAGCAAGCGAGTGAAGTGGGCCGGTTACCATGTCATTACGAGCCCATCTGAGGCCCAAAAATTCACGGTGGATTCACTTATACAAGGAGGTCAATGGCTGGGCCCCACAGGCGCGACTTTTATCCCAGGGCTGTGA 1659 48.4 MATHQPLLLQPPKTPRSKTIPTILCLAAILCSAIFITNKLIKSNPSENDLPFLHNICHKAYNPSSCIEMAASEFPFPREIKTTNGAHFLHSFLRKSIPIVINTIERAKDISQRINNPRGEAALADCVELMEISNSRIMDSVSALKNRTSGSIENAHTWLSSVLTNHITCWDEVENSVSRAAAMDLGLEELIMRGRNSLGMLVSIWGSEIEEMEKMGNGYPSWLKKGDRRLLGVSGREMEANIVVAKDDSGNFKTVKEAVEAVPDKSKNRVVIYVKKGIYKENVEVGKKKKNVMIVGDGMDSTIITGSLNVIDGSTTFKSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVGADQSVINRCRIDAYQDTLYAHSNRQFYRDSTITGTVDFIFGNAAVVLQNCKIEPRRPMSNQANMVTAQGRIDPNQNTGISIQKCEIVASSDLEPVKRSIKTYLGRPWKEFSRTVVMQSGIGDLIDPAGWAEWSGDFALKTLYYGEYSNNGPGSDVSKRVKWAGYHVITSPSEAQKFTVDSLIQGGQWLGPTGATFIPGL 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3476766 3479077 + Lsi01G004090.1 Lsi01g00409 653067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00409 552 Pfam Plant invertase/pectin methylesterase inhibitor 52 179 IPR006501 GO:0004857
Lsi01g00409 552 PANTHER PECTINESTERASE 20 551 - -
Lsi01g00409 552 SMART PMEI_2 48 200 IPR006501 GO:0004857
Lsi01g00409 552 TIGRFAM PME_inhib: pectinesterase inhibitor domain 25 173 IPR006501 GO:0004857
Lsi01g00409 552 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 52 175 IPR035513 -
Lsi01g00409 552 Pfam Pectinesterase 241 537 IPR000070 GO:0030599|GO:0042545
Lsi01g00409 552 ProSitePatterns Pectinesterase signature 1. 266 285 IPR018040 -
Lsi01g00409 552 Gene3D - 235 552 IPR012334 -
Lsi01g00409 552 SUPERFAMILY Pectin lyase-like 239 551 IPR011050 -
Lsi01g00409 552 PANTHER PECTINESTERASE 20 551 - -
Lsi01g00409 552 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 203 IPR035513 -
Lsi01g00409 552 CDD PMEI-like_4 50 204 - -
Lsi01g00409 552 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00409 Lsi-Chr1:3476766 Lsi05g01321 Lsi-Chr5:20974152 4.55E-35 dispersed
Lsi01g00409 Lsi-Chr1:3476766 Lsi02g02855 Lsi-Chr2:34762746 1.65E-152 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00409 K01051 - csv:101216377 983.4