Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00412 ATGAGTGGATATGGGTCGAAATGCACAAAGCCGTACTATCAGCTTCCGACGAATGCTCCGACGCGATCTCTGGAGTTGGGCATCACAAATTTCGGTCCACAGTCGTCGGGATTTGTGGGAGAAATGTACGGAGCGGCGGACTTTTTCCGATCGATATCGAGACCTTCAGAAGGCGAGAAACCGGTTATCGTTGAGCTGGCGGTTTCAGGGATGGAGGAATTAAGGAGAATGGCTCAGGGCGGGGAGCCGTTGTGGGTTGCGGGTGATGGGAAGTCGTCGAGCGAAGTTGTTCTTAACGAAGCAGAGTATTTGAGTAGTTTCGGAGGCGGAATTGGAGGAAAGCCCATGGGCTTTAGAACTGAAGCTTCACGAGTTTCGGCTATTGTGTTCATCAACCATATGAAGCTCGTCGATATTTTTATGGATGCTACGCAATGGTCCACGGTGTTCTGCTGCATTGTTTCGAGAGCATCCACTGTGGAAATTCTTTCGCCCGGCCTACCTGGAAACTTCAACGGGGCCTTGCATGTGATGAGCGCTGAATTTCAAGTCCCATCGCCACTTGTTCCGACTCGTGAAAACTACTTCGTAAGATACTGCAAACAACAAAGCGAAGGGTTATGGGCGGTGGCTGATGTTTCCTTAGACACCTTGCGTCCTTCTCTCATTCCTAACACCCGAAGAAAACCCTCTGGTTGCTTAATTCAAGAATTGCCCAACGGCTATTCCAAGATCACTTGGGTCGAACATGTAGAGGTCGACGAAACTGGCGTCCCCACAATGTACAGACCACTCGTTAACTCCGGCCTCGCTTTCGGGGCTAAGCGATGGGTTGCGACTTTAGATCGCCAATCTGAGCGTTTCGCCACTTCAATCGCCACCACCATTCCCACCGGCGATTTACGCGTGATATCGAGTATTGAAGGAAGGAAGAGTATGCTGAAGTTAGCAGAAAGAATGGTGACAAGCTTCTGCGCCGGCGTCGGCGCGTCCAGTGTACACGCTTGGACGGCTTTACCTGCTGCCACCGGCGATGAGGTTCGTGTTGTGACGAGGAAGAGCACCGACGAACCAGGACGACCACCCGGCGTTGTACTGAGCGCCGCCACTTCTTTTTGGATCCCTGTTCCACCTAAAGTTGTCTTTGATTTCCTTCGTAAAGAGAAATCTCGAAGCGAGTGGGATATTCTGTCGAATGGGGGATTGGTTCAGGAAATGGCGCATATAGCCAACGGCCGTCACTCCGGGAATTGTGTCTCCTTGCTTCGTGTCAATAGTGCGAATTCGAGCCAGAGCAATATGCTGATACTACAAGAAAGCTGCACCGACTCAACGGGATCGTACGTTATTTATGCTCCGGTGGACACCGTTGCAATGAACGTGGTGCTAAGCGGTTGCGATCCAGATTACGTGGCACTTCTACCGTCAGGATTCGCCATACTTCCAGACGGGCCCGGCGGAGGAGACAACAACGGCGGCGGAATTCTGGAGCTGGGATCCGGTGGGTCACTCATCACAGTTGCATTTCAAATCCTGGTTGATTCAGTTCCAACGGCTAGACTTTCAATTGGATCAGTGGCCACCGTCAACAGTCTGATTAAATGCACGGTTGAGAGGATCAGAGCCGCCGTGATGCGTGAAAACCCATGA 1650 51.58 MSGYGSKCTKPYYQLPTNAPTRSLELGITNFGPQSSGFVGEMYGAADFFRSISRPSEGEKPVIVELAVSGMEELRRMAQGGEPLWVAGDGKSSSEVVLNEAEYLSSFGGGIGGKPMGFRTEASRVSAIVFINHMKLVDIFMDATQWSTVFCCIVSRASTVEILSPGLPGNFNGALHVMSAEFQVPSPLVPTRENYFVRYCKQQSEGLWAVADVSLDTLRPSLIPNTRRKPSGCLIQELPNGYSKITWVEHVEVDETGVPTMYRPLVNSGLAFGAKRWVATLDRQSERFATSIATTIPTGDLRVISSIEGRKSMLKLAERMVTSFCAGVGASSVHAWTALPAATGDEVRVVTRKSTDEPGRPPGVVLSAATSFWIPVPPKVVFDFLRKEKSRSEWDILSNGGLVQEMAHIANGRHSGNCVSLLRVNSANSSQSNMLILQESCTDSTGSYVIYAPVDTVAMNVVLSGCDPDYVALLPSGFAILPDGPGGGDNNGGGILELGSGGSLITVAFQILVDSVPTARLSIGSVATVNSLIKCTVERIRAAVMRENP 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3515519 3519042 + Lsi01G004120.1 Lsi01g00412 653070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00412 549 SMART START_1 65 287 IPR002913 GO:0008289
Lsi01g00412 549 SUPERFAMILY Bet v1-like 309 541 - -
Lsi01g00412 549 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 18 546 - -
Lsi01g00412 549 CDD START_ArGLABRA2_like 60 286 - -
Lsi01g00412 549 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 18 546 IPR042160 -
Lsi01g00412 549 SUPERFAMILY Bet v1-like 59 288 - -
Lsi01g00412 549 ProSiteProfiles START domain profile. 56 290 IPR002913 GO:0008289
Lsi01g00412 549 Pfam START domain 67 287 IPR002913 GO:0008289
Lsi01g00412 549 Gene3D - 116 287 IPR023393 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00412 Lsi02g00624 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00412 Lsi-Chr1:3515519 Lsi10g00143 Lsi-Chr10:2279076 0 dispersed
Lsi04g01227 Lsi-Chr4:19023880 Lsi01g00412 Lsi-Chr1:3515519 3.38E-104 dispersed
Lsi07g00984 Lsi-Chr7:13412134 Lsi01g00412 Lsi-Chr1:3515519 3.18E-54 dispersed
Lsi01g00412 Lsi-Chr1:3515519 Lsi11g01463 Lsi-Chr11:23201740 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00412 K09338 - csv:101209093 1022.31