Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00413 ATGATCTCTTCACTGAGGCTTACATCTTCCAATTACACTTCCTCTGAATTTTTCAATAGAAAATCTCCAGTTCTGAGGCCGAATCTTCCGTTGCAGTCCCTGGATTGCAGTGCCCTTAAACATGTCGATCGATCTCTTTCTACCAACAAACCACTTCACATCTCGTCCGTTGAAAATCTTTCTTTGCCCACAAAATCATCTGAGCGTTCGACGACGTGCAGGGCTTATGAGGCCGAATCGCGGCCTCTGGAGATTAACATTGAGCTTCCCGATGAACAGACGGCTCAGAAACTCAAAATTGGGCTCTATTTCGCCACTTGGTGGGCTTTGAATGTGGTGTTTAATGTCTACAACAAGAAGGTTCTTAATGCCTTCCCTTATCCTTGGCTCACCTCCACTCTCTCCCTCGCCGCTGGATCGCTCATGATGCTTGTTTCTTGGGCCACTAGAATGGTCGACGCTCCCAAAACCGATTTGGATTTCTGGAAATCCCTATTGCCGGTCGCAGTGGCACATACGATTGGGCATGTTGCAGCAACTGTGAGCATGTCCAAAGTCGCAGTCTCATTCACTCACATAATCAAGAGTGGGGAGCCGGCTTTTAGTGTGTTGGTCTCTAGGTTTCTGTTGGGTGAGATGTTTCCATTGCCTGTTTACTTATCTCTTATCCCAATCATTGGAGGCTGTGCTCTTTCCGCCATGACTGAGCTCAATTTCAACATGATTGGTTTCTCGGGAGCGATGATATCAAACTTGGCATTTGTGTTTAGAAACATATTCTCAAAGAAAGGGATGAAGGGAAAGTCAGTGAGTGGGATGAATTACTATGCTTGCCTCTCATTGCTGTCTCTGCTAATTCTTACTCCTTTCGCCATGGCTGTGGAGGGACCCAAGTTGTGGGCTGAAGGATTCCAAAAGGCTCTCTCTCAAATTGAATGTGTGAACTCGAACCCATTGTTGCCTAATAAAAGAGCATTGTTTGTTTGTGTGAAATTCAGGTGGTTAGGAGCTCAAAGTATGTTCTATCACTTGTACAATCAAGTGTCTTACATGTCTCTAGATCAGATATCGCCATTGACATTCAGCGTGGGTAACACAATGAAGAGAATTTTCGTAATAGTGTCGTCCATTATCATCTTCCACACGCCGGTCCGACCCGTAAACGCCATGGGAGCTGCCATTGCAATCCTTGGAACGTTCCTCTACTCGCAGGTACACCTTTCCCTCTAA 1230 45.77 MISSLRLTSSNYTSSEFFNRKSPVLRPNLPLQSLDCSALKHVDRSLSTNKPLHISSVENLSLPTKSSERSTTCRAYEAESRPLEINIELPDEQTAQKLKIGLYFATWWALNVVFNVYNKKVLNAFPYPWLTSTLSLAAGSLMMLVSWATRMVDAPKTDLDFWKSLLPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGEMFPLPVYLSLIPIIGGCALSAMTELNFNMIGFSGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSLLSLLILTPFAMAVEGPKLWAEGFQKALSQIECVNSNPLLPNKRALFVCVKFRWLGAQSMFYHLYNQVSYMSLDQISPLTFSVGNTMKRIFVIVSSIIIFHTPVRPVNAMGAAIAILGTFLYSQVHLSL 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3525649 3527512 + Lsi01G004130.1 Lsi01g00413 653071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00413 409 SUPERFAMILY Multidrug resistance efflux transporter EmrE 140 234 - -
Lsi01g00413 409 PANTHER SOLUTE CARRIER FAMILY 35 38 405 - -
Lsi01g00413 409 Pfam Triose-phosphate Transporter family 98 403 IPR004853 -
Lsi01g00413 409 PANTHER GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, CHLOROPLASTIC 38 405 - -
Lsi01g00413 409 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 98 407 IPR004696 GO:0016021|GO:0022857|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00413 Lsi-Chr1:3525649 Lsi05g00617 Lsi-Chr5:7593979 9.23E-180 dispersed
Lsi01g00413 Lsi-Chr1:3525649 Lsi04g01225 Lsi-Chr4:18936200 9.76E-179 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00413 K15283 K05350 csv:101216621 645.58