Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00426 ATGGCTTGCTCAAACTTGACAATGTGGGTATCCTCAAAACCGTCTTCTTCCGATGCTTCCGCTCTTTGTTTTCGGCCTTTCAATCCTCTTCAAGTTCCTTCTCAAGGCTCTGCCGCGCGATCCTCATCTGTCACTCCGATTCAGTGCGGCCTCCGTGAGCTTCGAGAACGGATTGATTCAGTGAAGAACACCCAGAAAATTACCGAGGCTATGAAGCTTGTTGCTGCTGCCAAAGTGCGTAGAGCTCAAGAAGCTGTTGTTAATGGAAGACCATTCTCGGAGTCTCTAGTTGAAGTTCTTTACAATATCAACGAGCAGCTCCAAACCGAAGATATAGATGTACCTCTGACAAAAGTTCGACCAGTCAAGAAGGTTGCTTTGATTGTTGTAACAGGGGATCGAGGCCTCTGCGGCAGTTTCAATAACATGATCATCAAAAAGGCAGAGTCCAGGATCGCAGAATTGAAGACCCTTGGTCTTGATTATACAGTTATTAGCGTGGGCAAGAAGGGGAATTCGTATTTCCTTCGCCGGCCTTACATCCCAGTAGATAGATTTCTTGAGGGTGGTTCACTTCCGACAGCTAAAGAAGCTCAAGCCATTGCAGACGATGTTTTTTCCCTCTTTATTAGCGAAGAGGTCGACAAAGTCGAGCTTCTGTACACCAAATTCGTGTCATTAGTTAAATCGGACCCTGTGATCCACACTCTGCTTCCATTATCACCTAAAGGAGAGATTTGTGATATAAATGGTGTTTGTGTTGATGCCGCAGAGGACGAATTCTTCAGATTGACGACAAAAGAAGGAAAATTGACCGTAGAGAGAGATGCCGTGAGGACAAAAACCTCAGATTTCTCCCCAATTTTACAGTTTGAGCAGGACCCAGCTCAGATTCTTGATGCTTTATTACCTCTCTATTTGAACAGTCAAATTTTGAGGTCATTGCAGGAATCATTAGCAAGTGAACTTGCGGCCAGAATGAGCGCCATGAGCAATGCAACTGATAATGCAAGCGAGTTGAAGAAGACACTCTCTATTGTTTACAACAGACAGCGGCAAGCTAAAATCACTGGCGAGATTTTGGAGATTGTTGCTGGTGCCAACGCTTTGACTTGA 1116 44.89 MACSNLTMWVSSKPSSSDASALCFRPFNPLQVPSQGSAARSSSVTPIQCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSESLVEVLYNINEQLQTEDIDVPLTKVRPVKKVALIVVTGDRGLCGSFNNMIIKKAESRIAELKTLGLDYTVISVGKKGNSYFLRRPYIPVDRFLEGGSLPTAKEAQAIADDVFSLFISEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDAVRTKTSDFSPILQFEQDPAQILDALLPLYLNSQILRSLQESLASELAARMSAMSNATDNASELKKTLSIVYNRQRQAKITGEILEIVAGANALT 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3608956 3610071 + Lsi01G004260.1 Lsi01g00426 653084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00426 371 PRINTS ATP synthase gamma subunit signature 348 369 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi01g00426 371 PRINTS ATP synthase gamma subunit signature 215 232 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi01g00426 371 PRINTS ATP synthase gamma subunit signature 122 141 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi01g00426 371 PRINTS ATP synthase gamma subunit signature 317 336 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi01g00426 371 Pfam ATP synthase 51 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi01g00426 371 Gene3D - 118 241 - -
Lsi01g00426 371 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 50 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi01g00426 371 PANTHER ATP SYNTHASE GAMMA CHAIN 1 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi01g00426 371 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 1 370 - -
Lsi01g00426 371 Gene3D ATP synthase, gamma subunit, helix hairpin domain 50 117 - -
Lsi01g00426 371 Gene3D ATP synthase, gamma subunit, helix hairpin domain 268 370 - -
Lsi01g00426 371 Coils Coil 51 71 - -
Lsi01g00426 371 Hamap ATP synthase gamma chain [atpG]. 48 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi01g00426 371 CDD F1-ATPase_gamma 51 367 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lsi01g00426 371 ProSitePatterns ATP synthase gamma subunit signature. 356 369 IPR023632 -
Lsi01g00426 371 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 50 370 IPR035968 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00426 Lsi-Chr1:3608956 Lsi02g00117 Lsi-Chr2:957772 1.56E-17 dispersed
Lsi05g00596 Lsi-Chr5:7388893 Lsi01g00426 Lsi-Chr1:3608956 2.68E-152 transposed
Lsi01g00426 Lsi-Chr1:3608956 Lsi02g00599 Lsi-Chr2:5327090 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00426 K02115 - csv:101218747 683.33