Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00447 ATGGACAAAGGATGGGGTCTAACCCTTCGTGATTCTGATCAGTCAATTGGGTTCTTCTCAAACAAGCCACCACCACCGCCGACCACTGTCAATTCCTTTCAAAGAATGTTTCAAGGTTTAGAATTCTCCGGAAAGCTTGGCCGGACTGACGACACCGACGCTACTCCGCCTCTACCCGACGAGAATCGCTTGGCCGTCAACGAGGTAGACTTTTTCTCCGATAAGAAAAGAGTGGTTGATGATCGGGAGGATCAAGAATCCAAACCTTCCACTCATATTATCGCCACCACCGCTGCTATCAATAAAGACGATAAGCCTTTTACCGCTCCCAGAACTGCCTTCAATCTTGTTAATACTGGGTTGCATCTGTTAACTGCTAACACCGGAAGCGATCAATCAACGGTGGATGATGGAATTTCTTCAGATGGTGAAGATAAACGAGCCAAAAACGAGCTAGCGCAGCTTCAAGTGGAGCTTCAGCGTATGAACGCTGAGAATCACAAGCTAAGGGACATGCTAAGCCATGTGAGCAACAACTATAGTTCTTTACAAATGCATCTGTTGACCTTAATGCAACAGCAACAACAAAATCAAGCCTCCGAACCAGCTCATGAACGAGAGATTGGGGAGAAGAAATCAACGGAAATAAAACATGAAGTTGAAAGGGTAATGGTACCAAGACAATTTATGGATCTAGGACCAAGTGGGAACACGAACAACAACACAGGTGAAAGCGATGAATTATTATGTAATTCCTCATCCGATGAAAGAACTCGTTCTGGGTCTCCATTGAACAACAATAATAACAACAACAACAACTCCGAAACCGCCTCCAAAAAAAGAGATCACGCGGAAATCATGGCTCCTTCCGATCACGAAAATTCCAAAAGATCCAACCCCAGAGAAGAAAGCCCCGAATCAGAATCTCAGGGTTGGGGTCCGAACCATAAGCCCCCTCGCTTCAGCTCTTCTAAACCACTCGACCAATCAACCGAAGCCACCATGCGTAAAGCCCGTGTCTCAGTCCGTGCTCGGTCCGAAGCTCCCATGATTTCTGATGGGTGTCAATGGAGAAAATATGGCCAAAAAATGGCTAAAGGAAACCCATGTCCACGAGCCTATTATCGCTGCACAATGGCTGTGGGTTGCCCAGTTCGCAAACAAGTGCAACGTTGTGCTGAAGATAGGAGTATATTGATAACAACATACGAAGGTAACCACAACCACCCACTTCCGCCGGCGGCGATGGCTATGGCGTCAACCACGACTGCGGCGGCTACCATGTTGTTATCAGGGTCTATGTCAAGTGCGGACCATAATTTAATGAACCCAAATTTATTGGCTCGAGCCATACTTCCATGTTCTTCAAGCATGGCTACAATTTCAGCTTCGGCTCCATTTCCAACCATTACATTAGACCTCACTCACACTCCAAACCCATTACAGTTTCAAAGACCCGCCACGGCACCTTTCCACGTCCCATTCCCCGGCGGACAACCACCGTCGGCCGCCCAATTGCCTCAAGTTTTGGGGCAGGCGTTGTATAACAATCAATCAAAATTCTCGGGGCTACAGCTTTCTCATGAGATGGGAGCTAATTCCTCTCATTTGGGTCATCACCAAATTACACAACCGGCGACTCCGGCCCAGCCTGGTGGTGCTTCTTTTGCTGACACGTTGAGTGCCGCCACCGCCGCTATCACCGCCGATCCCAATTTCACCGCCGCTCTCGCCGCCGCTATCTCCTCCATCATCGGCGGAGCTCATTCAAATAATAATAGCAACACCAATACCACCAATAATACTACAACAACAAACAACAACAACAACGGAAGCAGCAACAACAGCAAAATTAGCAGTTTCCCTGGAAATTAA 1875 47.57 MDKGWGLTLRDSDQSIGFFSNKPPPPPTTVNSFQRMFQGLEFSGKLGRTDDTDATPPLPDENRLAVNEVDFFSDKKRVVDDREDQESKPSTHIIATTAAINKDDKPFTAPRTAFNLVNTGLHLLTANTGSDQSTVDDGISSDGEDKRAKNELAQLQVELQRMNAENHKLRDMLSHVSNNYSSLQMHLLTLMQQQQQNQASEPAHEREIGEKKSTEIKHEVERVMVPRQFMDLGPSGNTNNNTGESDELLCNSSSDERTRSGSPLNNNNNNNNNSETASKKRDHAEIMAPSDHENSKRSNPREESPESESQGWGPNHKPPRFSSSKPLDQSTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAAMAMASTTTAAATMLLSGSMSSADHNLMNPNLLARAILPCSSSMATISASAPFPTITLDLTHTPNPLQFQRPATAPFHVPFPGGQPPSAAQLPQVLGQALYNNQSKFSGLQLSHEMGANSSHLGHHQITQPATPAQPGGASFADTLSAATAAITADPNFTAALAAAISSIIGGAHSNNNSNTNTTNNTTTTNNNNNGSSNNSKISSFPGN 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3726678 3730108 - Lsi01G004470.1 Lsi01g00447 653105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00447 624 MobiDBLite consensus disorder prediction 322 336 - -
Lsi01g00447 624 Gene3D WRKY domain 336 413 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi01g00447 624 MobiDBLite consensus disorder prediction 203 225 - -
Lsi01g00447 624 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 61 606 IPR044810 GO:0003700
Lsi01g00447 624 Coils Coil 145 179 - -
Lsi01g00447 624 SUPERFAMILY WRKY DNA-binding domain 344 412 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi01g00447 624 SMART WRKY_cls 351 411 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi01g00447 624 MobiDBLite consensus disorder prediction 587 624 - -
Lsi01g00447 624 MobiDBLite consensus disorder prediction 1 26 - -
Lsi01g00447 624 PANTHER WRKY TRANSCRIPTION FACTOR 31-RELATED 61 606 - -
Lsi01g00447 624 MobiDBLite consensus disorder prediction 533 550 - -
Lsi01g00447 624 MobiDBLite consensus disorder prediction 192 341 - -
Lsi01g00447 624 MobiDBLite consensus disorder prediction 533 555 - -
Lsi01g00447 624 Pfam WRKY DNA -binding domain 353 410 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi01g00447 624 MobiDBLite consensus disorder prediction 276 304 - -
Lsi01g00447 624 MobiDBLite consensus disorder prediction 232 275 - -
Lsi01g00447 624 ProSiteProfiles WRKY domain profile. 346 412 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00447 Lsi-Chr1:3726678 Lsi02g00307 Lsi-Chr2:2652442 8.31E-45 dispersed
Lsi01g00447 Lsi-Chr1:3726678 Lsi11g01439 Lsi-Chr11:22919194 4.15E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24582 PF03106 WRKY 3.60E-24 CL0274 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00447 - - csv:101222214 949.118