Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00449 ATGACGCCCATGGCTTTCCCATTATTATTCCTTTTTTTCCTACCCACAATTATCTCCACGGCCAGCCTCAACAACTACTATAACAAACCAGCTCTTAACCCCATCGACGCATGCTGGCGGAGCAGCCCCAATTGGGCAGCCAACCGCCGCGCCCTGGCCGACTGCGCCGTGGGGTTCGGCAGTGACGCCACGGGAGGCAAATTCGGGTCAATTTACGTGGTCACAGACCCATCGGACGACCCGGAATTTCCGGAACCCGGAACGCTGCGTTTTGGGGTGATTCAAACGCAGCCATTATGGATTGTATTCGCAAGAGATATGGTGATTACCCTTGAAAGAGAACTGATGGTGAACAGCTTTAAGACCATAGACGGCCGAGGGGCAAAAGTGGAAATTAGCAATGGGCCATGTATTACCATTCAAGACGTGAGCCACGTCATAATCCACGGCATTAGCATCCATGATTGTAAGCCGGGGAAGCCCGGGCGCGTGAGGAGCACCGTCACTCACTGTGGGGACCGCCAAGAGTCGGACGGTGACGCCATTTCTATATTCAGTTCTTCCCATATTTGGATCGACCATTGCTATTTAGCTCGATGCACTGATGGACTCATTGACGTCATCCATGCGTCCACTGCCGTCACCATCTCCAACAATTACTTCACTCAACATAATAAAGTGATCCTTCTTGGTCACAACGACGACTTTACAGAGGATAGAATCATGAGAGTGACGGTAGCATTCAACCGTTTTGGCGCTGGGCTTGTTCAAAGAATGCCCAGGGTGAGATTTGGGTATGCCCATGTTGCCAATAATTGGTATAACAAGTGGGAAATAGAGGTTTATGCGAATGGATGGAAGAAATGGAAATGGAGATCTTCAAATGATGTGTTTTTGAATGGGGCTTATTTCATCCCAACTGGGTGGGGATCTTGTGCGCCGTTCTACACTCGAGCTCAAGCATTTGCTGTTGCTCATGGCTCTTTGGCTCCTCTTTTGACTGCAACCGCAGGCACTTTGACTTGTGTTCTTGGTAAACCTTGTTGA 1047 49.57 MTPMAFPLLFLFFLPTIISTASLNNYYNKPALNPIDACWRSSPNWAANRRALADCAVGFGSDATGGKFGSIYVVTDPSDDPEFPEPGTLRFGVIQTQPLWIVFARDMVITLERELMVNSFKTIDGRGAKVEISNGPCITIQDVSHVIIHGISIHDCKPGKPGRVRSTVTHCGDRQESDGDAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYFTQHNKVILLGHNDDFTEDRIMRVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWEIEVYANGWKKWKWRSSNDVFLNGAYFIPTGWGSCAPFYTRAQAFAVAHGSLAPLLTATAGTLTCVLGKPC 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3750366 3757212 - Lsi01G004490.1 Lsi01g00449 653107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00449 348 Gene3D - 32 341 IPR012334 -
Lsi01g00449 348 SMART amb_all 106 304 IPR002022 -
Lsi01g00449 348 Pfam Pectate lyase 115 276 IPR002022 -
Lsi01g00449 348 PANTHER PECTATE LYASE 283 347 - -
Lsi01g00449 348 PANTHER PECTATE LYASE 23 279 - -
Lsi01g00449 348 PRINTS Pollen allergen Amb family signature 114 130 IPR018082 -
Lsi01g00449 348 PRINTS Pollen allergen Amb family signature 78 103 IPR018082 -
Lsi01g00449 348 PRINTS Pollen allergen Amb family signature 55 72 IPR018082 -
Lsi01g00449 348 PRINTS Pollen allergen Amb family signature 178 199 IPR018082 -
Lsi01g00449 348 PRINTS Pollen allergen Amb family signature 258 277 IPR018082 -
Lsi01g00449 348 PANTHER PECTATE LYASE 18-RELATED 283 347 IPR045032 GO:0030570
Lsi01g00449 348 PANTHER PECTATE LYASE 18-RELATED 23 279 IPR045032 GO:0030570
Lsi01g00449 348 SUPERFAMILY Pectin lyase-like 33 339 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00449 Lsi-Chr1:3750366 Lsi02g00456 Lsi-Chr2:3822873 5.09E-126 dispersed
Lsi01g01390 Lsi-Chr1:12042030 Lsi01g00449 Lsi-Chr1:3750366 2.42E-42 dispersed
Lsi01g00449 Lsi-Chr1:3750366 Lsi02g00573 Lsi-Chr2:5129704 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00449 K01728 - csv:101210816 621.313