Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00456 ATGGAGGGTCCAAGTGGGAGTTCTTCAGGAGGTATGATGAATTTTGGAGATCAAAATAATAGTAATAATAATAATAATAATAACAACAACAATAATAGTAATGGGTTATGTTCGATGATGATGATGATGCCATTAATCTCCTCCTCTTCTCAACAAGGTGGAGATGGTTCATGTACTCCATTTCTTCCTCTTCCTCTTAATTACAACAACAATAATACTTCCAATTCTATTTGTAATTACTTCATGGATGATCAAAACAACGACGAGGGTAGTAATTCTTGTTGTGAAGTGAAGGCTAAAATTATGGCTCATCCTCACTACCACCGTCTTCTCGCTGCCTATGTCAATTGTCGAAAGGTGGGAGCGCCGCCGGAAGTGGTGGCTAGGCTTGAAGAAGCATGTGCAAGTGCAGCAACAATGAGTGGTAATAGTAGTGGGTGTATTGGGGAAGATCCAGCCCTCGATCAGTTCATGGAAGCTTACTGTGAAATGCTCACTAAATATGAACAAGAACTTTCTAAACCCTTTAGAGATGCCATGCTTTTTCTTCAACGAATTGACTCCCAATTCAAAGCCCTCTCTATCTCTTCCTCTCACCTCCCTGCTTGTGGCGAAGCATTTGATAGGAACGGATCATCTGAAGAGGAAGTTGATATCAATGGGAACTCGATCGACCCCCAGGCGGAAGACCGTGAACTGAAAGGTCAGCTGCTGCGCAAATACAGTGGATACTTAGGCAGTCTGAAGCAAGAATTCATGAAGAAAAGGAAGAAAGGGAAGCTACCTAAGGAAGCCAGACAACAACTCCTGGATTGGTGGAGCAGACATTACAAATGGCCTTATCCATCTGAATCACAGAAGCTAGCTTTAGCTCAATCAACTGGGTTAGATCAAAAGCAAATCAACAACTGGTTCATCAATCAAAGAAAAAGACACTGGAAACCATCAGAAGATATGCAATTTGTGGTGATGGATGCTGCTCATCCACAGTATTACATGGACACTGTCCTGGGGAATCCTTTCCCCTTGGATATCTCTCCTACTCTACTTTGA 1053 42.17 MEGPSGSSSGGMMNFGDQNNSNNNNNNNNNNNSNGLCSMMMMMPLISSSSQQGGDGSCTPFLPLPLNYNNNNTSNSICNYFMDDQNNDEGSNSCCEVKAKIMAHPHYHRLLAAYVNCRKVGAPPEVVARLEEACASAATMSGNSSGCIGEDPALDQFMEAYCEMLTKYEQELSKPFRDAMLFLQRIDSQFKALSISSSHLPACGEAFDRNGSSEEEVDINGNSIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPQYYMDTVLGNPFPLDISPTLL 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3790826 3794881 - Lsi01G004560.1 Lsi01g00456 653114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00456 350 SUPERFAMILY Homeodomain-like 254 328 IPR009057 -
Lsi01g00456 350 Pfam KNOX1 domain 97 135 IPR005540 GO:0003677|GO:0005634
Lsi01g00456 350 Pfam KNOX2 domain 147 193 IPR005541 GO:0003677|GO:0005634
Lsi01g00456 350 Pfam Homeobox KN domain 272 311 IPR008422 GO:0003677|GO:0006355
Lsi01g00456 350 SMART HOX_1 254 319 IPR001356 GO:0003677
Lsi01g00456 350 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 24 339 - -
Lsi01g00456 350 MobiDBLite consensus disorder prediction 1 33 - -
Lsi01g00456 350 CDD homeodomain 264 316 IPR001356 GO:0003677
Lsi01g00456 350 Gene3D - 257 319 - -
Lsi01g00456 350 Pfam ELK domain 232 253 IPR005539 GO:0003677
Lsi01g00456 350 SMART ELK_2 232 253 IPR005539 GO:0003677
Lsi01g00456 350 PANTHER - 24 339 - -
Lsi01g00456 350 SMART KNOX2_2 144 195 IPR005541 GO:0003677|GO:0005634
Lsi01g00456 350 ProSitePatterns 'Homeobox' domain signature. 290 313 IPR017970 GO:0000981|GO:0006355
Lsi01g00456 350 ProSiteProfiles 'Homeobox' domain profile. 252 315 IPR001356 GO:0003677
Lsi01g00456 350 SMART KNOX1_2 95 139 IPR005540 GO:0003677|GO:0005634
Lsi01g00456 350 ProSiteProfiles ELK domain profile. 232 252 IPR005539 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00456 Lsi-Chr1:3790826 Lsi04g01445 Lsi-Chr4:22203808 3.34E-79 dispersed
Lsi11g00638 Lsi-Chr11:6717313 Lsi01g00456 Lsi-Chr1:3790826 6.58E-70 transposed
Lsi01g00456 Lsi-Chr1:3790826 Lsi11g01422 Lsi-Chr11:22788484 1.84E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24583 PF03791 KNOX2 5.40E-20 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00456 - - csv:101211566 577.4