Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00468 ATGGCGACCTCATGTTTTGGTTCACTTAGGATTCGTAAATCGAAGAGCAAACCGTTATCAACCCCTTCCTCGTTGAAATCCCAGATGAATTCTGAAATGGAAAATATGGAAAGGAGAAGATTTGATAGTTTGGAATCGTGGTCAATGATCCTAGAGTCTGAAAATGTGGAAACTTGGGAGACATCAAAGGAGGATCAGGAGGAGTGGACAGCTGATCTATCTCAACTCTTCATTGGTAACAAATTCGCCTCTGGTGCTCACAGTCGGATATACCGTGGAATTTACAAGCAGAGAGCCGTTGCTGTGAAGATGGTGAGAATTCCAAACCAAAAGGAGGAAACAAGAGCCAAACTCGAGCAACAGTTCAAGTCTGAAGTTGCCTTGCTTTCTCGTCTCTTTCATCCCAACATAGTTCAGTTCATTGCAGCCTGTAAAAAGCCACCTGTATACTGCATAATTACAGAGTATATGTCACAAGGAACTCTGAGGATGTATCTTAACAAGAAAGAGCCATATTCACTCTCAACAGAAACAATATTGAGGTTAGCTCTTGACATATCAAGAGGAATGGAATACCTTCATTCCCAAGGAGTAATCCACAGAGACCTCAAATCAAACAACTTGCTTCTAAACGATGAAATGAGAGTAAAAGTAGCTGATTTCGGAACCTCCTGTCTCGAAACACAGTGCCGAGAATCAAAAGGGAACATGGGAACTTACCGATGGATGGCGCCGGAGATGATCAAGGAGAAGCCTTATACTCGCAAAGTTGATGTCTACAGCTTTGGAATTGTGCTGTGGGAGCTCACCACGGCTCTGCTTCCCTTTCAAGGGATGACCCCCGTGCAAGCTGCCTTTGCCGTCGCCGAGAAGAATGAGAGGCCACCATTACCGGCGAGTTGTCAGCCGGCACTAGCCCACCTGATAAAGCGGTGTTGGGCCGCGAATCCGTCGAAGCGGCCGGATTTTAGCGACATTGTAGTGGCTTTGGAGAAATACGACGAGTGTGTGAAAGAGGGTCTTCCTCTTGCACACCATAGAAGATTGGTAAACCGAAACGCCATTATTGAACGCTTGAAAGCTTGCGCCTCAACCAGCTCTTCAATCCCTGTACATGCCTGA 1122 45.9 MATSCFGSLRIRKSKSKPLSTPSSLKSQMNSEMENMERRRFDSLESWSMILESENVETWETSKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPNQKEETRAKLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETQCRESKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHLIKRCWAANPSKRPDFSDIVVALEKYDECVKEGLPLAHHRRLVNRNAIIERLKACASTSSSIPVHA 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3908545 3912491 + Lsi01G004680.1 Lsi01g00468 653126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00468 373 ProSiteProfiles Protein kinase domain profile. 76 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00468 373 MobiDBLite consensus disorder prediction 13 32 - -
Lsi01g00468 373 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 361 - -
Lsi01g00468 373 Pfam Protein tyrosine and serine/threonine kinase 78 329 IPR001245 GO:0004672|GO:0006468
Lsi01g00468 373 Gene3D Phosphorylase Kinase; domain 1 65 158 - -
Lsi01g00468 373 CDD STKc_MAP3K-like 83 327 - -
Lsi01g00468 373 Gene3D Transferase(Phosphotransferase) domain 1 159 354 - -
Lsi01g00468 373 MobiDBLite consensus disorder prediction 14 31 - -
Lsi01g00468 373 PRINTS Tyrosine kinase catalytic domain signature 238 248 IPR001245 GO:0004672|GO:0006468
Lsi01g00468 373 PRINTS Tyrosine kinase catalytic domain signature 154 167 IPR001245 GO:0004672|GO:0006468
Lsi01g00468 373 PRINTS Tyrosine kinase catalytic domain signature 301 323 IPR001245 GO:0004672|GO:0006468
Lsi01g00468 373 PRINTS Tyrosine kinase catalytic domain signature 192 210 IPR001245 GO:0004672|GO:0006468
Lsi01g00468 373 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672|GO:0006468
Lsi01g00468 373 SUPERFAMILY Protein kinase-like (PK-like) 51 327 IPR011009 -
Lsi01g00468 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Lsi01g00468 373 SMART serkin_6 76 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00468 373 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 9 361 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00468 Lsi02g00644 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00468 Lsi-Chr1:3908545 Lsi02g00366 Lsi-Chr2:3140797 2.18E-137 dispersed
Lsi03g01625 Lsi-Chr3:27358811 Lsi01g00468 Lsi-Chr1:3908545 1.98E-38 dispersed
Lsi06g01545 Lsi-Chr6:25801745 Lsi01g00468 Lsi-Chr1:3908545 2.14E-57 dispersed
Lsi10g01454 Lsi-Chr10:18624418 Lsi01g00468 Lsi-Chr1:3908545 5.10E-37 dispersed
Lsi11g01700 Lsi-Chr11:25171808 Lsi01g00468 Lsi-Chr1:3908545 6.78E-06 transposed
Lsi01g00468 Lsi-Chr1:3908545 Lsi02g00547 Lsi-Chr2:4789698 3.52E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83254 PF07714 PK_Tyr_Ser-Thr 5.30E-68 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00468 - - cmo:103484647 734.947