Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00488 ATGCAAGCATCTCAGAATCGGCAGGCTTCATCTGTGATTCATGAGATGTATCAACAGTCTGTGCAAGAGATGGATCCTTACTATTTATCTCACTTTCACGTATTGGGAAACCATGTCTCTCCTGACACAAGCAGCCAGGGAAACAGTGTTAACTTCTCTTCCTGTAAGGATCAGTTTTTTACTCTGGAATCATTCCCGGCTACTGCTGATCTGAGTGCCTGTAATTCCCCTTCTGCTGTGAGTGTTCTGTCTTCCAGGAGCCCCTTCTCACCTCAAGGTTCTCAATCATGCTCTTCAGATCAACACCATTCCTTTGACAACACATGCGGATCACCACTAAGTGGATGCTCTGTAACTGACGATGATAACGAATTAAAGCACAAGCTGAAAGAATTAGAAATTTCTTTGCTGGGGCCTGAATCTGATATTGTGGATAGCTGCTATTGTTCTTTCAGGGGCGGGGTGCATCGAGATGCTTCAATGGCAAGGCGGAACTGGAATCAAGTGGTTGAAATGATTCCTAGACTAAGTCTTCAAGACACGCTTATCCATTGTGCCCAAGCGATTCATGATTCCGATCTAAACGTGGCAACACTATTTATGGATGTTTTAGGGCAGATGGTTTCTGTCTCTGGTGATCCAGCCCAGAGGTTGGGGGCTTACTTGTTGGAAGGACTTAGAGCGAGGTTGGAACGATCTGGGAGTGCAATATACAAGGCCTTAAAGTGTGAAGAGCCAACAAGCTCTGAACTAATGTCATATATGTCTATTCTATTCCAGATCTGCCCGTACTTCAAATTTGGTTACACTTCTGCTAATGCTGTCATTTGGGAGGCCATGATAAATGAACCAATAATCCACATTATTGATTTTCAAATCGCACAGGGTAGTCAGTATATTCCTCTCATCCAGGATCTTGCCAATCGGCCTGGTGGACCCCCGGTTCTTCTTCGCATTACAGGTGCGGATGATTCCCAATCAGCTCATGCTCGGGGAGGGGGACTTCAAATTGTGGGACAGAAGTTAGCTCAGCTGGCTCAATCAAAAGGAATTCCCTTCCAATTTCATGCGGCTGCAATGTCCGGTTGTGAGGTCGAACGCAGTAATCTTAGAATACGACCCGGAGAAGCATTGGCCGTAAATTTTCCATACGCCTTGCACCACATGCCAGATGAGAGTGTGAGCACACAGAATCACCGAGACCGGCTTCTAAGGCTGGTTAAGAGTCTGTCACCGAAAGTAGTAACCATTGTTGAGCAGGAATCCAACACCAACACATCTCCATTCCTCCTTCGTTTTATAGAGACACTGGATTATTACACTGCTATGTTCGAGTCAATAGATGTAGCTCGTTCAAGAGACGACAAGCAGCGAATCAGGGCGGAGCAACACTGTGTGGCCCGAGACATAGTAAACATGGTAGCTTGTGAGGGCTTTGAAAGGGTAGAACGCCATGAACTCCTTGGCAAGTGGAGGATGAGAATGAGAATGGCTGGTTTCACTCCATATCCAATGAGCTCATCCGTAACTGGAGCTGTCAAGAATATGTTAAGGGATTTCAACGAGAACTACAGACTCCAAGAAGTGGATGGGGCTATCTACCTTGGCTGGAAAAACAGAGCAATGGCAACATCCTCTGCATGGAGATGA 1650 46.0 MQASQNRQASSVIHEMYQQSVQEMDPYYLSHFHVLGNHVSPDTSSQGNSVNFSSCKDQFFTLESFPATADLSACNSPSAVSVLSSRSPFSPQGSQSCSSDQHHSFDNTCGSPLSGCSVTDDDNELKHKLKELEISLLGPESDIVDSCYCSFRGGVHRDASMARRNWNQVVEMIPRLSLQDTLIHCAQAIHDSDLNVATLFMDVLGQMVSVSGDPAQRLGAYLLEGLRARLERSGSAIYKALKCEEPTSSELMSYMSILFQICPYFKFGYTSANAVIWEAMINEPIIHIIDFQIAQGSQYIPLIQDLANRPGGPPVLLRITGADDSQSAHARGGGLQIVGQKLAQLAQSKGIPFQFHAAAMSGCEVERSNLRIRPGEALAVNFPYALHHMPDESVSTQNHRDRLLRLVKSLSPKVVTIVEQESNTNTSPFLLRFIETLDYYTAMFESIDVARSRDDKQRIRAEQHCVARDIVNMVACEGFERVERHELLGKWRMRMRMAGFTPYPMSSSVTGAVKNMLRDFNENYRLQEVDGAIYLGWKNRAMATSSAWR 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4030838 4032487 - Lsi01G004880.1 Lsi01g00488 653146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00488 549 Pfam GRAS domain family 179 549 IPR005202 -
Lsi01g00488 549 PANTHER SCARECROW-LIKE PROTEIN 13 18 548 IPR030005 -
Lsi01g00488 549 ProSiteProfiles GRAS family profile. 169 549 IPR005202 -
Lsi01g00488 549 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 18 548 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00488 Lsi-Chr1:4030838 Lsi05g00522 Lsi-Chr5:6546210 0 dispersed
Lsi01g00488 Lsi-Chr1:4030838 Lsi10g00057 Lsi-Chr10:977937 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24585 PF03514 GRAS 3.10E-125 CL0063 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00488 - - csv:101207883 1007.28