Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00506 ATGGCCTCAATTGCTGGTTCCAAAGCTTCCTCAAATCAGCCACAAAAACCAGCTAATGGTGAAATGGCTAATGGGAAGGATACCGGGCTCTTGCCTCCCCAGATTTCAAAGTTAAGTAAACCTGCATCAGTTACTTCTGACCAGTCTAAATCAGTAAAGAGTATCTCAAAGAAGGATATGGAAATATCTTCCGACAAGAAGTCACCAGTATCGAATCAAAATGGATCTGCTAAGTTGTTGACTGAAAAATTTAATTTCAGCATATCATCACCTGGTCTGAAACAAACATCAACTGAAGTAGATTCCCTTCGCGATGAAGATAAATGCTCACCTGGAAGCTCTCTAGACCAAGAGAAGAAAACATCAGAATATGGAAGTGTAAAGAGCAGTTCTTTTTCCGGCAAAGTAAGTGATGGGACTAGCTGTCTTGCCAAGACCAGTGGAAGTACAAAGGTTAGCGACCATGGTAACTTTGTTGAGAGTGGAAAGAGCAGTATATATAGAGGGAGCACAAGCAGTGATGTAAGCGATGAGAGCTCTTGCAGTAGTTTTAGTAGTAGTATCAGTAAACCTCACAAAGCAAATGATTTGAGATGGGAGGCCATTCAAGTTGTCCGTGCAAAAGATGGGGCAATGGGATTAAGTCATTTTAGACTTCTGAAGAAGTTGGGTTGTGGGGATATCGGGAGTGTCTATCTCTCTGAGTTAAGGGGAACCAAATGCCATTTTGCAATGAAGGTTATGGATAAAAATACTCTAGCGAGTCGTAAAAAGTTGCTTCGTGCACAGACAGAAAGAGAAATACTTCAATCTCTTGATCACCCCTTCCTTCCAACGTTATACACCCACTTTGAGACAGAAAAATTCTCATGCTTGGTGATGGAGTTCTGCCCTGGAGGAGACTTGCACACTCTAAGGCAGAGGCAACCAGGGAAGCATTTTCCCGAGCAGGCAGTGAAATTCTATGTAGCAGAGGTTCTTCTTGCACTGGAATACCTGCACATGCTTGGGATTGTGTACCGTGACCTTAAGCCAGAAAATGTTCTTGTGAGGGAAGACGGACACATAATGCTTTCAGATTTTGACCTATCTCTCCGTTGTGCTGTTAATCCGACTCTTGTCAAAAATCTCTCTGCAGAGTCAGAGGCTTTAAGAAAGAACACAGGTTACTGCGTGCAGCCTGCTTGCATTGAGCCTTCCTGCATCCAACCATCTTGTGTAGTTCCTACAACCTGCTTCTCACCTCGTCTCTTTTCTAGTAAGTCAAAGAAGGAACGTAAACCCAAAATTGATATGGGAAATCAGGTCAGCCCATTGCCAGAGCTCATTGCAGAACCAACCGATGCCCGATCCATGTCTTTCGTAGGAACTCATGAGTACTTGGCACCTGAGATAATCAAGGGTGAAGGCCATGGAAGTGCTGTAGATTGGTGGACTTTTGGAATTTTTCTATACGAGCTACTATTTGGTAAAACTCCTTTTAAGGGATCTGGAAATCGAGCTACATTATTCAACATTGTCGGTCAGCCACTTCGGTTTCCAGATGCACCAGTTGTGAGTTTTGCTGCAAAGGATCTGATAAGAGGATTGCTGGTGAAGGAGCCACAACAAAGATTGGCTTATAAACGTGGAGCAACTGAGATCAAGCAGCATCCTTTCTTTGAAGGTGTAAATTGGGCATTAATACGTTGTGCTACTCCTCCCGAAATCCCAAGGCCGGTTGAGATTGAGAGAATACCACATGCAGTGGCGTCTACCAGTGAAAAGGCCGCAGCTATTGCTGCAGCTGCTGCAGATAAAAAAGCTTCCGATAATTATCTTGAGTTTGATTTCTTTTAG 1839 43.45 MASIAGSKASSNQPQKPANGEMANGKDTGLLPPQISKLSKPASVTSDQSKSVKSISKKDMEISSDKKSPVSNQNGSAKLLTEKFNFSISSPGLKQTSTEVDSLRDEDKCSPGSSLDQEKKTSEYGSVKSSSFSGKVSDGTSCLAKTSGSTKVSDHGNFVESGKSSIYRGSTSSDVSDESSCSSFSSSISKPHKANDLRWEAIQVVRAKDGAMGLSHFRLLKKLGCGDIGSVYLSELRGTKCHFAMKVMDKNTLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVNPTLVKNLSAESEALRKNTGYCVQPACIEPSCIQPSCVVPTTCFSPRLFSSKSKKERKPKIDMGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNIVGQPLRFPDAPVVSFAAKDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPRPVEIERIPHAVASTSEKAAAIAAAAADKKASDNYLEFDFF 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4134269 4138148 - Lsi01G005060.1 Lsi01g00506 653164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00506 612 ProSiteProfiles Protein kinase domain profile. 217 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00506 612 MobiDBLite consensus disorder prediction 115 140 - -
Lsi01g00506 612 Pfam Protein kinase domain 451 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00506 612 Pfam Protein kinase domain 218 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00506 612 CDD STKc_phototropin_like 215 577 - -
Lsi01g00506 612 MobiDBLite consensus disorder prediction 99 114 - -
Lsi01g00506 612 SMART serkin_6 217 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00506 612 MobiDBLite consensus disorder prediction 89 140 - -
Lsi01g00506 612 Gene3D Transferase(Phosphotransferase) domain 1 301 368 - -
Lsi01g00506 612 MobiDBLite consensus disorder prediction 1 76 - -
Lsi01g00506 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 338 350 IPR008271 GO:0004672|GO:0006468
Lsi01g00506 612 SUPERFAMILY Protein kinase-like (PK-like) 192 580 IPR011009 -
Lsi01g00506 612 PANTHER FLIPPASE KINASE 1-RELATED 5 612 - -
Lsi01g00506 612 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 5 612 - -
Lsi01g00506 612 MobiDBLite consensus disorder prediction 1 19 - -
Lsi01g00506 612 Gene3D Phosphorylase Kinase; domain 1 215 300 - -
Lsi01g00506 612 Gene3D Transferase(Phosphotransferase) domain 1 448 572 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00506 Lsi-Chr1:4134269 Lsi03g01351 Lsi-Chr3:24384562 0 dispersed
Lsi07g00832 Lsi-Chr7:9297927 Lsi01g00506 Lsi-Chr1:4134269 3.72E-111 transposed
Lsi10g01047 Lsi-Chr10:14698517 Lsi01g00506 Lsi-Chr1:4134269 1.94E-73 transposed
Lsi11g00302 Lsi-Chr11:3127972 Lsi01g00506 Lsi-Chr1:4134269 2.50E-128 transposed
Lsi01g00506 Lsi-Chr1:4134269 Lsi02g01169 Lsi-Chr2:14326633 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83255 PF00069 Pkinase 6.50E-38 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00506 K08286 - csv:101209748 1107.82