Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00519 ATGTTTCCCAGACTTGTTAATCCCGACGGAGATATCCAGATCCATGGCCCCCGTGGTTCTGTTGCTTCCGACCTCACCCACAGTCACCGAGGAGATCCTTGTCTTGTTTTGACTTCAGATCCGAAACCTCGCCTCCGCTGGACTGCCGATCTTCACGAGCGATTCGTCGATGCCGTCACTCAGCTCGGTGGTGCTGGCAAAGCTACTCCAAAAGCAATAATGCGAACAATGAATGTGAAAGGACTGACTCTCTTCCATCTGAAGAGCCACCTCCAGAAATACAGATTAGGTAAGCAATCAGGAAAGGATATGGGTGAGGCATCTAAAGATGGTGCATATCTTTTAGAAAGTCCAAGTACGAATAATTTCTCTCCTGACTTGCCAATTTCTGAAATGGCCGATGGTTATGAAGTCAAGGAGGCATTAAGAGCGCAAATGGAAGTGCAAAGTAAATTACATCTGCAAGTTGAGGCAGAGAAGCACCTACGAATTCGTCAGGATGCCGAACGAAGATATTTGGCCATGCTTGAGAGAGCTTGTAAAATGCTTGCAGATCAATTCATTGGAGGCGCAGTTTCAGACTCAGACAGCAAGAAGTCTCAAGGACAGGATCGTAAGAGCCCGAGAAGTTCCTCCATTGACCCACTTGGTTTCTATGCTTCACAATCGCAAGAGATGGAAAGGGTGAATGGCATGGAAGAAGTGCAGGCTAATCTTCCTTGCCAAAGGGCTGATTGTTCAACCGAAAGCTGCCTAACCTCCAACGAGAGTCCCGGGGGATTGGTGATGGAAAAATCTCCTGTTGCAAGCAAGAAAAACATGGTTAACTTGGATTCAGCAACTGCATCTTTGAATTGGGGTGAAGCTAAGGAAAGAATACAAGATGCTAACATCATCCAAGTTAACCATCATGGCGTATCTGGATGCGACATGTGGGGATGA 942 46.71 MFPRLVNPDGDIQIHGPRGSVASDLTHSHRGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGAGKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDMGEASKDGAYLLESPSTNNFSPDLPISEMADGYEVKEALRAQMEVQSKLHLQVEAEKHLRIRQDAERRYLAMLERACKMLADQFIGGAVSDSDSKKSQGQDRKSPRSSSIDPLGFYASQSQEMERVNGMEEVQANLPCQRADCSTESCLTSNESPGGLVMEKSPVASKKNMVNLDSATASLNWGEAKERIQDANIIQVNHHGVSGCDMWG 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4238229 4243824 + Lsi01G005190.1 Lsi01g00519 653177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00519 313 Gene3D - 41 99 - -
Lsi01g00519 313 MobiDBLite consensus disorder prediction 191 217 - -
Lsi01g00519 313 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677
Lsi01g00519 313 MobiDBLite consensus disorder prediction 1 26 - -
Lsi01g00519 313 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 18 307 - -
Lsi01g00519 313 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Lsi01g00519 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 18 307 IPR044848 GO:0003700
Lsi01g00519 313 Pfam MYB-CC type transfactor, LHEQLE motif 137 182 IPR025756 -
Lsi01g00519 313 Pfam Myb-like DNA-binding domain 45 95 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00519 Lsi-Chr1:4238229 Lsi05g01838 Lsi-Chr5:25663614 1.76E-53 dispersed
Lsi01g00519 Lsi-Chr1:4238229 Lsi01g00520 Lsi-Chr1:4247675 8.51E-32 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24587 PF00249 Myb_DNA-binding 8.40E-06 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00519 - - csv:105435941 583.563