Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00520 ATGTTTCAACAACAGAGTGCTCATAATTCAAGCTTTCTTCAAAACGACTCATTAGTTCGTGATAAGCATATACCTTCTGATGCCTGCTCGATGGACCCCACGAATGGAAATAATGGTACCAGCAACAACCCAAATTTGGCCTCAAAGCAGAGACTGCGATGGACACATGATCTTCACGAACGATTTGTTAATGCAGTGGCACAACTTGGTGGTCCAGATCGTGCTACACCCAAAGGCGTCCTTAGAGTAATGGGTGTTCAAGGTTTAACAATATACCACGTCAAGAGCCACCTACAGAAATATCGACTTGCAAAATACCTTCCCGACTCCTCATCTGATGGTAGTGACATTCACCAAGTCATTCACCCGTTTGTTGTATTGTGGATGCAAGGGAAAAAGGCTGACAAGAAGGATTCTAGTGACATTCTATCGAACATTGATGGCTCATCAAGAATGCAAATTACTGAAGCACTTAAGCTGCAGATGGAGGTCCAGAAGCGACTGCATGAACAATTGGAGGTGCAGAGACAGCTACAGTTACGGATTGAAGCTCAAGGCAAGTATCTAAAGAAGATAATTGAAGAGCAACAAAAACTTAGTGGGGTTCTTTCAGGAGCTCCAGTTGCCTCGGCCTTTTCAGCTCCTGCTTCTGGTGATAACTGCCCAGAAACTGATAAAAATGACCCTCCAACACCTGCACCCACATCCGAGTTTCCTCGCCAAGAGAAAGCATCAAAGGAACGTGCCCAAGCGAAGAGTGTCTCTATTGATGATTCTTTCTCGTCTCATCACGAACCATTGACGCCAGATTCTGGTTGCCATAGCTCCCCAAGTGAGAGTCCAAGACCAGTGAAGCAGCAAAGACAGTACAGGGATGGTGCATTTGCCAAATCAGAGATGATACTTGCACATCAGATACTGGAGTCAAGTTTAAACTCCACTCACAAGGAATCACGCTCTGTTTTTCCAGCCAGGGAAAAGTTTGATCCTTCATCTGGAATATCAATAGGGGACGACGACCAGTTAGACTAA 1032 44.96 MFQQQSAHNSSFLQNDSLVRDKHIPSDACSMDPTNGNNGTSNNPNLASKQRLRWTHDLHERFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGSDIHQVIHPFVVLWMQGKKADKKDSSDILSNIDGSSRMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQKLSGVLSGAPVASAFSAPASGDNCPETDKNDPPTPAPTSEFPRQEKASKERAQAKSVSIDDSFSSHHEPLTPDSGCHSSPSESPRPVKQQRQYRDGAFAKSEMILAHQILESSLNSTHKESRSVFPAREKFDPSSGISIGDDDQLD 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4247675 4251767 + Lsi01G005200.1 Lsi01g00520 653178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00520 343 MobiDBLite consensus disorder prediction 23 46 - -
Lsi01g00520 343 MobiDBLite consensus disorder prediction 308 343 - -
Lsi01g00520 343 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 3 116 - -
Lsi01g00520 343 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 130 340 - -
Lsi01g00520 343 Pfam Myb-like DNA-binding domain 52 102 IPR001005 -
Lsi01g00520 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 106 IPR017930 -
Lsi01g00520 343 Coils Coil 155 175 - -
Lsi01g00520 343 SUPERFAMILY Homeodomain-like 48 103 IPR009057 -
Lsi01g00520 343 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 49 104 IPR006447 GO:0003677
Lsi01g00520 343 MobiDBLite consensus disorder prediction 30 46 - -
Lsi01g00520 343 Pfam MYB-CC type transfactor, LHEQLE motif 152 198 IPR025756 -
Lsi01g00520 343 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 3 116 IPR044848 GO:0003700
Lsi01g00520 343 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 130 340 IPR044848 GO:0003700
Lsi01g00520 343 MobiDBLite consensus disorder prediction 254 284 - -
Lsi01g00520 343 Gene3D - 48 107 - -
Lsi01g00520 343 MobiDBLite consensus disorder prediction 213 296 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00520 Lsi-Chr1:4247675 Lsi11g01586 Lsi-Chr11:24259033 1.18E-43 dispersed
Lsi03g01231 Lsi-Chr3:22888679 Lsi01g00520 Lsi-Chr1:4247675 9.66E-17 dispersed
Lsi01g00519 Lsi-Chr1:4238229 Lsi01g00520 Lsi-Chr1:4247675 8.51E-32 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24588 PF00249 Myb_DNA-binding 1.30E-07 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00520 - - cmax:111478721 526.939