Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00520 ATGTTTCAACAACAGAGTGCTCATAATTCAAGCTTTCTTCAAAACGACTCATTAGTTCGTGATAAGCATATACCTTCTGATGCCTGCTCGATGGACCCCACGAATGGAAATAATGGTACCAGCAACAACCCAAATTTGGCCTCAAAGCAGAGACTGCGATGGACACATGATCTTCACGAACGATTTGTTAATGCAGTGGCACAACTTGGTGGTCCAGATCGTGCTACACCCAAAGGCGTCCTTAGAGTAATGGGTGTTCAAGGTTTAACAATATACCACGTCAAGAGCCACCTACAGAAATATCGACTTGCAAAATACCTTCCCGACTCCTCATCTGATGGTAGTGACATTCACCAAGTCATTCACCCGTTTGTTGTATTGTGGATGCAAGGGAAAAAGGCTGACAAGAAGGATTCTAGTGACATTCTATCGAACATTGATGGCTCATCAAGAATGCAAATTACTGAAGCACTTAAGCTGCAGATGGAGGTCCAGAAGCGACTGCATGAACAATTGGAGGTGCAGAGACAGCTACAGTTACGGATTGAAGCTCAAGGCAAGTATCTAAAGAAGATAATTGAAGAGCAACAAAAACTTAGTGGGGTTCTTTCAGGAGCTCCAGTTGCCTCGGCCTTTTCAGCTCCTGCTTCTGGTGATAACTGCCCAGAAACTGATAAAAATGACCCTCCAACACCTGCACCCACATCCGAGTTTCCTCGCCAAGAGAAAGCATCAAAGGAACGTGCCCAAGCGAAGAGTGTCTCTATTGATGATTCTTTCTCGTCTCATCACGAACCATTGACGCCAGATTCTGGTTGCCATAGCTCCCCAAGTGAGAGTCCAAGACCAGTGAAGCAGCAAAGACAGTACAGGGATGGTGCATTTGCCAAATCAGAGATGATACTTGCACATCAGATACTGGAGTCAAGTTTAAACTCCACTCACAAGGAATCACGCTCTGTTTTTCCAGCCAGGGAAAAGTTTGATCCTTCATCTGGAATATCAATAGGGGACGACGACCAGTTAGACTAA 1032 44.96 MFQQQSAHNSSFLQNDSLVRDKHIPSDACSMDPTNGNNGTSNNPNLASKQRLRWTHDLHERFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGSDIHQVIHPFVVLWMQGKKADKKDSSDILSNIDGSSRMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQKLSGVLSGAPVASAFSAPASGDNCPETDKNDPPTPAPTSEFPRQEKASKERAQAKSVSIDDSFSSHHEPLTPDSGCHSSPSESPRPVKQQRQYRDGAFAKSEMILAHQILESSLNSTHKESRSVFPAREKFDPSSGISIGDDDQLD 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4247675 4251767 + Lsi01G005200.1 Lsi01g00520 653178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00520 343 MobiDBLite consensus disorder prediction 23 46 - -
Lsi01g00520 343 MobiDBLite consensus disorder prediction 308 343 - -
Lsi01g00520 343 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 3 116 - -
Lsi01g00520 343 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 130 340 - -
Lsi01g00520 343 Pfam Myb-like DNA-binding domain 52 102 IPR001005 -
Lsi01g00520 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 106 IPR017930 -
Lsi01g00520 343 Coils Coil 155 175 - -
Lsi01g00520 343 SUPERFAMILY Homeodomain-like 48 103 IPR009057 -
Lsi01g00520 343 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 49 104 IPR006447 GO:0003677
Lsi01g00520 343 MobiDBLite consensus disorder prediction 30 46 - -
Lsi01g00520 343 Pfam MYB-CC type transfactor, LHEQLE motif 152 198 IPR025756 -
Lsi01g00520 343 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 3 116 IPR044848 GO:0003700
Lsi01g00520 343 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 130 340 IPR044848 GO:0003700
Lsi01g00520 343 MobiDBLite consensus disorder prediction 254 284 - -
Lsi01g00520 343 Gene3D - 48 107 - -
Lsi01g00520 343 MobiDBLite consensus disorder prediction 213 296 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00520 - - - cmax:111478721 526.939
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00520 Lsi-Chr1:4247675 Lsi11g01586 Lsi-Chr11:24259033 1.18E-43 dispersed
Lsi03g01231 Lsi-Chr3:22888679 Lsi01g00520 Lsi-Chr1:4247675 9.66E-17 dispersed
Lsi01g00519 Lsi-Chr1:4238229 Lsi01g00520 Lsi-Chr1:4247675 8.51E-32 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi05g01838 . 7 266 G2-like Transcription Factor Family AT3G24120 58.1 8.2e-68 254.2
Lsi11g01586 . 16 173 G2-like Transcription Factor Family AT3G24120 63.0 4.1e-43 172.2
Lsi10g01509 . 22 167 G2-like Transcription Factor Family AT3G24120 56.6 3.4e-37 152.5
Lsi01g00519 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Lsi04g00286 . 19 257 G2-like Transcription Factor Family AT1G25550 54.9 6.3e-54 208.0
Lsi08g00393 . 20 258 G2-like Transcription Factor Family AT1G25550 54.1 3.8e-51 198.7
Lsi02g01341 . 1 269 G2-like Transcription Factor Family AT3G46640 52.2 1.5e-62 236.9
Lsi03g01637 . 1 286 G2-like Transcription Factor Family AT5G05090 55.6 7.9e-70 260.8
Lsi05g01838 . 7 314 G2-like Transcription Factor Family AT4G13640 53.6 6.1e-55 211.5
Lsi05g01838 . 7 266 G2-like Transcription Factor Family AT3G24120 58.1 8.2e-68 254.2
Lsi11g01586 . 16 173 G2-like Transcription Factor Family AT3G24120 63.0 4.1e-43 172.2
Lsi10g01509 . 22 167 G2-like Transcription Factor Family AT3G24120 56.6 3.4e-37 152.5
Lsi01g00519 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Lsi11g01586 . 1 387 G2-like Transcription Factor Family AT1G79430 52.6 2.1e-81 299.7
Lsi10g01509 . 1 166 G2-like Transcription Factor Family AT1G79430 71.0 3.1e-61 232.6
Lsi03g01290 . 70 292 G2-like Transcription Factor Family AT5G18240 53.3 6.4e-50 194.9
Lsi01g00520 . 84 343 G2-like Transcription Factor Family AT2G01060 56.8 2.5e-51 199.1
Lsi03g01637 . 1 286 G2-like Transcription Factor Family AT3G10760 56.9 5.6e-81 298.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008809 1 2 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24588 PF00249 Myb_DNA-binding 1.30E-07 CL0123 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00520 Lsi_Chr01 FPKM 1.312916 0.0 9.210302 6.999642 24.880022 25.536129 23.949759 1.401939 3.189516 2.695042