Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00525 ATGTTGCTGGTTTATTATTTGTGTTTGAGTTTGTTGTGGGGGAAGTCGTGGGGGGCTTCAGCCGGCGGTGATGGCACCACGAGGGAGCTCGATCAGACTCCGACGTGGGCTGTTGCTGGTGTTTGTGCTATTATCATCGTTATTTCTATCGCCTTGGAGAAACTCCTTCATAAAGCTGGAACGTGGCTTACGGAAAAGCACAAGAGAGCTCTTTTTGAAGCTCTGGAGAAAGTTAAAGCTGCAGTCAAAGGGGACAAATTGGAAAAGAACTTTGAAGGAGCCGATGAAGGCGAACATCATCGACGACTTCTATGGTATGAACGCAGGTTCCTGGCTGCTGCTGGTGGTGCTGTTAGTTGCAAGGAAGGTCATGTACCGCTTATATCTATCTCGGGATTGCATCAGTTGCACTTATTTATCTTCTTCTTAGCCGTATTTCATGTCGTATATAGTGCTATCACAATGATGCTTGGGAGGCTAAAGATTCGAGGTTGGAAGGCGTGGGAGGAGGAGACCTCAACTCACAATTATGAGTTCTCCAATGATAATGCACGATTCAGGCTTACTCATGAAACATCATTTGTGAAAGCCCACACAAGTTTTTGGACAAAACTTCCTGTCTTCTTTTATATTGGATGCTTCTTCCGACAATTTTTCCGGTCCGTTGGTAAGGCTGACTACTTGGCATTACGTAATGGATTCATCGCTGTTCATCTTGCTCCAGGAAGTAAATTTGACTTTCAAAAATATATTAAAAGGTCTCTAGAAGATGACTTCAAAATAATTGTGGGAGTGAGTCCCGTGCTTTGGGCATCGTTTGTCGTCTTCTTGCTCATAAATGTTTATGGATGGCAAGCATTGTTTTGGACATCCTTAGTCCCTGTGATTATAATCCTGGCTGTTGGAACAAAGCTTCAAGGAATTATGACAAAAATGGCTCTTGAGATTACAGAAAGACATGCTGTTGTTCAAGGAATTCCTCTTGTTCAGGCATCAGATAAATATTTTTGGTTTGGCAAGCCTCAGCTGGTTCTTTACCTCATCCACTTCGCTTTATTTTCGTATTCCTTTGGGCTAAAATCCTGCTTCCATACTGATTTCAAGCTTGCAATCGTAAAAGTTGGTCTCGGGGTTGGCGTTCTCTGTCTTTGCAGTTATATAACTCTTCCACTCTATGCTCTTGTGACTCAGTATAATTTTGCTGGTCTTGCGGGGCTGACTCGGTCGGTGGCTTTGCAGATGGGTACACGTATGAAGAAGTCGATCTTTGACGAACAAACATCAAAGGCCCTCAAGAAGTGGCACATGGCTGTTAAGAAGCGGCATGGAAAGTCCCCAACACGAAAGCTAGGGAGTCCAAATGCGTCGCCAATACATTCATCATCTGGCTACACATTGCATCGTTTCAAAACCACAGGTCACTCAAACAGATCATCCATGTACGATGAGAATGATGCATCTGATTATGAAGTTGATCCGTTGTCGCCTAAAGTCGATACTCCAAATTTTACGGTTAGAATAGATCGCACGGATGAACATCAAGCCGAAATAATTGAATCCCAGCATACAGAAAAAAGGAATGAAGACGATTTCTCATTTGCCAAGCCTGGACCAACGAAAGGACCATGA 1629 43.52 MLLVYYLCLSLLWGKSWGASAGGDGTTRELDQTPTWAVAGVCAIIIVISIALEKLLHKAGTWLTEKHKRALFEALEKVKAAVKGDKLEKNFEGADEGEHHRRLLWYERRFLAAAGGAVSCKEGHVPLISISGLHQLHLFIFFLAVFHVVYSAITMMLGRLKIRGWKAWEEETSTHNYEFSNDNARFRLTHETSFVKAHTSFWTKLPVFFYIGCFFRQFFRSVGKADYLALRNGFIAVHLAPGSKFDFQKYIKRSLEDDFKIIVGVSPVLWASFVVFLLINVYGWQALFWTSLVPVIIILAVGTKLQGIMTKMALEITERHAVVQGIPLVQASDKYFWFGKPQLVLYLIHFALFSYSFGLKSCFHTDFKLAIVKVGLGVGVLCLCSYITLPLYALVTQYNFAGLAGLTRSVALQMGTRMKKSIFDEQTSKALKKWHMAVKKRHGKSPTRKLGSPNASPIHSSSGYTLHRFKTTGHSNRSSMYDENDASDYEVDPLSPKVDTPNFTVRIDRTDEHQAEIIESQHTEKRNEDDFSFAKPGPTKGP 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4298311 4303598 - Lsi01G005250.1 Lsi01g00525 653183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00525 542 MobiDBLite consensus disorder prediction 438 542 - -
Lsi01g00525 542 PANTHER MLO-LIKE PROTEIN 1 20 81 IPR004326 GO:0006952|GO:0016021
Lsi01g00525 542 PANTHER MLO-LIKE PROTEIN 1 94 531 IPR004326 GO:0006952|GO:0016021
Lsi01g00525 542 MobiDBLite consensus disorder prediction 504 533 - -
Lsi01g00525 542 Pfam Mlo family 28 80 IPR004326 GO:0006952|GO:0016021
Lsi01g00525 542 Pfam Mlo family 98 456 IPR004326 GO:0006952|GO:0016021
Lsi01g00525 542 MobiDBLite consensus disorder prediction 449 482 - -
Lsi01g00525 542 PANTHER MLO-LIKE PROTEIN 20 81 - -
Lsi01g00525 542 PANTHER MLO-LIKE PROTEIN 94 531 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00525 K08472 MLO; mlo protein - csv:101212923 927.161
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00525 Lsi-Chr1:4298311 Lsi07g01039 Lsi-Chr7:15744283 3.60E-162 dispersed
Lsi01g00525 Lsi-Chr1:4298311 Lsi08g00776 Lsi-Chr8:16142106 2.18E-150 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g152 . . Bda02g00508 . . Bpe01g00450 . . . . Cma03g01297 Cma07g00379 . Car07g00331 . . Cpe10g00718 Bhi03g00355 Tan03g2523 . . . . . Cla01g02044 Cam01g2152 Cec04g1809 Cco04g1876 Clacu01g2168 Cmu01g2043 Cre04g1720 . Cone5ag1684 . . Lsi01g00525 Csa06g03661 . Cme08g00265 . Blo14g00412 . . . . . Bma11g00425 . Cmo03g00647 Cmo07g00374 . . . . Cpe19g00902 . . . . . . . . . . . . . . . . . Chy02g00500 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi04g01324 . 5 577 MLO family AT5G53760 62.1 4.0e-188 654.8
Lsi02g01541 . 3 606 MLO family AT5G53760 55.5 4.9e-178 621.3
Lsi02g01432 . 10 470 MLO family AT3G45290 54.0 2.4e-136 482.6
Lsi04g01324 . 1 558 MLO family AT1G26700 60.8 4.6e-181 631.3
Lsi02g01541 . 3 606 MLO family AT1G26700 54.8 3.0e-172 602.1
Lsi02g01429 . 8 510 MLO family AT2G39200 66.0 6.0e-192 667.5
Lsi04g00059 . 7 529 MLO family AT2G39200 65.0 4.3e-190 661.4
Lsi10g01281 . 8 483 MLO family AT2G39200 53.2 3.5e-147 518.8
Lsi02g01429 . 1 416 MLO family AT1G61560 66.1 7.7e-157 550.4
Lsi04g00059 . 7 413 MLO family AT1G61560 64.7 1.3e-151 533.1
Lsi10g01281 . 1 336 MLO family AT1G61560 59.2 5.8e-120 427.9
Lsi01g00525 . 10 461 MLO family AT2G17430 54.7 8.6e-140 494.2
Lsi02g01429 . 5 458 MLO family AT2G17430 51.1 1.9e-123 439.9
Lsi07g01039 . 28 451 MLO family AT2G17430 50.7 4.0e-113 405.6
Lsi01g00525 . 28 538 MLO family AT2G17480 56.0 1.5e-161 566.6
Lsi02g01429 . 8 463 MLO family AT2G17480 52.4 7.7e-126 448.0
Lsi08g00776 . 9 436 MLO family AT2G17480 50.8 2.3e-114 409.8
Lsi08g00776 . 12 369 MLO family AT1G42560 56.7 2.6e-114 409.1
Lsi01g00525 . 28 353 MLO family AT1G42560 52.6 1.1e-101 367.1
Lsi09g01887 . 6 413 MLO family AT4G24250 50.2 2.7e-98 355.9
Lsi01g00525 . 8 354 MLO family AT5G65970 60.9 1.5e-124 443.4
Lsi08g00776 . 8 367 MLO family AT5G65970 54.5 3.8e-107 385.6
Lsi02g01429 . 2 381 MLO family AT5G65970 51.1 9.7e-103 370.9
Lsi10g01281 . 2 337 MLO family AT5G65970 50.4 1.6e-89 327.0
Lsi07g01039 . 27 349 MLO family AT5G65970 50.5 1.3e-86 317.4
Lsi02g01429 . 6 488 MLO family AT2G33670 50.1 9.1e-128 454.1
Lsi01g00525 . 18 441 MLO family AT2G33670 53.4 2.0e-127 453.0
Lsi04g00059 . 64 530 MLO family AT1G11310 63.7 2.0e-167 585.9
Lsi02g01429 . 63 506 MLO family AT1G11310 64.4 1.0e-163 573.5
Lsi10g01281 . 63 454 MLO family AT1G11310 51.9 2.6e-122 436.0
Lsi09g01887 . 5 489 MLO family AT2G44110 54.9 6.4e-142 501.1
Lsi09g01887 . 1 496 MLO family AT4G02600 66.8 1.3e-185 646.4
Lsi09g01887 . 1 496 MLO family AT4G02600 66.8 1.3e-185 646.4
Lsi04g00059 . 64 530 MLO family AT1G11310 63.7 2.0e-167 585.9
Lsi02g01429 . 63 506 MLO family AT1G11310 64.4 1.0e-163 573.5
Lsi10g01281 . 63 454 MLO family AT1G11310 51.9 2.6e-122 436.0
Lsi02g01432 . 10 470 MLO family AT3G45290 54.0 2.4e-136 482.6
Lsi02g01429 . 6 488 MLO family AT2G33670 50.1 9.1e-128 454.1
Lsi01g00525 . 18 441 MLO family AT2G33670 53.4 2.0e-127 453.0
Lsi02g01429 . 1 416 MLO family AT1G61560 66.1 7.7e-157 550.4
Lsi04g00059 . 7 413 MLO family AT1G61560 64.7 1.3e-151 533.1
Lsi10g01281 . 1 336 MLO family AT1G61560 59.2 5.8e-120 427.9
Lsi01g00525 . 10 461 MLO family AT2G17430 54.7 8.6e-140 494.2
Lsi02g01429 . 5 458 MLO family AT2G17430 51.1 1.9e-123 439.9
Lsi07g01039 . 28 451 MLO family AT2G17430 50.7 4.0e-113 405.6
Lsi01g00525 . 28 538 MLO family AT2G17480 56.0 1.5e-161 566.6
Lsi02g01429 . 8 463 MLO family AT2G17480 52.4 7.7e-126 448.0
Lsi08g00776 . 9 436 MLO family AT2G17480 50.8 2.3e-114 409.8
Lsi08g00776 . 12 369 MLO family AT1G42560 56.7 2.6e-114 409.1
Lsi01g00525 . 28 353 MLO family AT1G42560 52.6 1.1e-101 367.1
Lsi01g00525 . 8 354 MLO family AT5G65970 60.9 1.5e-124 443.4
Lsi08g00776 . 8 367 MLO family AT5G65970 54.5 3.8e-107 385.6
Lsi02g01429 . 2 381 MLO family AT5G65970 51.1 9.7e-103 370.9
Lsi10g01281 . 2 337 MLO family AT5G65970 50.4 1.6e-89 327.0
Lsi07g01039 . 27 349 MLO family AT5G65970 50.5 1.3e-86 317.4
Lsi04g01324 . 5 577 MLO family AT5G53760 62.1 4.0e-188 654.8
Lsi02g01541 . 3 606 MLO family AT5G53760 55.5 4.9e-178 621.3
Lsi02g01429 . 8 510 MLO family AT2G39200 66.0 6.0e-192 667.5
Lsi04g00059 . 7 529 MLO family AT2G39200 65.0 4.3e-190 661.4
Lsi10g01281 . 8 483 MLO family AT2G39200 53.2 3.5e-147 518.8
Lsi09g01887 . 6 413 MLO family AT4G24250 50.2 2.7e-98 355.9
Lsi04g01324 . 1 558 MLO family AT1G26700 60.8 4.6e-181 631.3
Lsi02g01541 . 3 606 MLO family AT1G26700 54.8 3.0e-172 602.1
Lsi09g01887 . 5 489 MLO family AT2G44110 54.9 6.4e-142 501.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000765 3 4 3 4 2 3 4 3 3 3 2 3 4 3 3 4 2 3 4 3 3 3 3 3 3 3 2 6 2 2 93
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00525 Lsi_Chr01 FPKM 0.286032 0.0 0.153919 0.25911 0.0 0.0 0.0 0.0 0.0 0.0