Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00527 ATGAGGAGTATTTGTATTCTAGTATTGATGCTTCTCTTCAGTCGGAGTTCCTCAATTGGAGACAGTACAAATGTAACTACGAGACCTGAAGTTGTCAACATTGGGGCTTTATTCTCTTTCCGTTCTATGATCGGCAAAGTTGGTAAAATTGCTGTAGAAGCTGCTGTCGAGGATGTAAATTCTGATCCATCCATTCTGGGGGGGACAAAACTGAAGCTTAGTTTACATGATACCAATTACAGTGGATTTTTGGGCATCATTGAATCCTTGCGTTTCATGGAGACTAAGACTATGGCCATAATTGGTCCCCAAAACTCTGTAACTGCTCATGTTATATCTCATATCGCAAATGAGCTCCAAGTTCCTCTATTGTCATTTTCAGCAACAGATCCCACACTGTCATCACTTCAGTTTCCTTTCTTTATCAGAACTTCACAGAATGATCTGTATCAGATGGCTGCAGTAGCTGAAATAGTTGACTACTACCAATGGAGAGAGGTGATTGCCATCTTTGTCGATGATGACCATGGTAGAAATGGTATTGCTGCATTGGGGGATCAACTTAATGAGAAACGATGCAAGATCTCATTAAAAGTACCATTGAAGCCAGATGCAAGTCGAGATGAGGTCACTGATGCACTTGTTAAGGTGGCTTTAACCGAGTCTCGGATACTTGTTGTTCACACTTATGAGACCACAGGTATGGTTGTGCTCAATGTGGCTCAATATCTTGGATTGACAGGACCTGGGTACGTGTGGATAGCCACTAACTGGCTTTCTTTGCTACTCGACACAAATTCTCCTCTTCCTCCTGCTTCTATGGAAAATATTCAAGGACTCGTTGCTTTGCGTCTTTATACACCAGATTCTGCACTCAAAAGGAATTTTGTTTCAAGGTGGACCAATTTGACTAATGGAAAGTCATCAAATGGTCCGCTCGGATTGAGTACTTACGGATTATATGCTTATGATACTGTTTGGATGCTTGCACATGCAATAAATGCATTTCTTAATGAAGGTGGAAATCTTTCATTTTCGAAACTTTCGAAGTTAACTGGGACTGATGTTGGAACTTTGAATTTGAACTCTATGAGCATCTTCAATGATGGGAAGACACTACTTCACAAAATTTTAGAAGTCAATTTTACTGGAATAACAGGTTCAGTTGAGTTCACTCCAGACAGGGACTTAATTCACCCTGCATTCGAGGTGATCAATATAATTGGCACTGGGGAAAGAAGAATTGGTTATTGGTCTAAATATTCTGGCCTGTCAATTGTGCCTCCTGAAATCCTTTACTTGAAACCACCTAACCGAACCAGTTCAAATCAAAAGCTATATGATGTGGTATGGCCTGGACAAGCAACGCAGAAGCCTCGTGGGTGGGCATTTCCAAACCGTGGAAGACACTTGAGAATTGGAGTTCCGAGACGAGTCAGTTATCAAGAATTTGTCTCACATGTAGAAGGAACTGACATGTTTACTGGCTACTGCATTGATGTCTTCACTGCAGCAATCAACATGTTGCCTTATGCGGTCCCCTATAAGTTAATTCCTTTTGGGGATGGCATTACTAATCCTAGTGAAACCGAACTTATTCGTCTAATCACAACTGGGGTCTTTGATGGAGCGATAGGTGACATTGCAATTATCACAAACCGAACCAGGCTGGCAGATTTTACACAACCATACATCGAGTCTGGCCTAGTAGTTGTAGCCCCAGTCAAGAAGTTGAATTCTAGTGCTTGGGCCTTTTTACGGCCGTTCACTCCGAAGATGTGGTGTGTTACGGCTGCTTCTTTTCTTGTAGTAGGAGCTGTTGTTTGGATTTTGGAGCATAGGATAAATGATGATTTTCGTGGCCCTCCGAAGAAACAAGTTATTACTATTCTATGGTTCAGCTTTTCAACTCTATTCTTCTCTCATCGGGAAAACACAGTCAGTGCCCTCGGTCGCCTCGTGCTGCTCATATGGTTATTTGTTGTTCTAATTATCAACTCAAGCTATACTGCAAGCTTGACCTCTATCCTTACAGTTCAACAACTTTCTTCTCCTGTCAAAGGAATTGAAACTTTGGTTTCAAACAATGACCCAATTGGCTACCAGCAGGGTTCATTTGCTCGAAACTACTTGATTGAGGAACTTGGCATTCATGAGTCGAGACTCGTTCCACTCATCTCAGCAGAACACTATGTCAAAGCCTTGAACGATGGGCCAGCGAATAATGGTGTTGCTGCTATCGTCGACGAGCGAGCATATGTAGAGCTCTTCCTTTCAACCCGTTGTGAATACAGTATTGTTGGCCAAGAATTCACCAAAAATGGGTGGGGATTTGCTTTCCCGCGCGACTCTCCTTTAGCAGTTGACTTGTCCACAGCTATTCTAAAACTGTCTGAAGACGGAGATCTTCAGAGGATCCATGACAAATGGTTAATGAAAAGTGCTTGCACATCACAAGCCTCCAAATTTGAGGTGGATCGACTTCAGCTCAATAGCTTTTGGGGACTTTTTCTAATATGTGGATTAGCCTGTTTGCTCGCTCTATCGATATACCTCTTCCAAACGGTGCGCCAATATAGCGAGCATAACTCTGAAGAACTCGGGTCTTCTGAGCAAACCTCTCGATCTTCAAGCCTGCATAGATTCCTTTCTTTTGCAGATGAAAAAGAAGAAGTCTTCAGAAGTCGATCCAAGCGAAAACAGATGCAGGAGGCTTCATTTAGAAGCGTGAATGAGGAAATTTCAACAGGCAGTTCAAGAAAAATTGGCCATGGTTATGCTGATGGTATTGGTGACGCATGA 2802 42.33 MRSICILVLMLLFSRSSSIGDSTNVTTRPEVVNIGALFSFRSMIGKVGKIAVEAAVEDVNSDPSILGGTKLKLSLHDTNYSGFLGIIESLRFMETKTMAIIGPQNSVTAHVISHIANELQVPLLSFSATDPTLSSLQFPFFIRTSQNDLYQMAAVAEIVDYYQWREVIAIFVDDDHGRNGIAALGDQLNEKRCKISLKVPLKPDASRDEVTDALVKVALTESRILVVHTYETTGMVVLNVAQYLGLTGPGYVWIATNWLSLLLDTNSPLPPASMENIQGLVALRLYTPDSALKRNFVSRWTNLTNGKSSNGPLGLSTYGLYAYDTVWMLAHAINAFLNEGGNLSFSKLSKLTGTDVGTLNLNSMSIFNDGKTLLHKILEVNFTGITGSVEFTPDRDLIHPAFEVINIIGTGERRIGYWSKYSGLSIVPPEILYLKPPNRTSSNQKLYDVVWPGQATQKPRGWAFPNRGRHLRIGVPRRVSYQEFVSHVEGTDMFTGYCIDVFTAAINMLPYAVPYKLIPFGDGITNPSETELIRLITTGVFDGAIGDIAIITNRTRLADFTQPYIESGLVVVAPVKKLNSSAWAFLRPFTPKMWCVTAASFLVVGAVVWILEHRINDDFRGPPKKQVITILWFSFSTLFFSHRENTVSALGRLVLLIWLFVVLIINSSYTASLTSILTVQQLSSPVKGIETLVSNNDPIGYQQGSFARNYLIEELGIHESRLVPLISAEHYVKALNDGPANNGVAAIVDERAYVELFLSTRCEYSIVGQEFTKNGWGFAFPRDSPLAVDLSTAILKLSEDGDLQRIHDKWLMKSACTSQASKFEVDRLQLNSFWGLFLICGLACLLALSIYLFQTVRQYSEHNSEELGSSEQTSRSSSLHRFLSFADEKEEVFRSRSKRKQMQEASFRSVNEEISTGSSRKIGHGYADGIGDA 933
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 4324354 4329501 - Lsi01G005270.1 Lsi01g00527 653185
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00527 933 CDD GluR_Plant 471 811 - -
Lsi01g00527 933 Gene3D - 50 399 - -
Lsi01g00527 933 SUPERFAMILY Periplasmic binding protein-like II 449 814 - -
Lsi01g00527 933 Pfam Bacterial extracellular solute-binding proteins, family 3 491 811 IPR001638 -
Lsi01g00527 933 PIRSF IGluLR_plant 1 925 IPR017103 -
Lsi01g00527 933 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 15 921 - -
Lsi01g00527 933 SMART GluR_14 472 813 IPR001320 GO:0015276|GO:0016020
Lsi01g00527 933 Pfam Receptor family ligand binding region 50 408 IPR001828 -
Lsi01g00527 933 Gene3D - 147 424 - -
Lsi01g00527 933 Gene3D - 463 581 - -
Lsi01g00527 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Lsi01g00527 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Lsi01g00527 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 322 334 - -
Lsi01g00527 933 Gene3D - 731 780 - -
Lsi01g00527 933 Gene3D - 781 811 - -
Lsi01g00527 933 CDD PBP1_GABAb_receptor_plant 33 428 IPR044440 -
Lsi01g00527 933 Gene3D - 582 708 - -
Lsi01g00527 933 Pfam Ligand-gated ion channel 812 844 IPR001320 GO:0015276|GO:0016020
Lsi01g00527 933 SUPERFAMILY Periplasmic binding protein-like I 28 463 IPR028082 -
Lsi01g00527 933 MobiDBLite consensus disorder prediction 894 933 - -
Lsi01g00527 933 PANTHER GLUTAMATE RECEPTOR 3.6 15 921 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00527 Lsi-Chr1:4324354 Lsi04g01826 Lsi-Chr4:25427138 0 dispersed
Lsi07g00559 Lsi-Chr7:5904826 Lsi01g00527 Lsi-Chr1:4324354 5.20E-147 transposed
Lsi08g00819 Lsi-Chr8:16538725 Lsi01g00527 Lsi-Chr1:4324354 1.30E-150 transposed
Lsi01g00527 Lsi-Chr1:4324354 Lsi04g01823 Lsi-Chr4:25408210 4.22E-54 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00527 K05387 - csv:101213408 1700.64