Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi01g00527 | ATGAGGAGTATTTGTATTCTAGTATTGATGCTTCTCTTCAGTCGGAGTTCCTCAATTGGAGACAGTACAAATGTAACTACGAGACCTGAAGTTGTCAACATTGGGGCTTTATTCTCTTTCCGTTCTATGATCGGCAAAGTTGGTAAAATTGCTGTAGAAGCTGCTGTCGAGGATGTAAATTCTGATCCATCCATTCTGGGGGGGACAAAACTGAAGCTTAGTTTACATGATACCAATTACAGTGGATTTTTGGGCATCATTGAATCCTTGCGTTTCATGGAGACTAAGACTATGGCCATAATTGGTCCCCAAAACTCTGTAACTGCTCATGTTATATCTCATATCGCAAATGAGCTCCAAGTTCCTCTATTGTCATTTTCAGCAACAGATCCCACACTGTCATCACTTCAGTTTCCTTTCTTTATCAGAACTTCACAGAATGATCTGTATCAGATGGCTGCAGTAGCTGAAATAGTTGACTACTACCAATGGAGAGAGGTGATTGCCATCTTTGTCGATGATGACCATGGTAGAAATGGTATTGCTGCATTGGGGGATCAACTTAATGAGAAACGATGCAAGATCTCATTAAAAGTACCATTGAAGCCAGATGCAAGTCGAGATGAGGTCACTGATGCACTTGTTAAGGTGGCTTTAACCGAGTCTCGGATACTTGTTGTTCACACTTATGAGACCACAGGTATGGTTGTGCTCAATGTGGCTCAATATCTTGGATTGACAGGACCTGGGTACGTGTGGATAGCCACTAACTGGCTTTCTTTGCTACTCGACACAAATTCTCCTCTTCCTCCTGCTTCTATGGAAAATATTCAAGGACTCGTTGCTTTGCGTCTTTATACACCAGATTCTGCACTCAAAAGGAATTTTGTTTCAAGGTGGACCAATTTGACTAATGGAAAGTCATCAAATGGTCCGCTCGGATTGAGTACTTACGGATTATATGCTTATGATACTGTTTGGATGCTTGCACATGCAATAAATGCATTTCTTAATGAAGGTGGAAATCTTTCATTTTCGAAACTTTCGAAGTTAACTGGGACTGATGTTGGAACTTTGAATTTGAACTCTATGAGCATCTTCAATGATGGGAAGACACTACTTCACAAAATTTTAGAAGTCAATTTTACTGGAATAACAGGTTCAGTTGAGTTCACTCCAGACAGGGACTTAATTCACCCTGCATTCGAGGTGATCAATATAATTGGCACTGGGGAAAGAAGAATTGGTTATTGGTCTAAATATTCTGGCCTGTCAATTGTGCCTCCTGAAATCCTTTACTTGAAACCACCTAACCGAACCAGTTCAAATCAAAAGCTATATGATGTGGTATGGCCTGGACAAGCAACGCAGAAGCCTCGTGGGTGGGCATTTCCAAACCGTGGAAGACACTTGAGAATTGGAGTTCCGAGACGAGTCAGTTATCAAGAATTTGTCTCACATGTAGAAGGAACTGACATGTTTACTGGCTACTGCATTGATGTCTTCACTGCAGCAATCAACATGTTGCCTTATGCGGTCCCCTATAAGTTAATTCCTTTTGGGGATGGCATTACTAATCCTAGTGAAACCGAACTTATTCGTCTAATCACAACTGGGGTCTTTGATGGAGCGATAGGTGACATTGCAATTATCACAAACCGAACCAGGCTGGCAGATTTTACACAACCATACATCGAGTCTGGCCTAGTAGTTGTAGCCCCAGTCAAGAAGTTGAATTCTAGTGCTTGGGCCTTTTTACGGCCGTTCACTCCGAAGATGTGGTGTGTTACGGCTGCTTCTTTTCTTGTAGTAGGAGCTGTTGTTTGGATTTTGGAGCATAGGATAAATGATGATTTTCGTGGCCCTCCGAAGAAACAAGTTATTACTATTCTATGGTTCAGCTTTTCAACTCTATTCTTCTCTCATCGGGAAAACACAGTCAGTGCCCTCGGTCGCCTCGTGCTGCTCATATGGTTATTTGTTGTTCTAATTATCAACTCAAGCTATACTGCAAGCTTGACCTCTATCCTTACAGTTCAACAACTTTCTTCTCCTGTCAAAGGAATTGAAACTTTGGTTTCAAACAATGACCCAATTGGCTACCAGCAGGGTTCATTTGCTCGAAACTACTTGATTGAGGAACTTGGCATTCATGAGTCGAGACTCGTTCCACTCATCTCAGCAGAACACTATGTCAAAGCCTTGAACGATGGGCCAGCGAATAATGGTGTTGCTGCTATCGTCGACGAGCGAGCATATGTAGAGCTCTTCCTTTCAACCCGTTGTGAATACAGTATTGTTGGCCAAGAATTCACCAAAAATGGGTGGGGATTTGCTTTCCCGCGCGACTCTCCTTTAGCAGTTGACTTGTCCACAGCTATTCTAAAACTGTCTGAAGACGGAGATCTTCAGAGGATCCATGACAAATGGTTAATGAAAAGTGCTTGCACATCACAAGCCTCCAAATTTGAGGTGGATCGACTTCAGCTCAATAGCTTTTGGGGACTTTTTCTAATATGTGGATTAGCCTGTTTGCTCGCTCTATCGATATACCTCTTCCAAACGGTGCGCCAATATAGCGAGCATAACTCTGAAGAACTCGGGTCTTCTGAGCAAACCTCTCGATCTTCAAGCCTGCATAGATTCCTTTCTTTTGCAGATGAAAAAGAAGAAGTCTTCAGAAGTCGATCCAAGCGAAAACAGATGCAGGAGGCTTCATTTAGAAGCGTGAATGAGGAAATTTCAACAGGCAGTTCAAGAAAAATTGGCCATGGTTATGCTGATGGTATTGGTGACGCATGA | 2802 | 42.33 | MRSICILVLMLLFSRSSSIGDSTNVTTRPEVVNIGALFSFRSMIGKVGKIAVEAAVEDVNSDPSILGGTKLKLSLHDTNYSGFLGIIESLRFMETKTMAIIGPQNSVTAHVISHIANELQVPLLSFSATDPTLSSLQFPFFIRTSQNDLYQMAAVAEIVDYYQWREVIAIFVDDDHGRNGIAALGDQLNEKRCKISLKVPLKPDASRDEVTDALVKVALTESRILVVHTYETTGMVVLNVAQYLGLTGPGYVWIATNWLSLLLDTNSPLPPASMENIQGLVALRLYTPDSALKRNFVSRWTNLTNGKSSNGPLGLSTYGLYAYDTVWMLAHAINAFLNEGGNLSFSKLSKLTGTDVGTLNLNSMSIFNDGKTLLHKILEVNFTGITGSVEFTPDRDLIHPAFEVINIIGTGERRIGYWSKYSGLSIVPPEILYLKPPNRTSSNQKLYDVVWPGQATQKPRGWAFPNRGRHLRIGVPRRVSYQEFVSHVEGTDMFTGYCIDVFTAAINMLPYAVPYKLIPFGDGITNPSETELIRLITTGVFDGAIGDIAIITNRTRLADFTQPYIESGLVVVAPVKKLNSSAWAFLRPFTPKMWCVTAASFLVVGAVVWILEHRINDDFRGPPKKQVITILWFSFSTLFFSHRENTVSALGRLVLLIWLFVVLIINSSYTASLTSILTVQQLSSPVKGIETLVSNNDPIGYQQGSFARNYLIEELGIHESRLVPLISAEHYVKALNDGPANNGVAAIVDERAYVELFLSTRCEYSIVGQEFTKNGWGFAFPRDSPLAVDLSTAILKLSEDGDLQRIHDKWLMKSACTSQASKFEVDRLQLNSFWGLFLICGLACLLALSIYLFQTVRQYSEHNSEELGSSEQTSRSSSLHRFLSFADEKEEVFRSRSKRKQMQEASFRSVNEEISTGSSRKIGHGYADGIGDA | 933 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4324354 | 4329501 | - | Lsi01G005270.1 | Lsi01g00527 | 653185 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi01g00527 | 933 | CDD | GluR_Plant | 471 | 811 | - | - | |
Lsi01g00527 | 933 | Gene3D | - | 50 | 399 | - | - | |
Lsi01g00527 | 933 | SUPERFAMILY | Periplasmic binding protein-like II | 449 | 814 | - | - | |
Lsi01g00527 | 933 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 491 | 811 | IPR001638 | - | |
Lsi01g00527 | 933 | PIRSF | IGluLR_plant | 1 | 925 | IPR017103 | - | |
Lsi01g00527 | 933 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 15 | 921 | - | - | |
Lsi01g00527 | 933 | SMART | GluR_14 | 472 | 813 | IPR001320 | GO:0015276|GO:0016020 | |
Lsi01g00527 | 933 | Pfam | Receptor family ligand binding region | 50 | 408 | IPR001828 | - | |
Lsi01g00527 | 933 | Gene3D | - | 147 | 424 | - | - | |
Lsi01g00527 | 933 | Gene3D | - | 463 | 581 | - | - | |
Lsi01g00527 | 933 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 45 | 61 | - | - | |
Lsi01g00527 | 933 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 105 | 133 | - | - | |
Lsi01g00527 | 933 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 322 | 334 | - | - | |
Lsi01g00527 | 933 | Gene3D | - | 731 | 780 | - | - | |
Lsi01g00527 | 933 | Gene3D | - | 781 | 811 | - | - | |
Lsi01g00527 | 933 | CDD | PBP1_GABAb_receptor_plant | 33 | 428 | IPR044440 | - | |
Lsi01g00527 | 933 | Gene3D | - | 582 | 708 | - | - | |
Lsi01g00527 | 933 | Pfam | Ligand-gated ion channel | 812 | 844 | IPR001320 | GO:0015276|GO:0016020 | |
Lsi01g00527 | 933 | SUPERFAMILY | Periplasmic binding protein-like I | 28 | 463 | IPR028082 | - | |
Lsi01g00527 | 933 | MobiDBLite | consensus disorder prediction | 894 | 933 | - | - | |
Lsi01g00527 | 933 | PANTHER | GLUTAMATE RECEPTOR 3.6 | 15 | 921 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00527 | Lsi-Chr1:4324354 | Lsi04g01826 | Lsi-Chr4:25427138 | 0 | dispersed | |
Lsi07g00559 | Lsi-Chr7:5904826 | Lsi01g00527 | Lsi-Chr1:4324354 | 5.20E-147 | transposed | |
Lsi08g00819 | Lsi-Chr8:16538725 | Lsi01g00527 | Lsi-Chr1:4324354 | 1.30E-150 | transposed | |
Lsi01g00527 | Lsi-Chr1:4324354 | Lsi04g01823 | Lsi-Chr4:25408210 | 4.22E-54 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi01g00527 | K05387 | - | csv:101213408 | 1700.64 |