Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00535 ATGGCGTTTTCCGATGAGAACAATCCCAACTTGATCAAACCCACTTCCTTTCTTCCAGGAGGAGGGTTGGAGAAGAGTGGGAGAGCATTTGGGCAGGAGATTAGTAGAACTAATAATAATCGGAGAGCTCTTAATGCCATTAATCAGAATTCTGTGGTGAATCAAGCTTACCCTTGTGTTGTTAACAAGAGAGGACTCTCAGGAAAACAAGAGATTTGCGAGAAGAAGCAGGTTGATCCATTTCATAGACCCATTACAAGGAAGTTTGCTGCTCAAATTGCTAGTAGTCAACAACTTCATCATCCTCAGGAAAATAATAAGCCTAACTCATTTCTTACAAACTCAAATGCATTTGGACATTCCATATTTGTAGACGAGGATTGCAAAACAGTAGAAAATGATCATCCAGTTCCTATGTTCTTGGAGAAATCAGAACCATTATTGCCTCAGGAAGCAAGCCAGATGGAGGAGGTTGAAATGGAGGATATAGCAGAAGACGAAGACCCAGTAATCGACATCGACAGTGTCGATTCTGAGAACCCGCTTGCCGTTGTCGAGTATGTGGACGATCTCTACGCACACTACAGAAAAATTGAGAATTCAAGCTGTGTTCCCCCAAATTACATGACCAAACAAATTGACATTAATGAGAAGATGAGAGCTATACTAATTGACTGGCTTATAGAGGTGCATGACAAGTTTGATCTCATGGGAGAAACTTTGTTTCTCACTGTAAATCTCATAGACAGATTTTTGGCACAAAAAACAGTAGTGAGAAAGAAGCTTCAGCTTGTTGGTTTGGTTTCTATGCTCTTAGCTTGCAAATATGAGGAAGTTTCTGTCCCTGTTGTGGGAGATTTGATTCTTATTTCTGATAAAGCTTACTCTAGAAAAGAAGTTCTTGAAATGGAGACAGTGATGCTCAACTGTTTGCAGTTTAACATGTCAGTTCCCACACCCTTTGTTTTCCTTCAAAGGTTCCTTAAAGCTGCTCAATCTGACAAAAAGGATTCTGTTAATGAACAGCTTGAGCTAATGGCATTCTTCTTGATCGAACTCTCGCTCGTCGAGTATGAAATGCTGAGGTTCCCACCCTCTCTCCTAGCGGCAGCAGCGATTTACACAGCTCAATGTACTCTCACCGGAGTCGATGACTGTTGGAGCCGGACCTGCGAGTGGCATTCCAGCTACTCAGAAGATCAGCTCCTAGAATGCTCGAGACTAATGGTGGGGTTCCATCAAAAGGCAGCGACGGGGAAGCTCACCGGAGTTCATAGGAAGTACTGTACATCAAAATTTAACTACACGGCAAAATGTGAACCTGCACATTTTCTTTTGCAGACTCAGCAATAG 1353 42.28 MAFSDENNPNLIKPTSFLPGGGLEKSGRAFGQEISRTNNNRRALNAINQNSVVNQAYPCVVNKRGLSGKQEICEKKQVDPFHRPITRKFAAQIASSQQLHHPQENNKPNSFLTNSNAFGHSIFVDEDCKTVENDHPVPMFLEKSEPLLPQEASQMEEVEMEDIAEDEDPVIDIDSVDSENPLAVVEYVDDLYAHYRKIENSSCVPPNYMTKQIDINEKMRAILIDWLIEVHDKFDLMGETLFLTVNLIDRFLAQKTVVRKKLQLVGLVSMLLACKYEEVSVPVVGDLILISDKAYSRKEVLEMETVMLNCLQFNMSVPTPFVFLQRFLKAAQSDKKDSVNEQLELMAFFLIELSLVEYEMLRFPPSLLAAAAIYTAQCTLTGVDDCWSRTCEWHSSYSEDQLLECSRLMVGFHQKAATGKLTGVHRKYCTSKFNYTAKCEPAHFLLQTQQ 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4369805 4372244 + Lsi01G005350.1 Lsi01g00535 653193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00535 450 Gene3D - 190 437 - -
Lsi01g00535 450 PANTHER CYCLIN-B2-1 29 445 - -
Lsi01g00535 450 CDD CYCLIN 316 410 IPR013763 -
Lsi01g00535 450 SUPERFAMILY Cyclin-like 179 315 IPR036915 -
Lsi01g00535 450 CDD CYCLIN 219 308 IPR013763 -
Lsi01g00535 450 Pfam Cyclin, C-terminal domain 318 440 IPR004367 -
Lsi01g00535 450 SMART cyclin_7 322 411 IPR013763 -
Lsi01g00535 450 SMART cyclin_7 225 309 IPR013763 -
Lsi01g00535 450 ProSitePatterns Cyclins signature. 220 251 IPR006671 -
Lsi01g00535 450 Gene3D - 204 316 - -
Lsi01g00535 450 PANTHER CYCLINS 29 445 IPR039361 -
Lsi01g00535 450 SUPERFAMILY Cyclin-like 317 442 IPR036915 -
Lsi01g00535 450 PIRSF Cyclin_A_B_D_E 22 450 IPR039361 -
Lsi01g00535 450 Pfam Cyclin, N-terminal domain 191 316 IPR006671 -
Lsi01g00535 450 SMART Cyclin_C_2 318 442 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00535 Lsi-Chr1:4369805 Lsi11g01591 Lsi-Chr11:24296969 6.72E-64 dispersed
Lsi10g01118 Lsi-Chr10:15432307 Lsi01g00535 Lsi-Chr1:4369805 1.07E-75 transposed
Lsi01g00535 Lsi-Chr1:4369805 Lsi04g01804 Lsi-Chr4:25250289 2.24E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00535 K21777 - csv:101216622 836.639