Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00538 ATGGCTCGAAGATCCTTACCGATCCTCAAGCAGCTCCTCTCTAAATCCCCCTCTTCCGAGAATCCTGCCCTTTTGTCGTCATGTTTCAAATCCACAGTCGACGCTCAAAATCGATCCGTCACTTACATGCCCCGACCCGGAGACGGCGCCCCCCGAGCCGTTACCTTGATTCCCGGAGACGGAATTGGCCCCTTGGTTACTGGCGCCGTGGAGCAAGTCATGGATGCGATGCACGCCCCTTTGTATTTCGAGAAGTTTGAGATTCATGGCGATATGAAGAAGGTGCCCCAAGAAGTAATTGACTCGATTAAGAAAAATAAAGTGTGTTTGAAGGGAGGATTGGTGACTCCTGTTGGCGGTGGTGTGAGTTCGTTGAATGTGCAACTGAGGAAAGAGCTTGATCTTTATGCGTCGCTTGTGAATTGTTTTAATCTTCCTGGGCTTCCTACCAGGCATGAGAATGTCGATATTGTTGTGATTAGGGAGAATACAGAGGGTGAGTACTCTGGTTTGGAGCACGAGGTCGTTCCTGGTGTCGTCGAAAGCCTTAAGGTGATAACAAAGTTCTGTTCTGAGCGCATTGCTAAATATGCTTTCGAGTATGCTTACCTGAACAACAGAAAGAAAGTTACAGCTGTGCACAAAGCAAATATCATGAAGCTTGCAGATGGTCTATTTCTAGAATCTTGTCGAGAGGTTGCCACAAAGTATCCTGGAATAAAGTACAACGAAGTTATTGTCGACAACTGCTGCATGCAACTTGTCTCAAAGCCTGAGCAATTTGATGTTATGGTGACACCCAATCTTTATGGAAATCTTGTAGCGAACACAGCTGCTGGTATTGCAGGTGGAACAGGGGTTATGCCTGGAGGCAATGTTGGTGCTGATCACGCTGTTTTTGAGCAAGGAGCTTCAGCAGGAAATGTGGGGAATGAGAGGATAGTGGAACAAAAGAAGGCAAACCCTGTGGCGCTGCTCTTATCATCCGCCATGATGCTGAGACATCTCCAGTTTCCTTCTTTTGCCGATCGATTAGAAACGGCGGTCAAGAAGGTGATATTTGAAGGCAAGCACCGAACCAAGGACCTCGGTGGACAGAGCACGACGCAGGAGGTTGTTGATGCAGTTATAGCTGCTTTAGATTGA 1146 47.47 MARRSLPILKQLLSKSPSSENPALLSSCFKSTVDAQNRSVTYMPRPGDGAPRAVTLIPGDGIGPLVTGAVEQVMDAMHAPLYFEKFEIHGDMKKVPQEVIDSIKKNKVCLKGGLVTPVGGGVSSLNVQLRKELDLYASLVNCFNLPGLPTRHENVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEVIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNERIVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKKVIFEGKHRTKDLGGQSTTQEVVDAVIAALD 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4382511 4387721 + Lsi01G005380.1 Lsi01g00538 653196

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00538 381 TIGRFAM mito_nad_idh: isocitrate dehydrogenase, NAD-dependent 50 379 IPR004434 GO:0006099
Lsi01g00538 381 SMART Iso_dh_2 53 376 IPR024084 -
Lsi01g00538 381 Gene3D Isopropylmalate Dehydrogenase 39 380 - -
Lsi01g00538 381 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 53 380 - -
Lsi01g00538 381 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 22 379 - -
Lsi01g00538 381 Pfam Isocitrate/isopropylmalate dehydrogenase 54 376 IPR024084 -
Lsi01g00538 381 PANTHER NAD-DEPENDENT ISOCITRATE DEHYDROGENASE C,1 22 379 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00538 K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] - csv:101214612 728.783
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00538 Lsi-Chr1:4382511 Lsi10g00839 Lsi-Chr10:11962560 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1178 . . . . . . . . . . Cma03g00628 Cma07g00389 Car03g00583 Car07g00342 . Cpe19g00893 Cpe10g00358 . . . . . . . Cla01g02031 Cam01g2137 Cec04g1794 Cco04g1860 Clacu01g2153 Cmu01g2029 Cre04g1704 . . . . Lsi01g00538 . . Cme08g00988 Blo05g00680 . . . . Bpe06g00156 . . . Cmo03g00656 Cmo07g00383 . Cma20g00719 . . . . . . . . . . . . . . . . . . . Csa06g03392 Chy02g00513 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001945 2 2 2 1 1 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 2 3 2 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00538 Lsi_Chr01 FPKM 2.688349 3.351066 5.302942 4.803354 7.855299 7.412827 8.300991 4.563424 4.144946 4.632471